Carg26168 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26168
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Carg_Chr04: 11332147 .. 11336925 (-)
RNA-Seq Expression	Carg26168
Synteny	Carg26168

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGGCCGCTCTTCACAGACGTTTTCAGGATTCCGGGTGGTAATAGAAATCACCTCATCTTATTAACTATCATGTTCAATAAAGATAATATGTGCTTAACTATTAGATATATACTTAATTTTGTGCCTTCAAAATAAAAATTCAAGGATCTATTTACTATATATATATTATTTGAAGGAATACTTTATAAGAATCTGTGGAAATATTCAGATAACTATGTTTGGCAAGATTTGTGTATGAGAATCTAATCTTCAGGTAACTTACATATTAGTTCAAAATAATTTAAATTTATTTTTATTAATTTCATGTTACAATTTTATACAATTTATTTTTATTAACATTCTCCTTGTGCCACGAGGGACAAGGAGAATAAGGAGAATGTTAGAGCCACTATGGGAAATCTAAATTTCGAAACCTAGTTCGAATCTCGAACATAGGTTTTTACAGGTTCATATTGTTTACCGACTATGAGACTTGTATTATGTATGGTGTGAAAAAAGAAGTGAATAGCCCTTTGGAATCCACTCTTAAATTCGTCTTAGGACGAGGGACCACACAAGTACATAAGCTAGGGCTAGGCAATAGACCGACCAAGTTTTTAGAACTTAAAATCCAATACTTAGGACTTTGGGGCTAGGTCCACTGCCTTATGGTCAGGTTTAGAGTGGTGCCTTAGCATCAACCATGAACACGTTCAAGAGTTTAGAATTAAGCTATTTACTGAGTATTTTATACTCATTTTAGTTTTTACTATTTTCAGGTAATGACAAATTGTTGGTCGAGGACACGAGTGGTCTCAAGCAAGTAACCATGGTAGATAGCTTAGGTTTGAGAGCCTCCATCGGTTTGTATACGGTGAGTTTGTATATATGTAAGGTTTTATGTTTTAAAAGATTTCATGTCTCATCGTTTTAAAAAGCTAAAGAATATTGTATTTTTGTTCTTCTCAAGTTAGCCTACACCGTGATTCATGCTCTAAACAACTCGAAAAACGGGTCTTGGTAGTGACCTTATGGACTTACAAATTATAAACTCCAATAATACAAAATTAATTAATTATACTCTTTAATTAATTATATTTCATTCATTATTTATATATCACTGCACTATAGACCAAGAGTTGCACTCACATGTCCGGTAGGACAAGTTGTACCACTAGTACAATCATTACCAACAAGTTGATCTTTCACGAGCTCTTTGTAATTACAACTAGAAAAAAAAAAAAAAAAACTTACCTCTATAATTACATCTTAAAAATTACGTATCAGCGATCCTCTAATAAACAATTTATTTATAATACAACCATAACTAAGTCTCTCGAGAAAGTGAGAGAGCAAAGTATGCTTGCTCAAGTCTCAAAATCAGTACTTAAAGAAATTATTCTTCCACGTACCATATATAGGAATAAGTATCTTGTAAGATTATGTTCTCAGTACCGGATTTGATCAAGTTTCTAAAATGGTATGCATATTACATCGGTTACAAAAATCATTCTCACCCATGCAAACCAAAGGACATGTCCTTACAAGTCCTTACAAGTAAGAGTTTATAACTCACTGAGTATTAAAATTGAGTTGCATGTAATCATCCTATGATGTTAATCCTTAACAGATTTATAAACAGAGATAAAATATTTTGTGGATCAAATTATTTATAACAATTACAAAATGATTTGTTTGAATAATGTTACTAAGATAACACATCCAATCTCATCTATATACCATGAACTCTTTAAGTTATTACTTAAACATCATTCTTTCATATGGCAACCACTTACCGTTCAAGATTATACTAATAAACTTAAATTTTTTTATGCAATGAATAATGTTAAAATTTAAACTAAAATAATCTTAATTATTATTAAAAATTAAAGAATCAATTACAATCTTCCACTTACACTAAACTCGATGAAACGTGTATCATAAAGTATACTCTATACTCAAATGTTCTTCCCGTTGCCCTAGAGAAGTTGAGACATCTCCATTAAGAAAAAGCTTACGCGTAACCGTTAGTTTACAAAGCTTAGGAACATTGAAATAAGTTCATACTTTTAGTGAACTTACTGCCGAAGCCGAGTAGGATATATGAAATTTTTTTGTTATATAAATATACCTTTTATGATAATTATATGATTTATACGAGGTATGTATTTCTATTTATGCTTGAATATGACAAACATGATGTTATGACTATATTTATGCCTTGCGAGACATGAATTTGTATGTTCTATCTCGTAGGAAATTTGAGACATGTTATTTATGGAAGTATTATGTGAATCATTTGATTGAACCATGATTTTAAATGTGGGACCTTATACATGTTGTATTCTCGTAAGATCATAGATTACTTCTTTAATTTGTGATGTATGGACACTAATTCTCACTATATTATTCGATATCGTGAGCGTGTACTAGCCCATACCCAAGCCTAAGTGGTACATTAATGAGTCTAGCTAGTAGACTTATGTGCACGTGTATATGCCATGAGCGGAGAAATATTGTGTATTAGAAGTGTACATGGTCCAGGTTGAGTTGGGTTGGAGGATTTTTTTTTTTACCAACATTATGTAATACTGTCAGGTTGCAAAAAGTCATCAATTGCCTTATTCCCGCAATGAACATAGGTCGTCTCATGTGTTAGATCTTATTCATTGTGATCTTTGGGGTCCTTCTCCCGTCAAATCAAATTCGGGTTTTCTTTATTATGTTATTTTTATTGATGAAAAGGTATCTCAAAGCGATGGAGGTACCGAATTTACTAGTACTTGTTTCAAAACACATTTACGTAATTCTGGCATCTACCATCAACTCTCTTGTCCATATACACCTGCTCAAAATGGTCGTGCTGAGAGAAAATATCGTCATGTGAATGAGATTGGCTTGGCTCTTCTCTTTCACTCTCATCTTTCTCCTCGTTTTTGGGTTGATGCCTTCAGCACTACAGCTTATATTATCAATCGGTTGCCTACTCCACTTCTTGGAGCTTTCTCCCCGCAGCATCCCTTGTATTTTTTGGGGGTTATAGTCCTACTCATAAAGGGTTCCGCTGTCTTGATCCTGCCACCATTACACTATATATCACCCGTCATGCTCAATTTGATGAAACTCACTTTCTTGCTATCCCTAGCTCCCAGACCCAACCTCTTTCCTCTATTTCTATTTCAAATTTCTTAGAACCACATCCTTATCATATTGATTCATCCCCCTACCACTTCATCATTGCATATTCCTCGATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTGGATGAGTTTGTGGAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTACTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACAAGAGCCAAAACTGGTATATTCAAGCCTCGTCATCCAGCAAATCTTGGTATGTTTGGCTCATCTGGACTTCTTTTTGCTCTTCTTGCATCACAACTGAGCCAAAAGTATTCAAATCTGCAACTAAGAATCCTGCTTGGGTTGCTGCCATGGATGAAGAAATTTGAGCGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCCGTCGAGCGTTTCAAGCCTCGTCTTGTTGCCAAAGGTTATACTCGGGTTCCTGGTCTTGACTACATTGACACTTTCAGACCAGTTGTCAAAACTACCACTGTCTGTGTTGTGGTTTTTATTAAAGTCACAAATAAATGGCCTCTTCGACAACTTTGATGTCAATAATGTTTTTCTCAATGAACTCTTATTGAACGTGTTCATATAGAACAACCTCCTGGGTATATTGATCCTCGATTTCCTACTCATGTTTGTCTATTAAAGAAAGCCCTTTATGGCTTACAGCAAGCTCTCACGCCTGGTTTCAGCGTTTTAACTCATTTTTTCTCACACTTGGGTTTTCTTGCAATCGCGCTGACACGTCCCTTTTTGTCTTTCATCAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTGATAGCTTTACTCTCAAACTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTTGATAGCAAACCAGTCCACACTCCCATGGTTGTTTCTCAACACCTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTATAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATTACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGAATGCCCCTACTGTAGATCACTTTCTTGCTGTCAAACGTATTTTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCATCCATCCACTGTTCCTAGTATGCTAGTCGCTTATTTGGATACTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCGTTTCTTGGAGTGCCAAAAAGCAACCTACGGTCTCACGCTCCAGCTGTGAATCTGAATATCGTGCTCTTGCCACAACTACTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCATAG

mRNA sequence

ATGGACGGCCGCTCTTCACAGACGTTTTCAGGATTCCGGGTGGACTTTGGGGCTAGGTCCACTGCCTTATGGTCAGGTAATGACAAATTGTTGGTCGAGGACACGAGTGGTCTCAAGCAAGTAACCATGGTAGATAGCTTAGGTTTGAGAGCCTCCATCGGTTTGTATACGGTTGCAAAAAGTCATCAATTGCCTTATTCCCGCAATGAACATAGGTCGTCTCATGTGTTAGATCTTATTCATTGTGATCTTTGGGGTCCTTCTCCCGTCAAATCAAATTCGGGTTTTCTTTATTATGTTATTTTTATTGATGAAAAGGTATCTCAAAGCGATGGAGGTACCGAATTTACTAGTACTTGTTTCAAAACACATTTACGTAATTCTGGCATCTACCATCAACTCTCTTGTCCATATACACCTGCTCAAAATGGTCGTGCTGAGAGAAAATATCGTCATGTGAATGAGATTGGCTTGGCTCTTCTCTTTCACTCTCATCTTTCTCCTCGTTTTTGGGTTGATGCCTTCAGCACTACAGCTTATATTATCAATCGGTTGCCTACTCCACTTCTTGGAGCTTTCTCCCCGCAGCATCCCTTGTATTTTTTGGGGGTTATAGTCCTACTCATAAAGGGTTCCGCTAACCACATCCTTATCATATTGATTCATCCCCCTACCACTTCATCATTGCATATTCCTCGATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTGGATGAGTTTGTGGAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTACTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACAAGAGCCAAAACTGGTATATTCAAGCCTCGTCATCCAGCAAATCTTGGTATGTTTGGCTCATCTGGACTTCTTTTTGCTCTTCTTGCATCACAACTGAGCCAAAAGTATTCAAATCTGCAACTAAGAATCCTGCTTGGGTTGCTGCCATGGATGAAGAAATTTGAGCGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCCGTCGAGCGTTTCAAGCCTCGTCTTGTTGCCAAAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTGATAGCTTTACTCTCAAACTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTTGATAGCAAACCAGTCCACACTCCCATGGTTGTTTCTCAACACCTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTATAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATTACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGAATGCCCCTACTGTAGATCACTTTCTTGCTGTCAAACGTATTTTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCATCCATCCACTGTTCCTAGTATGCTAGTCGCTTATTTGGATACTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCGTTTCTTGGAGTGCCAAAAAGCAACCTACGGTCTCACGCTCCAGCTGTGAATCTGAATATCGTGCTCTTGCCACAACTACTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCATAG

Coding sequence (CDS)

ATGGACGGCCGCTCTTCACAGACGTTTTCAGGATTCCGGGTGGACTTTGGGGCTAGGTCCACTGCCTTATGGTCAGGTAATGACAAATTGTTGGTCGAGGACACGAGTGGTCTCAAGCAAGTAACCATGGTAGATAGCTTAGGTTTGAGAGCCTCCATCGGTTTGTATACGGTTGCAAAAAGTCATCAATTGCCTTATTCCCGCAATGAACATAGGTCGTCTCATGTGTTAGATCTTATTCATTGTGATCTTTGGGGTCCTTCTCCCGTCAAATCAAATTCGGGTTTTCTTTATTATGTTATTTTTATTGATGAAAAGGTATCTCAAAGCGATGGAGGTACCGAATTTACTAGTACTTGTTTCAAAACACATTTACGTAATTCTGGCATCTACCATCAACTCTCTTGTCCATATACACCTGCTCAAAATGGTCGTGCTGAGAGAAAATATCGTCATGTGAATGAGATTGGCTTGGCTCTTCTCTTTCACTCTCATCTTTCTCCTCGTTTTTGGGTTGATGCCTTCAGCACTACAGCTTATATTATCAATCGGTTGCCTACTCCACTTCTTGGAGCTTTCTCCCCGCAGCATCCCTTGTATTTTTTGGGGGTTATAGTCCTACTCATAAAGGGTTCCGCTAACCACATCCTTATCATATTGATTCATCCCCCTACCACTTCATCATTGCATATTCCTCGATCCAGTTCATCCCCGTGTGATATTTGTTCTGACCTTGTGGATGAGTTTGTGGAGGTTGATACTTCTCTTGCAGGTTCCACTTTGCCACCCTCGACTTCTAATTCGACCTCTATTGAACCTACTGTTGATTCCTCTTCTTTGGGCACTCATCCTATGATCACAAGAGCCAAAACTGGTATATTCAAGCCTCGTCATCCAGCAAATCTTGGTATGTTTGGCTCATCTGGACTTCTTTTTGCTCTTCTTGCATCACAACTGAGCCAAAAGTATTCAAATCTGCAACTAAGAATCCTGCTTGGGTTGCTGCCATGGATGAAGAAATTTGAGCGTTACAACAAAATGATACTTGGACTTTGGTTCCTCGCCCTGCCAACACCAACATCGTGGGCTCTAAATGGGTGTTTCGTATTAAATATTTGCCTGATGGATCCGTCGAGCGTTTCAAGCCTCGTCTTGTTGCCAAAGCAATCTAACCTTATCTATTTGCTTCTTTATGTTGATGACATTATTGTTACCGGCAACAACTCATCTCTTATTGATAGCTTTACTCTCAAACTTCATTCTGAGTTTGCTACCAAAGATTTGGGTTCTCTCAGTTACTTTCTTGGTCTTGAAGCTTCACCCACTCCTGATGGTCTCTTTATTAGTCAGTTAAAATATGCTCGAGATATTCTTACTCGTGCTCAGTTGCTTGATAGCAAACCAGTCCACACTCCCATGGTTGTTTCTCAACACCTGACTGCTGATGGTTCTCCTTTCTCTGATCCTACTCTCTATAGATCTCTTGTTGGCGCCCTTCAGTACTTGACTATTACGCGTCCAGATATTGCCTATGCTGTCAATTCTGTCAGTCAATTCTTGAATGCCCCTACTGTAGATCACTTTCTTGCTGTCAAACGTATTTTTCGCTATGTCAAAGGAACACTCCACTTTGGTCTTACCTTTCATCCATCCACTGTTCCTAGTATGCTAGTCGCTTATTTGGATACTGACTGGGCTGGTTGTCCCGATACTCGTCGTTCTACATCCGGCTATTCTATTTATCTTGGTAACAATCTCGTTTCTTGGAGTGCCAAAAAGCAACCTACGGTCTCACGCTCCAGCTGTGAATCTGAATATCGTGCTCTTGCCACAACTACTGCTGAACTTCTTTGGGTTACGCATCTTTTGCATGACCTCAAGGTCCCTATTTCATAG

Protein sequence

MDGRSSQTFSGFRVDFGARSTALWSGNDKLLVEDTSGLKQVTMVDSLGLRASIGLYTVAKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDEKVSQSDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQNGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIINRLPTPLLGAFSPQHPLYFLGVIVLLIKGSANHILIILIHPPTTSSLHIPRSSSSPCDICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVDSSSLGTHPMITRAKTGIFKPRHPANLGMFGSSGLLFALLASQLSQKYSNLQLRILLGLLPWMKKFERYNKMILGLWFLALPTPTSWALNGCFVLNICLMDPSSVSSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLNAPTVDHFLAVKRIFRYVKGTLHFGLTFHPSTVPSMLVAYLDTDWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTTAELLWVTHLLHDLKVPIS

Homology

[Close]

BLAST of Carg26168 vs. NCBI nr
Match: KAG7032431.1 (putative mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 1261.1 bits (3262), Expect = 0.0e+00
Identity = 631/631 (100.00%), Postives = 631/631 (100.00%), Query Frame = 0


Query: 1   MDGRSSQTFSGFRVDFGARSTALWSGNDKLLVEDTSGLKQVTMVDSLGLRASIGLYTVAK 60
           MDGRSSQTFSGFRVDFGARSTALWSGNDKLLVEDTSGLKQVTMVDSLGLRASIGLYTVAK
Sbjct: 1   MDGRSSQTFSGFRVDFGARSTALWSGNDKLLVEDTSGLKQVTMVDSLGLRASIGLYTVAK 60

Query: 61  SHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDEKVSQSDGGTEFTSTC 120
           SHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDEKVSQSDGGTEFTSTC
Sbjct: 61  SHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDEKVSQSDGGTEFTSTC 120

Query: 121 FKTHLRNSGIYHQLSCPYTPAQNGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAY 180
           FKTHLRNSGIYHQLSCPYTPAQNGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAY
Sbjct: 121 FKTHLRNSGIYHQLSCPYTPAQNGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAY 180

Query: 181 IINRLPTPLLGAFSPQHPLYFLGVIVLLIKGSANHILIILIHPPTTSSLHIPRSSSSPCD 240
           IINRLPTPLLGAFSPQHPLYFLGVIVLLIKGSANHILIILIHPPTTSSLHIPRSSSSPCD
Sbjct: 181 IINRLPTPLLGAFSPQHPLYFLGVIVLLIKGSANHILIILIHPPTTSSLHIPRSSSSPCD 240

Query: 241 ICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVDSSSLGTHPMITRAKTGIFKPRHPA 300
           ICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVDSSSLGTHPMITRAKTGIFKPRHPA
Sbjct: 241 ICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVDSSSLGTHPMITRAKTGIFKPRHPA 300

Query: 301 NLGMFGSSGLLFALLASQLSQKYSNLQLRILLGLLPWMKKFERYNKMILGLWFLALPTPT 360
           NLGMFGSSGLLFALLASQLSQKYSNLQLRILLGLLPWMKKFERYNKMILGLWFLALPTPT
Sbjct: 301 NLGMFGSSGLLFALLASQLSQKYSNLQLRILLGLLPWMKKFERYNKMILGLWFLALPTPT 360

Query: 361 SWALNGCFVLNICLMDPSSVSSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLH 420
           SWALNGCFVLNICLMDPSSVSSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLH
Sbjct: 361 SWALNGCFVLNICLMDPSSVSSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLH 420

Query: 421 SEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLT 480
           SEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLT
Sbjct: 421 SEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLT 480

Query: 481 ADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLNAPTVDHFLAVKRIFRYVKG 540
           ADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLNAPTVDHFLAVKRIFRYVKG
Sbjct: 481 ADGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLNAPTVDHFLAVKRIFRYVKG 540

Query: 541 TLHFGLTFHPSTVPSMLVAYLDTDWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRS 600
           TLHFGLTFHPSTVPSMLVAYLDTDWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRS
Sbjct: 541 TLHFGLTFHPSTVPSMLVAYLDTDWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRS 600

Query: 601 SCESEYRALATTTAELLWVTHLLHDLKVPIS 632
           SCESEYRALATTTAELLWVTHLLHDLKVPIS
Sbjct: 601 SCESEYRALATTTAELLWVTHLLHDLKVPIS 631

[Close]

BLAST of Carg26168 vs. NCBI nr
Match: RVW45095.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 734.2 bits (1894), Expect = 9.6e-208
Identity = 439/805 (54.53%), Postives = 484/805 (60.12%), Query Frame = 0


Query: 58   VAKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDE------------ 117
            +AK+H+LPYSRNEHRSSHVLDLIHCDLWGPSP+KSNSGFLYYVIFID+            
Sbjct: 498  LAKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSGFLYYVIFIDDHSRFTWLYPLKF 557

Query: 118  -----------------------KVSQSDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQ 177
                                   KV QSDGG EFT+TCFK HLR SGI+HQLSCPYTPAQ
Sbjct: 558  KSDFFDIFLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQ 617

Query: 178  NGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIINRLPTPLLGAFSPQHPLY-- 237
            NGRAERK+RHV E GLALLFHSHLSPRFWVDAFSTT YIINRLPTPLLG  SP   LY  
Sbjct: 618  NGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTTTYIINRLPTPLLGGKSPFELLYGY 677

Query: 238  ----------------------------------FLGV---------------------- 297
                                              FLG                       
Sbjct: 678  SPHYENFHPFGCHVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRH 737

Query: 298  -----------------------IVLLIKGSANHILIILIHPPTTSSLHIPRSSSSPCDI 357
                                   I   ++   +HI      PP+ SS HIPRS+SSPC+I
Sbjct: 738  AQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPPSPSS-HIPRSNSSPCNI 797

Query: 358  CSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVD-SSSLGTHPMITRAKTGIFKPRHPA 417
            CSDLVDE V+VDTSLAGS+LPP  S+  SIE   D SSSLG+HPMITRAK GIFK RHPA
Sbjct: 798  CSDLVDESVQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPA 857

Query: 418  NLGMFGSSGLLFALLASQLSQKYSNL------------QLRILLGLLPWMKKFERYNKMI 477
            NLG+ GSSGLL ALLAS   + + +             +++ L     W+      N  I
Sbjct: 858  NLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVHRPVNTNI 917

Query: 478  LG-LW-----------------------------------------------FLALPTPT 537
            +G  W                                                L+L    
Sbjct: 918  VGSKWVFRTKYFPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTN 977

Query: 538  SWA----------LNGC-----------------FVLNICLMDPS--------------- 597
             W           LNG                  F  ++CL+  +               
Sbjct: 978  KWPLRQLDVNNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRF 1037

Query: 598  -------------SVSSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFAT 631
                         + +SL +  +QS+LIYLLLYVDDIIVTGNN SL+DSFT KLHS+FAT
Sbjct: 1038 SSFFLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSKFAT 1097

[Close]

BLAST of Carg26168 vs. NCBI nr
Match: CAN73071.1 (hypothetical protein VITISV_032383 [Vitis vinifera])

HSP 1 Score: 653.7 bits (1685), Expect = 1.7e-183
Identity = 394/725 (54.34%), Postives = 436/725 (60.14%), Query Frame = 0


Query: 58   VAKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDE------------ 117
            +AK+H+LPYSRNEHRSSHVLDLIHCDLWGPSP+KSNSGFLYYVIFID+            
Sbjct: 468  LAKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKF 527

Query: 118  -----------------------KVSQSDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQ 177
                                   KV QSDGG EFT+TCFK HLR SGI+HQLSCPYT AQ
Sbjct: 528  KSDFFDIFLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTXAQ 587

Query: 178  NGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIINRLPTPLLGAFSPQH-PLYF 237
            NGRAERK+RHV E GLALLFH HLSPRFWV+ F                    QH  LY 
Sbjct: 588  NGRAERKHRHVTETGLALLFHXHLSPRFWVERF--------------------QHCNLYH 647

Query: 238  LGVIVLLIKGSANHILIILIHPPTTSSLHIPRSSSSPCDICSDLVDEFVEVDTSLAGSTL 297
              V       S +  LI+L                                   L G +L
Sbjct: 648  QPV-----AHSTSWWLILL-----------------------------------LTGFSL 707

Query: 298  PPSTSNSTSIEPTVD-SSSLGTHPMITRAKTGIFKPRHPANLGMFGSSGLLFALLAS--- 357
            PP  S+  SIE   D SSSLG+HPMITRAK GIFK RHPANLG+ GSSGLL ALL+S   
Sbjct: 708  PPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLSSTEP 767

Query: 358  --------------QLSQKYSNLQLRILLGLLP-----------WMKK--------FERY 417
                           + ++   LQ      L+P           W+ +         ER 
Sbjct: 768  KGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYFPDGSVERL 827

Query: 418  NKMILGLWF------------------------LALPTPTSWA----------LNGC--- 477
               ++   +                        L+L     W           LNG    
Sbjct: 828  KARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTE 887

Query: 478  --------------FVLNICLMDPS----------------------------SVSSLVL 537
                          F  ++CL+  +                            + +SL +
Sbjct: 888  HVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFV 947

Query: 538  LPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDG 597
              +QS+LIYLLLYVDDIIVTGNN SL+DSFT KLHSEFATKDLGSLSYFLGLEASPTPDG
Sbjct: 948  FHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASPTPDG 1007

Query: 598  LFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTIT 631
            LFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTIT
Sbjct: 1008 LFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTIT 1067

[Close]

BLAST of Carg26168 vs. NCBI nr
Match: CAN69607.1 (hypothetical protein VITISV_009561 [Vitis vinifera])

HSP 1 Score: 641.7 bits (1654), Expect = 6.5e-180
Identity = 398/746 (53.35%), Postives = 438/746 (58.71%), Query Frame = 0


Query: 59   AKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDE------------- 118
            AK+H+LPYSRNEHRSSHVLDLIHCDLWGPSP+KSNS FLYYVIFID+             
Sbjct: 431  AKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSSFLYYVIFIDDYSRFTWLYPLKFK 490

Query: 119  ----------------------KVSQSDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQN 178
                                  KV QSDG  EFT+TCFK HL  SGI+HQLS PYTPAQN
Sbjct: 491  SDFFDIFLQFQKFVENQHSARIKVFQSDGVVEFTNTCFKAHLHTSGIHHQLSYPYTPAQN 550

Query: 179  GRAERKYRHVNEIGLALLFHSHLSPRFWVDAFS--------TTAYIINRLPTPLLGAFSP 238
            GRAERK+RHV E GLALLFHSH+SPRFW DA +        +T++ I   P   LG +SP
Sbjct: 551  GRAERKHRHVTETGLALLFHSHISPRFWFDACNLYHQPVAHSTSWCI---PCIFLG-YSP 610

Query: 239  QH-------PLYFLGVIVLLIKGSANHILII--------------------LIH----PP 298
             H       P      I    +    H   +                    L H    PP
Sbjct: 611  SHKGFRCLEPTTSRLYITRHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPP 670

Query: 299  --TTSSLHIPRSSSSPCDICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVD-SSSLG 358
              T  S HIPRS+SSPC                   S+LPP  S+  SIE  VD SSSLG
Sbjct: 671  SXTFPSPHIPRSNSSPC-------------------SSLPPLASSPHSIELDVDSSSSLG 730

Query: 359  THPMITRAKTGIFKPRHPANLGMFGSSGLLFALLASQ----------------------- 418
            +HPMITRAK GIFK RHP NLG+ G SGLL A LAS                        
Sbjct: 731  SHPMITRAKAGIFKTRHPVNLGVLGFSGLLSAFLASTEPKGFKSAAKNPTWLAAMDEEVQ 790

Query: 419  ---------LSQKYSNLQLRILLGL----------LPWMKKFERYNKMILGLWFLALPTP 478
                     L  +  N  +R+   L          L +   F    K       L+L   
Sbjct: 791  ALQQNGTWILVSRPVNTNIRLKARLVAKGYTQVLGLDYTDTFSPVVKATTVRVVLSLAVT 850

Query: 479  TSWA----------LNGC-----------------FVLNICLMDPSSV------------ 538
              W           LNG                  F  ++CL+  +              
Sbjct: 851  NKWPLRQLDVKNTFLNGTLTEHVYMEQPPGYIDSRFPTHVCLLKKALYGLKQAPRAWFQR 910

Query: 539  ----------------SSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFA 598
                            +SL +  +QS+LIYLLLYVDDIIVTGNN SL+DSFT KLHSEFA
Sbjct: 911  FSSFFLTLGFSSSRVDTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTCKLHSEFA 970

Query: 599  TKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGS 631
            TKDLGSLSYFLGLEASPTPDGLFI QLKYARDILT  QLLDSKPVHTPMVVSQHLT  G 
Sbjct: 971  TKDLGSLSYFLGLEASPTPDGLFIGQLKYARDILTLTQLLDSKPVHTPMVVSQHLTVAGF 1030

[Close]

BLAST of Carg26168 vs. NCBI nr
Match: RVW43615.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 626.3 bits (1614), Expect = 2.8e-175
Identity = 384/704 (54.55%), Postives = 423/704 (60.09%), Query Frame = 0


Query: 124  HLRNSGIYHQLSCPYTPAQNGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIIN 183
            HLR SGI+HQLSCPYTPAQNGRAERK+RHV E GLALLFHSHLSPRFWVDAFST  YIIN
Sbjct: 415  HLRTSGIHHQLSCPYTPAQNGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTATYIIN 474

Query: 184  RLPTPLLGAFSPQHPLY------------------------------------FLGV--- 243
            RLPTPLLG  SP   LY                                    FLG    
Sbjct: 475  RLPTPLLGGKSPFELLYGHSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLGYSPS 534

Query: 244  ------------------------------------------IVLLIKGSANHILIILIH 303
                                                      I   ++   +HI      
Sbjct: 535  HKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPS 594

Query: 304  PPTTSSLHIPRSSSSPCDICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVD-SSSLG 363
            PP+ SS HIPRS+SSPC+ICSDLVDE V+VDTSLAGS+LPP  S+  SIE   D SSSLG
Sbjct: 595  PPSPSS-HIPRSNSSPCNICSDLVDESVKVDTSLAGSSLPPLASSPHSIEHAADSSSSLG 654

Query: 364  THPMITRAKTGIFKPRHPANLGMFGSSGLLFALLAS-----------------QLSQKYS 423
            +HPMITRAK GIFK RHPANLG+ GSSGLL ALLAS                  + ++  
Sbjct: 655  SHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQ 714

Query: 424  NLQLRILLGLLP-----------WMKK--------FERYNKMILGLWF------------ 483
             LQ      L+P           W+ +         ER    ++   +            
Sbjct: 715  ALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTDTF 774

Query: 484  ------------LALPTPTSWA----------LNGC-----------------FVLNICL 543
                        L+L     W           LNG                  F  ++CL
Sbjct: 775  SPVVKATTVRVVLSLAITNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCL 834

Query: 544  MDPS----------------------------SVSSLVLLPKQSNLIYLLLYVDDIIVTG 603
            +  +                            + +SL +  +QS+LIYLLLYVDDIIVTG
Sbjct: 835  LKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTG 894

Query: 604  NNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDS 631
            NN SL+DSFT KLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDS
Sbjct: 895  NNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDS 954

[Close]

BLAST of Carg26168 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 1.8e-63
Identity = 119/226 (52.65%), Postives = 166/226 (73.45%), Query Frame = 0


Query: 393 IYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLK 452
           +YLLLYVDDI++TG++++L++    +L S F+ KDLG + YFLG++    P GLF+SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 453 YARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYA 512
           YA  IL  A +LD KP+ TP+ +  + +   + + DP+ +RS+VGALQYLT+TRPDI+YA
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 513 VNSVSQFLNAPTVDHFLAVKRIFRYVKGTLHFGLTFHPSTVPSMLVAYLDTDWAGCPDTR 572
           VN V Q ++ PT+  F  +KR+ RYVKGT+  GL  H ++  + + A+ D+DWAGC  TR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN-VQAFCDSDWAGCTSTR 180

Query: 573 RSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTTAELLW 619
           RST+G+  +LG N++SWSAK+QPTVSRSS E+EYRALA T AEL W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Carg26168 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.3e-60
Identity = 127/291 (43.64%), Postives = 183/291 (62.89%), Query Frame = 0


Query: 343  RYNKMILGLWFLALPTPTSWALN-GCFVLNICLMDPSSVSSLVLLPKQSNLIYLLLYVDD 402
            R  K I GL       P +W +    ++L +  ++  S +SL +L +  ++IY+L+YVDD
Sbjct: 1081 RLRKAIYGL----KQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDD 1140

Query: 403  IIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRA 462
            I++TGN++ L+      L   F+ K+   L YFLG+EA   P GL +SQ +Y  D+L R 
Sbjct: 1141 ILITGNDTVLLKHTLDALSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLART 1200

Query: 463  QLLDSKPVHTPMVVSQHLTA-DGSPFSDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFL 522
             +L +KPV TPM  S  LT   G+   DPT YR +VG+LQYL  TRPD++YAVN +SQ++
Sbjct: 1201 NMLTAKPVATPMATSPKLTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYM 1260

Query: 523  NAPTVDHFLAVKRIFRYVKGTLHFGLTFHPSTVPSMLVAYLDTDWAGCPDTRRSTSGYSI 582
            + PT DH+ A+KR+ RY+ GT   G+        S L AY D DWAG  D   ST+GY +
Sbjct: 1261 HMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLS-LHAYSDADWAGDTDDYVSTNGYIV 1320

Query: 583  YLGNNLVSWSAKKQPTVSRSSCESEYRALATTTAELLWVTHLLHDLKVPIS 632
            YLG++ +SWS+KKQ  V RSS E+EYR++A T++EL W+  LL +L + +S
Sbjct: 1321 YLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGIQLS 1366

HSP 2 Score: 107.1 bits (266), Expect = 7.5e-22
Identity = 65/178 (36.52%), Postives = 90/178 (50.56%), Query Frame = 0


Query: 58  VAKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFID-----------EK 117
           + KSH++P+S +   SS  L+ I+ D+W  SP+ S   + YYVIF+D           ++
Sbjct: 484 INKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQ 543

Query: 118 VSQ------------------------SDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQ 177
            SQ                        SD G EF     + +L   GI H  S P+TP  
Sbjct: 544 KSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEH 603

Query: 178 NGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIINRLPTPLLGAFSPQHPLY 201
           NG +ERK+RH+ E+GL LL H+ +   +W  AFS   Y+INRLPTPLL   SP   L+
Sbjct: 604 NGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLF 658

[Close]

BLAST of Carg26168 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.7e-59
Identity = 119/265 (44.91%), Postives = 176/265 (66.42%), Query Frame = 0


Query: 368  FVLNICLMDPSSVSSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKD 427
            ++L I  ++  S +SL +L +  +++Y+L+YVDDI++TGN+ +L+ +    L   F+ KD
Sbjct: 1120 YLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKD 1179

Query: 428  LGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTA-DGSPF 487
               L YFLG+EA   P GL +SQ +Y  D+L R  ++ +KPV TPM  S  L+   G+  
Sbjct: 1180 HEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKL 1239

Query: 488  SDPTLYRSLVGALQYLTITRPDIAYAVNSVSQFLNAPTVDHFLAVKRIFRYVKGTLHFGL 547
            +DPT YR +VG+LQYL  TRPDI+YAVN +SQF++ PT +H  A+KRI RY+ GT + G+
Sbjct: 1240 TDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGI 1299

Query: 548  TFHPSTVPSMLVAYLDTDWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEY 607
                    S L AY D DWAG  D   ST+GY +YLG++ +SWS+KKQ  V RSS E+EY
Sbjct: 1300 FLKKGNTLS-LHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEY 1359

Query: 608  RALATTTAELLWVTHLLHDLKVPIS 632
            R++A T++E+ W+  LL +L + ++
Sbjct: 1360 RSVANTSSEMQWICSLLTELGIRLT 1383

HSP 2 Score: 102.1 bits (253), Expect = 2.4e-20
Identity = 61/178 (34.27%), Postives = 90/178 (50.56%), Query Frame = 0


Query: 58  VAKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFID-----------EK 117
           + KS+++P+S++   S+  L+ I+ D+W  SP+ S+  + YYVIF+D           ++
Sbjct: 505 INKSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQ 564

Query: 118 VSQ------------------------SDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQ 177
            SQ                        SD G EF +     +    GI H  S P+TP  
Sbjct: 565 KSQVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTPEH 624

Query: 178 NGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIINRLPTPLLGAFSPQHPLY 201
           NG +ERK+RH+ E GL LL H+ +   +W  AF+   Y+INRLPTPLL   SP   L+
Sbjct: 625 NGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLF 679

[Close]

BLAST of Carg26168 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 145.2 bits (365), Expect = 2.5e-33
Identity = 93/300 (31.00%), Postives = 157/300 (52.33%), Query Frame = 0


Query: 343  RYNKMILGL------WFLALPTPTSWALNGCFVLNICLMDPSSVSSLVLLPKQSNL---I 402
            + NK I GL      WF         AL  C  +N      SSV   + +  + N+   I
Sbjct: 1033 KLNKAIYGLKQAARCWFEVF----EQALKECEFVN------SSVDRCIYILDKGNINENI 1092

Query: 403  YLLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKY 462
            Y+LLYVDD+++   + + +++F   L  +F   DL  + +F+G+      D +++SQ  Y
Sbjct: 1093 YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAY 1152

Query: 463  ARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTI-TRPDIAYA 522
             + IL++  + +   V TP+    +     S     T  RSL+G L Y+ + TRPD+  A
Sbjct: 1153 VKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTA 1212

Query: 523  VNSVSQFLNAPTVDHFLAVKRIFRYVKGTLHFGLTFHPS-TVPSMLVAYLDTDWAGCPDT 582
            VN +S++ +    + +  +KR+ RY+KGT+   L F  +    + ++ Y+D+DWAG    
Sbjct: 1213 VNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEID 1272

Query: 583  RRSTSGYSIYLGN-NLVSWSAKKQPTVSRSSCESEYRALATTTAELLWVTHLLHDLKVPI 631
            R+ST+GY   + + NL+ W+ K+Q +V+ SS E+EY AL     E LW+  LL  + + +
Sbjct: 1273 RKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKL 1322

[Close]

BLAST of Carg26168 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 9.5e-33
Identity = 92/248 (37.10%), Postives = 130/248 (52.42%), Query Frame = 0


Query: 389  QSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLE--ASPTPDGL 448
            ++N I LLLYVDD+++ G +  LI      L   F  KDLG     LG++     T   L
Sbjct: 999  ENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKL 1058

Query: 449  FISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFS-------DPTLYRSLVGAL 508
            ++SQ KY   +L R  + ++KPV TP+     L+    P +           Y S VG+L
Sbjct: 1059 WLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSL 1118

Query: 509  QY-LTITRPDIAYAVNSVSQFLNAPTVDHFLAVKRIFRYVKGTLHFGLTFHPSTVPSMLV 568
             Y +  TRPDIA+AV  VS+FL  P  +H+ AVK I RY++GT    L F  S    +L 
Sbjct: 1119 MYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGS--DPILK 1178

Query: 569  AYLDTDWAGCPDTRRSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTTAELLW 627
             Y D D AG  D R+S++GY        +SW +K Q  V+ S+ E+EY A   T  E++W
Sbjct: 1179 GYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIW 1238

HSP 2 Score: 82.0 bits (201), Expect = 2.6e-14
Identity = 50/172 (29.07%), Postives = 78/172 (45.35%), Query Frame = 0


Query: 60  KSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDE-------------- 119
           K H++ +  +  R  ++LDL++ D+ GP  ++S  G  Y+V FID+              
Sbjct: 464 KQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKD 523

Query: 120 ---------------------KVSQSDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQNG 179
                                K  +SD G E+TS  F+ +  + GI H+ + P TP  NG
Sbjct: 524 QVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNG 583

Query: 180 RAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIINRLPTPLLGAFSPQ 197
            AER  R + E   ++L  + L   FW +A  T  Y+INR P+  L    P+
Sbjct: 584 VAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEIPE 635

[Close]

BLAST of Carg26168 vs. ExPASy TrEMBL
Match: A0A438EBA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2065 PE=4 SV=1)

HSP 1 Score: 734.2 bits (1894), Expect = 4.7e-208
Identity = 439/805 (54.53%), Postives = 484/805 (60.12%), Query Frame = 0


Query: 58   VAKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDE------------ 117
            +AK+H+LPYSRNEHRSSHVLDLIHCDLWGPSP+KSNSGFLYYVIFID+            
Sbjct: 498  LAKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSGFLYYVIFIDDHSRFTWLYPLKF 557

Query: 118  -----------------------KVSQSDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQ 177
                                   KV QSDGG EFT+TCFK HLR SGI+HQLSCPYTPAQ
Sbjct: 558  KSDFFDIFLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQ 617

Query: 178  NGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIINRLPTPLLGAFSPQHPLY-- 237
            NGRAERK+RHV E GLALLFHSHLSPRFWVDAFSTT YIINRLPTPLLG  SP   LY  
Sbjct: 618  NGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTTTYIINRLPTPLLGGKSPFELLYGY 677

Query: 238  ----------------------------------FLGV---------------------- 297
                                              FLG                       
Sbjct: 678  SPHYENFHPFGCHVYPCLRDYMPNKLSPRSIPCIFLGYSPSHKGFRCLDPTTSRLYITRH 737

Query: 298  -----------------------IVLLIKGSANHILIILIHPPTTSSLHIPRSSSSPCDI 357
                                   I   ++   +HI      PP+ SS HIPRS+SSPC+I
Sbjct: 738  AQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPSPPSPSS-HIPRSNSSPCNI 797

Query: 358  CSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVD-SSSLGTHPMITRAKTGIFKPRHPA 417
            CSDLVDE V+VDTSLAGS+LPP  S+  SIE   D SSSLG+HPMITRAK GIFK RHPA
Sbjct: 798  CSDLVDESVQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPA 857

Query: 418  NLGMFGSSGLLFALLASQLSQKYSNL------------QLRILLGLLPWMKKFERYNKMI 477
            NLG+ GSSGLL ALLAS   + + +             +++ L     W+      N  I
Sbjct: 858  NLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVHRPVNTNI 917

Query: 478  LG-LW-----------------------------------------------FLALPTPT 537
            +G  W                                                L+L    
Sbjct: 918  VGSKWVFRTKYFPDGSVERLKARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTN 977

Query: 538  SWA----------LNGC-----------------FVLNICLMDPS--------------- 597
             W           LNG                  F  ++CL+  +               
Sbjct: 978  KWPLRQLDVNNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRF 1037

Query: 598  -------------SVSSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFAT 631
                         + +SL +  +QS+LIYLLLYVDDIIVTGNN SL+DSFT KLHS+FAT
Sbjct: 1038 SSFFLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSKFAT 1097

[Close]

BLAST of Carg26168 vs. ExPASy TrEMBL
Match: A5C5R8 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_032383 PE=4 SV=1)

HSP 1 Score: 653.7 bits (1685), Expect = 8.0e-184
Identity = 394/725 (54.34%), Postives = 436/725 (60.14%), Query Frame = 0


Query: 58   VAKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDE------------ 117
            +AK+H+LPYSRNEHRSSHVLDLIHCDLWGPSP+KSNSGFLYYVIFID+            
Sbjct: 468  LAKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKF 527

Query: 118  -----------------------KVSQSDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQ 177
                                   KV QSDGG EFT+TCFK HLR SGI+HQLSCPYT AQ
Sbjct: 528  KSDFFDIFLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTXAQ 587

Query: 178  NGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIINRLPTPLLGAFSPQH-PLYF 237
            NGRAERK+RHV E GLALLFH HLSPRFWV+ F                    QH  LY 
Sbjct: 588  NGRAERKHRHVTETGLALLFHXHLSPRFWVERF--------------------QHCNLYH 647

Query: 238  LGVIVLLIKGSANHILIILIHPPTTSSLHIPRSSSSPCDICSDLVDEFVEVDTSLAGSTL 297
              V       S +  LI+L                                   L G +L
Sbjct: 648  QPV-----AHSTSWWLILL-----------------------------------LTGFSL 707

Query: 298  PPSTSNSTSIEPTVD-SSSLGTHPMITRAKTGIFKPRHPANLGMFGSSGLLFALLAS--- 357
            PP  S+  SIE   D SSSLG+HPMITRAK GIFK RHPANLG+ GSSGLL ALL+S   
Sbjct: 708  PPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLSSTEP 767

Query: 358  --------------QLSQKYSNLQLRILLGLLP-----------WMKK--------FERY 417
                           + ++   LQ      L+P           W+ +         ER 
Sbjct: 768  KGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFRTKYFPDGSVERL 827

Query: 418  NKMILGLWF------------------------LALPTPTSWA----------LNGC--- 477
               ++   +                        L+L     W           LNG    
Sbjct: 828  KARLVAKGYTQVPGLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTE 887

Query: 478  --------------FVLNICLMDPS----------------------------SVSSLVL 537
                          F  ++CL+  +                            + +SL +
Sbjct: 888  HVYMEQPPGYIDPRFPTHVCLLKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFV 947

Query: 538  LPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDG 597
              +QS+LIYLLLYVDDIIVTGNN SL+DSFT KLHSEFATKDLGSLSYFLGLEASPTPDG
Sbjct: 948  FHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASPTPDG 1007

Query: 598  LFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTIT 631
            LFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLT  GSPFS+PTLYRSLVGALQYLTIT
Sbjct: 1008 LFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTVAGSPFSNPTLYRSLVGALQYLTIT 1067

[Close]

BLAST of Carg26168 vs. ExPASy TrEMBL
Match: A5B2A6 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_009561 PE=4 SV=1)

HSP 1 Score: 641.7 bits (1654), Expect = 3.1e-180
Identity = 398/746 (53.35%), Postives = 438/746 (58.71%), Query Frame = 0


Query: 59   AKSHQLPYSRNEHRSSHVLDLIHCDLWGPSPVKSNSGFLYYVIFIDE------------- 118
            AK+H+LPYSRNEHRSSHVLDLIHCDLWGPSP+KSNS FLYYVIFID+             
Sbjct: 431  AKNHRLPYSRNEHRSSHVLDLIHCDLWGPSPIKSNSSFLYYVIFIDDYSRFTWLYPLKFK 490

Query: 119  ----------------------KVSQSDGGTEFTSTCFKTHLRNSGIYHQLSCPYTPAQN 178
                                  KV QSDG  EFT+TCFK HL  SGI+HQLS PYTPAQN
Sbjct: 491  SDFFDIFLQFQKFVENQHSARIKVFQSDGVVEFTNTCFKAHLHTSGIHHQLSYPYTPAQN 550

Query: 179  GRAERKYRHVNEIGLALLFHSHLSPRFWVDAFS--------TTAYIINRLPTPLLGAFSP 238
            GRAERK+RHV E GLALLFHSH+SPRFW DA +        +T++ I   P   LG +SP
Sbjct: 551  GRAERKHRHVTETGLALLFHSHISPRFWFDACNLYHQPVAHSTSWCI---PCIFLG-YSP 610

Query: 239  QH-------PLYFLGVIVLLIKGSANHILII--------------------LIH----PP 298
             H       P      I    +    H   +                    L H    PP
Sbjct: 611  SHKGFRCLEPTTSRLYITRHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPP 670

Query: 299  --TTSSLHIPRSSSSPCDICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVD-SSSLG 358
              T  S HIPRS+SSPC                   S+LPP  S+  SIE  VD SSSLG
Sbjct: 671  SXTFPSPHIPRSNSSPC-------------------SSLPPLASSPHSIELDVDSSSSLG 730

Query: 359  THPMITRAKTGIFKPRHPANLGMFGSSGLLFALLASQ----------------------- 418
            +HPMITRAK GIFK RHP NLG+ G SGLL A LAS                        
Sbjct: 731  SHPMITRAKAGIFKTRHPVNLGVLGFSGLLSAFLASTEPKGFKSAAKNPTWLAAMDEEVQ 790

Query: 419  ---------LSQKYSNLQLRILLGL----------LPWMKKFERYNKMILGLWFLALPTP 478
                     L  +  N  +R+   L          L +   F    K       L+L   
Sbjct: 791  ALQQNGTWILVSRPVNTNIRLKARLVAKGYTQVLGLDYTDTFSPVVKATTVRVVLSLAVT 850

Query: 479  TSWA----------LNGC-----------------FVLNICLMDPSSV------------ 538
              W           LNG                  F  ++CL+  +              
Sbjct: 851  NKWPLRQLDVKNTFLNGTLTEHVYMEQPPGYIDSRFPTHVCLLKKALYGLKQAPRAWFQR 910

Query: 539  ----------------SSLVLLPKQSNLIYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFA 598
                            +SL +  +QS+LIYLLLYVDDIIVTGNN SL+DSFT KLHSEFA
Sbjct: 911  FSSFFLTLGFSSSRVDTSLFVFHQQSSLIYLLLYVDDIIVTGNNPSLLDSFTCKLHSEFA 970

Query: 599  TKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDSKPVHTPMVVSQHLTADGS 631
            TKDLGSLSYFLGLEASPTPDGLFI QLKYARDILT  QLLDSKPVHTPMVVSQHLT  G 
Sbjct: 971  TKDLGSLSYFLGLEASPTPDGLFIGQLKYARDILTLTQLLDSKPVHTPMVVSQHLTVAGF 1030

[Close]

BLAST of Carg26168 vs. ExPASy TrEMBL
Match: A0A438E275 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3495 PE=3 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 1.4e-175
Identity = 383/704 (54.40%), Postives = 423/704 (60.09%), Query Frame = 0


Query: 124  HLRNSGIYHQLSCPYTPAQNGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIIN 183
            HLR SGI+HQLSCPYTPAQNGRAERK+RHV E GLALLFHSHLSPRFWVDAFST  YIIN
Sbjct: 508  HLRTSGIHHQLSCPYTPAQNGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTATYIIN 567

Query: 184  RLPTPLLGAFSPQHPLY------------------------------------FLGV--- 243
             LPTPLLG  SP   LY                                    FLG    
Sbjct: 568  WLPTPLLGGKSPFELLYDYSPHYENFHPFGCRVYPCLRDYMSNKLSPRSIPCIFLGYSPS 627

Query: 244  ------------------------------------------IVLLIKGSANHILIILIH 303
                                                      I   ++   +HI      
Sbjct: 628  HKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPS 687

Query: 304  PPTTSSLHIPRSSSSPCDICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVD-SSSLG 363
            PP+ SS HIPRS+SSPC+ICSDLVDE V+VDTSLAG +LPP  S+  SIE   D SSSLG
Sbjct: 688  PPSPSS-HIPRSNSSPCNICSDLVDESVQVDTSLAGCSLPPLASSPHSIEHAADSSSSLG 747

Query: 364  THPMITRAKTGIFKPRHPANLGMFGSSGLLFALLAS-----------------QLSQKYS 423
            +HPMITRAK GIFK RHPANLG+ GSSGLLFALLAS                  + ++  
Sbjct: 748  SHPMITRAKAGIFKTRHPANLGVLGSSGLLFALLASTEPKGFKSAAKNPAWLAAMDEEVQ 807

Query: 424  NLQLRILLGLLP-----------WMKK--------FERYNKMILGLWF------------ 483
             LQ      L+P           W+ +         ER    ++   +            
Sbjct: 808  ALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTHVPGLDYTDIF 867

Query: 484  ------------LALPTPTSWA----------LNGC-----------------FVLNICL 543
                        L+L     W           LNG                  F  ++CL
Sbjct: 868  SPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDHRFPTHVCL 927

Query: 544  MDPS----------------------------SVSSLVLLPKQSNLIYLLLYVDDIIVTG 603
            +  +                            + +SL +  +QS+LIYLLLYVDDIIVTG
Sbjct: 928  LKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTG 987

Query: 604  NNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDS 631
            NN SL+DSFT KLHSEFATKDLGSL+YFLGLEASPTPDGLFISQLKYARDILTRAQLLDS
Sbjct: 988  NNPSLLDSFTRKLHSEFATKDLGSLNYFLGLEASPTPDGLFISQLKYARDILTRAQLLDS 1047

[Close]

BLAST of Carg26168 vs. ExPASy TrEMBL
Match: A0A438E763 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_452 PE=4 SV=1)

HSP 1 Score: 626.3 bits (1614), Expect = 1.4e-175
Identity = 384/704 (54.55%), Postives = 423/704 (60.09%), Query Frame = 0


Query: 124  HLRNSGIYHQLSCPYTPAQNGRAERKYRHVNEIGLALLFHSHLSPRFWVDAFSTTAYIIN 183
            HLR SGI+HQLSCPYTPAQNGRAERK+RHV E GLALLFHSHLSPRFWVDAFST  YIIN
Sbjct: 415  HLRTSGIHHQLSCPYTPAQNGRAERKHRHVTETGLALLFHSHLSPRFWVDAFSTATYIIN 474

Query: 184  RLPTPLLGAFSPQHPLY------------------------------------FLGV--- 243
            RLPTPLLG  SP   LY                                    FLG    
Sbjct: 475  RLPTPLLGGKSPFELLYGHSPHYENFHPFGCRVYPCLRDYMPNKLSPRSIPCIFLGYSPS 534

Query: 244  ------------------------------------------IVLLIKGSANHILIILIH 303
                                                      I   ++   +HI      
Sbjct: 535  HKGFRCLDPTTSRLYITRHAQFDETHFPTVPSSQAQPLSSLHISNFLEPRLHHIDPSPPS 594

Query: 304  PPTTSSLHIPRSSSSPCDICSDLVDEFVEVDTSLAGSTLPPSTSNSTSIEPTVD-SSSLG 363
            PP+ SS HIPRS+SSPC+ICSDLVDE V+VDTSLAGS+LPP  S+  SIE   D SSSLG
Sbjct: 595  PPSPSS-HIPRSNSSPCNICSDLVDESVKVDTSLAGSSLPPLASSPHSIEHAADSSSSLG 654

Query: 364  THPMITRAKTGIFKPRHPANLGMFGSSGLLFALLAS-----------------QLSQKYS 423
            +HPMITRAK GIFK RHPANLG+ GSSGLL ALLAS                  + ++  
Sbjct: 655  SHPMITRAKAGIFKTRHPANLGVLGSSGLLSALLASTEPKGFKSAAKNPAWLAAMDEEVQ 714

Query: 424  NLQLRILLGLLP-----------WMKK--------FERYNKMILGLWF------------ 483
             LQ      L+P           W+ +         ER    ++   +            
Sbjct: 715  ALQQNGTWILVPRPVNTNIVGSKWVFRTKYLPDGSVERLKARLVAKGYTQVPGLDYTDTF 774

Query: 484  ------------LALPTPTSWA----------LNGC-----------------FVLNICL 543
                        L+L     W           LNG                  F  ++CL
Sbjct: 775  SPVVKATTVRVVLSLAITNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDPRFPTHVCL 834

Query: 544  MDPS----------------------------SVSSLVLLPKQSNLIYLLLYVDDIIVTG 603
            +  +                            + +SL +  +QS+LIYLLLYVDDIIVTG
Sbjct: 835  LKKALYGLKQAPRAWFQRFSSFLLTLGFSCSRADTSLFVFHQQSSLIYLLLYVDDIIVTG 894

Query: 604  NNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDS 631
            NN SL+DSFT KLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDS
Sbjct: 895  NNPSLLDSFTRKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYARDILTRAQLLDS 954

[Close]

BLAST of Carg26168 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 245.4 bits (625), Expect = 1.3e-64
Identity = 119/226 (52.65%), Postives = 166/226 (73.45%), Query Frame = 0


Query: 393 IYLLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLK 452
           +YLLLYVDDI++TG++++L++    +L S F+ KDLG + YFLG++    P GLF+SQ K
Sbjct: 1   MYLLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTK 60

Query: 453 YARDILTRAQLLDSKPVHTPMVVSQHLTADGSPFSDPTLYRSLVGALQYLTITRPDIAYA 512
           YA  IL  A +LD KP+ TP+ +  + +   + + DP+ +RS+VGALQYLT+TRPDI+YA
Sbjct: 61  YAEQILNNAGMLDCKPMSTPLPLKLNSSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYA 120

Query: 513 VNSVSQFLNAPTVDHFLAVKRIFRYVKGTLHFGLTFHPSTVPSMLVAYLDTDWAGCPDTR 572
           VN V Q ++ PT+  F  +KR+ RYVKGT+  GL  H ++  + + A+ D+DWAGC  TR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLN-VQAFCDSDWAGCTSTR 180

Query: 573 RSTSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTTAELLW 619
           RST+G+  +LG N++SWSAK+QPTVSRSS E+EYRALA T AEL W
Sbjct: 181 RSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Carg26168 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 206.1 bits (523), Expect = 8.5e-53
Identity = 109/238 (45.80%), Postives = 148/238 (62.18%), Query Frame = 0


Query: 395 LLLYVDDIIVTGNNSSLIDSFTLKLHSEFATKDLGSLSYFLGLEASPTPDGLFISQLKYA 454
           +L+YVDDII+  NN + +D    +L S F  +DLG L YFLGLE + +  G+ I Q KYA
Sbjct: 280 VLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIARSAAGINICQRKYA 339

Query: 455 RDILTRAQLLDSKPVHTPMVVSQHLTA-DGSPFSDPTLYRSLVGALQYLTITRPDIAYAV 514
            D+L    LL  KP   PM  S   +A  G  F D   YR L+G L YL ITR DI++AV
Sbjct: 340 LDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAYRRLIGRLMYLQITRLDISFAV 399

Query: 515 NSVSQFLNAPTVDHFLAVKRIFRYVKGTLHFGLTFHPSTVPSMLVAYLDTDWAGCPDTRR 574
           N +SQF  AP + H  AV +I  Y+KGT+  GL F+ S     L  + D  +  C DTRR
Sbjct: 400 NKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGL-FYSSQAEMQLQVFSDASFQSCKDTRR 459

Query: 575 STSGYSIYLGNNLVSWSAKKQPTVSRSSCESEYRALATTTAELLWVTHLLHDLKVPIS 632
           ST+GY ++LG +L+SW +KKQ  VS+SS E+EYRAL+  T E++W+     +L++P+S
Sbjct: 460 STNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFATDEMMWLAQFFRELQLPLS 516

[Close]

BLAST of Carg26168 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 83.2 bits (204), Expect = 8.3e-16
Identity = 40/78 (51.28%), Postives = 53/78 (67.95%), Query Frame = 0


Query: 501 YLTITRPDIAYAVNSVSQFLNAPTVDHFLAVKRIFRYVKGTLHFGLTFHPSTVPSMLVAY 560
           YLTITRPD+ +AVN +SQF +A       AV ++  YVKGT+  GL F+ +T    L A+
Sbjct: 2   YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGL-FYSATSDLQLKAF 61

Query: 561 LDTDWAGCPDTRRSTSGY 579
            D+DWA CPDTRRS +G+
Sbjct: 62  ADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Carg26168 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7032431.1	0.0e+00	100.00	putative mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrospe...	[more]
RVW45095.1	9.6e-208	54.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
CAN73071.1	1.7e-183	54.34	hypothetical protein VITISV_032383 [Vitis vinifera]	[more]
CAN69607.1	6.5e-180	53.35	hypothetical protein VITISV_009561 [Vitis vinifera]	[more]
RVW43615.1	2.8e-175	54.55	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Carg26168 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92519	1.8e-63	52.65	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZT94	5.3e-60	43.64	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.7e-59	44.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	2.5e-33	31.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	9.5e-33	37.10	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Carg26168 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438EBA0	4.7e-208	54.53	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5C5R8	8.0e-184	54.34	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A5B2A6	3.1e-180	53.35	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438E275	1.4e-175	54.40	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438E763	1.4e-175	54.55	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]

BLAST of Carg26168 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	1.3e-64	52.65	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	8.5e-53	45.80	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	8.3e-16	51.28	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 67..202 e-value: 1.5E-19 score: 72.1
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 390..473 e-value: 8.9E-15 score: 54.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..278
None	No IPR available	PANTHER	PTHR11439:SF330	SUBFAMILY NOT NAMED	coord: 379..513
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 379..513
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 558..631 e-value: 1.09736E-35 score: 129.125
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 110..203 score: 11.023956
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 386..630
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 72..197

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26168-RA	Carg26168-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0003676	nucleic acid binding