Carg26160 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26160
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 3413954 .. 3414226 (-)
RNA-Seq ExpressionCarg26160
SyntenyCarg26160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGGCTCGTAGAGCGAACGTGGTGGCCTGTGGCTTGAACGAAGATAAGCGACCGAACAGGGGACGCCTCGAAGAGGGGGGATGCTATGCTAGGAAGTTGCTTGTCGATTCTCTACGTTCGGTCGGGAAAACGAAGAGCCACATTGAAGTTCTCTATATACATTCTACAAGTAGTAAAATTTTAAAATATGCAAGCAATCCATTTTTTGTTTTTTATTTTATTTTGGAAGAAAAATTCAAGGTTCTAATTGGCAAGGAATTGTTAGCTTAA

mRNA sequence

ATGTTGGCTCGTAGAGCGAACGTGGTGGCCTGTGGCTTGAACGAAGATAAGCGACCGAACAGGGGACGCCTCGAAGAGGGGGGATGCTATGCTAGGAAGTTGCTTGTCGATTCTCTACGTTCGGTCGGGAAAACGAAGAGCCACATTGAAGTTCTCTATATACATTCTACAAAAAAATTCAAGGTTCTAATTGGCAAGGAATTGTTAGCTTAA

Coding sequence (CDS)

ATGTTGGCTCGTAGAGCGAACGTGGTGGCCTGTGGCTTGAACGAAGATAAGCGACCGAACAGGGGACGCCTCGAAGAGGGGGGATGCTATGCTAGGAAGTTGCTTGTCGATTCTCTACGTTCGGTCGGGAAAACGAAGAGCCACATTGAAGTTCTCTATATACATTCTACAAAAAAATTCAAGGTTCTAATTGGCAAGGAATTGTTAGCTTAA

Protein sequence

MLARRANVVACGLNEDKRPNRGRLEEGGCYARKLLVDSLRSVGKTKSHIEVLYIHSTKKFKVLIGKELLA
Homology
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BLAST of Carg26160 vs. NCBI nr
Match: KAG7020581.1 (hypothetical protein SDJN02_17267, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 4.0e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MLARRANVVACGLNEDKRPNRGRLEEGGCYARKLLVDSLRSVGKTKSHIEVLYIHSTKKF 60
          MLARRANVVACGLNEDKRPNRGRLEEGGCYARKLLVDSLRSVGKTKSHIEVLYIHSTKKF
Sbjct: 1  MLARRANVVACGLNEDKRPNRGRLEEGGCYARKLLVDSLRSVGKTKSHIEVLYIHSTKKF 60

Query: 61 KVLIGKELLA 71
          KVLIGKELLA
Sbjct: 61 KVLIGKELLA 70

The following BLAST results are available for this feature:
BLAST of Carg26160 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020581.14.0e-30100.00hypothetical protein SDJN02_17267, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg26160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26160 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg26160 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26160-RACarg26160-RAmRNA