Carg26086 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26086
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	LOB domain-containing protein
Location	Carg_Chr06: 5204724 .. 5205932 (-)
RNA-Seq Expression	Carg26086
Synteny	Carg26086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGCCTTCACATGGCTGATGCTGATCACCAATTCCCTCGCCGGAAAGACCTTGGCAAACGTACCTCCTCCGCTGCCAACACCGACACCACCTCCGCCACCCCTACCGACATCGGGGCTGCCACTGCTCCCTGTGGTGCCTGCAAGTTTCTCCGTAGAAAATGCGTCAATGGCTGCATCTTTGCACCGCATTTCGCCTCCGATCAGGGCGTTGCTCGCTTTGCCGCCGTGCATAAGGTGTTTGGAGCAAGTAATGTATCAAAGCTGCTGCTTCATATTCCGCTCAGTCGCCGAAACGACGCCGTCGTTACCATTTCTTATGAAGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTTCAACAACAGGTCTTCTTTTCATTTGATTTTTTAAACTAACAATATTTTATAATATATTATTTATTGATACATATTTTTCAAGAGAAATTATAGATAAGTTCGTAAATTTTGTTGTTGCTTCCTTACCAATAACGAAGATATTTACGCAAAATTTTAATAAAATTATAATCATGGAAAAAAAATATTTATAAATTATATTCTTGAATAAATTTTTATACTACTTTAAACACATTAATTTGGACAAATTTGAATTTTTCAAAAATATTTTCTGTTTTTGTAAATTATTAATCAAGCTTTGAGTATTATTTCTAAGAATTGTTTCGAAAAATATTTAGAAAAATTAAAATCGAAATATATTTATGAATTTCAGGTGGCATCTCTGCAGGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAGAACTCACAGCCACCGCAAGTGGGAGTGCAGCTGCAGCCCGCATACTCCAACAACTCCTCCATCTCTGTCTCAGCCTCCACCTCCGCTCATAATGCAATCAATTTGAGCAGTTTTGCTTCCAATTACGACCTTCCGACGGAGACTGCCCCATCTCCCCATCACTTAGAGCCTCTCCATCTCCCCCGCCGATCCATCGAAGACGAGGAAGACGAGGAAAATAGCCAGCTCCCCACCATCTTCGCCGACGACCTACTCCGCCCACGATGATCCAGTCCCTTCACCTTCATTTTCAATTCGTAAACCAACGCCTTGGGGAAGAATAACATTGAAGTCATTTTCCATCAGCTTTTCCTGCTAACATTGAGATAGAATCAATGT

mRNA sequence

ATTGCCTTCACATGGCTGATGCTGATCACCAATTCCCTCGCCGGAAAGACCTTGGCAAACGTACCTCCTCCGCTGCCAACACCGACACCACCTCCGCCACCCCTACCGACATCGGGGCTGCCACTGCTCCCTGTGGTGCCTGCAAGTTTCTCCGTAGAAAATGCGTCAATGGCTGCATCTTTGCACCGCATTTCGCCTCCGATCAGGGCGTTGCTCGCTTTGCCGCCGTGCATAAGGTGTTTGGAGCAAGTAATGTATCAAAGCTGCTGCTTCATATTCCGCTCAGTCGCCGAAACGACGCCGTCGTTACCATTTCTTATGAAGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTTCAACAACAGGTGGCATCTCTGCAGGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAGAACTCACAGCCACCGCAAGTGGGAGTGCAGCTGCAGCCCGCATACTCCAACAACTCCTCCATCTCTGTCTCAGCCTCCACCTCCGCTCATAATGCAATCAATTTGAGCAGTTTTGCTTCCAATTACGACCTTCCGACGGAGACTGCCCCATCTCCCCATCACTTAGAGCCTCTCCATCTCCCCCGCCGATCCATCGAAGACGAGGAAGACGAGGAAAATAGCCAGCTCCCCACCATCTTCGCCGACGACCTACTCCGCCCACGATGATCCAGTCCCTTCACCTTCATTTTCAATTCGTAAACCAACGCCTTGGGGAAGAATAACATTGAAGTCATTTTCCATCAGCTTTTCCTGCTAACATTGAGATAGAATCAATGT

Coding sequence (CDS)

ATGGCTGATGCTGATCACCAATTCCCTCGCCGGAAAGACCTTGGCAAACGTACCTCCTCCGCTGCCAACACCGACACCACCTCCGCCACCCCTACCGACATCGGGGCTGCCACTGCTCCCTGTGGTGCCTGCAAGTTTCTCCGTAGAAAATGCGTCAATGGCTGCATCTTTGCACCGCATTTCGCCTCCGATCAGGGCGTTGCTCGCTTTGCCGCCGTGCATAAGGTGTTTGGAGCAAGTAATGTATCAAAGCTGCTGCTTCATATTCCGCTCAGTCGCCGAAACGACGCCGTCGTTACCATTTCTTATGAAGCTCAGGCTAGACTCTCCGACCCTGTCTATGGCTGTGTCTCAACTGTACTTGCCCTTCAACAACAGGTGGCATCTCTGCAGGCGGAGCTTGCGGCGGTTCAAAGTCAATTAATAAGCAGCAGGTTGGCATTTGCAAGTGCAATTCAGAACTCACAGCCACCGCAAGTGGGAGTGCAGCTGCAGCCCGCATACTCCAACAACTCCTCCATCTCTGTCTCAGCCTCCACCTCCGCTCATAATGCAATCAATTTGAGCAGTTTTGCTTCCAATTACGACCTTCCGACGGAGACTGCCCCATCTCCCCATCACTTAGAGCCTCTCCATCTCCCCCGCCGATCCATCGAAGACGAGGAAGACGAGGAAAATAGCCAGCTCCCCACCATCTTCGCCGACGACCTACTCCGCCCACGATGA

Protein sequence

MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSASTSAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRPR

Homology

[Close]

BLAST of Carg26086 vs. NCBI nr
Match: KAG6596968.1 (LOB domain-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028443.1 LOB domain-containing protein 20 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 457.2 bits (1175), Expect = 8.7e-125
Identity = 241/241 (100.00%), Postives = 241/241 (100.00%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH
Sbjct: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST
Sbjct: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240
           SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP
Sbjct: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240

Query: 241 R 242
           R
Sbjct: 241 R 241

[Close]

BLAST of Carg26086 vs. NCBI nr
Match: XP_022945292.1 (LOB domain-containing protein 20 [Cucurbita moschata])

HSP 1 Score: 454.5 bits (1168), Expect = 5.6e-124
Identity = 239/241 (99.17%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADADHQFPRRKDLGKRTSSAANTDTTS+TPTDIGAATAPCGACKFLRRKCVNGCIFAPH
Sbjct: 1   MADADHQFPRRKDLGKRTSSAANTDTTSSTPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           L LQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST
Sbjct: 121 LTLQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240
           SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP
Sbjct: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240

Query: 241 R 242
           R
Sbjct: 241 R 241

[Close]

BLAST of Carg26086 vs. NCBI nr
Match: XP_023539451.1 (LOB domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.8 bits (1166), Expect = 9.6e-124
Identity = 239/241 (99.17%), Postives = 239/241 (99.17%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADADHQFPRRKDLGKRTSSAANTDTTS TPTDIGAATAPCGACKFLRRKCVNGCIFAPH
Sbjct: 1   MADADHQFPRRKDLGKRTSSAANTDTTSTTPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST
Sbjct: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240
           SAHNAINLSSFASNYDLP ETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP
Sbjct: 181 SAHNAINLSSFASNYDLPAETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240

Query: 241 R 242
           R
Sbjct: 241 R 241

[Close]

BLAST of Carg26086 vs. NCBI nr
Match: XP_023521381.1 (LOB domain-containing protein 20-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 453.0 bits (1164), Expect = 1.6e-123
Identity = 238/241 (98.76%), Postives = 239/241 (99.17%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADADHQFPRRKDLGKRTSSAANTDTTS TPTDIGAATAPCGACKFLRRKCVNGCIFAPH
Sbjct: 1   MADADHQFPRRKDLGKRTSSAANTDTTSTTPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQ+QPAYSNNSSISVSAST
Sbjct: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQMQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240
           SAHNAINLSSFASNYDLP ETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP
Sbjct: 181 SAHNAINLSSFASNYDLPAETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240

Query: 241 R 242
           R
Sbjct: 241 R 241

[Close]

BLAST of Carg26086 vs. NCBI nr
Match: XP_022973353.1 (LOB domain-containing protein 20-like [Cucurbita maxima] >XP_022975179.1 LOB domain-containing protein 20-like [Cucurbita maxima])

HSP 1 Score: 451.1 bits (1159), Expect = 6.2e-123
Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADADHQFPRRKDLGKRTSS  NTDT+SATPTDIGA TAPCGACKFLRRKCVNGCIFAPH
Sbjct: 1   MADADHQFPRRKDLGKRTSSTTNTDTSSATPTDIGATTAPCGACKFLRRKCVNGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST
Sbjct: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240
           SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP
Sbjct: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240

Query: 241 R 242
           R
Sbjct: 241 R 241

[Close]

BLAST of Carg26086 vs. ExPASy Swiss-Prot
Match: Q9SRV3 (LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 2.5e-58
Identity = 141/234 (60.26%), Postives = 168/234 (71.79%), Query Frame = 0


Query: 10  RRKDL-GKRTSSAANTDTTSATPTDIGAAT------APCGACKFLRRKCVNGCIFAPHFA 69
           RRK L GKRTS    T + S+    + AAT      +PCGACKFLRRKCV+GCIFAPHF 
Sbjct: 14  RRKSLAGKRTSQQTPTSSLSSGGVSMAAATTGTGTASPCGACKFLRRKCVSGCIFAPHFG 73

Query: 70  SDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLA 129
           SDQG ARFAAVHKVFGASNVSKLL HIP++RR+DAVVTISYEAQARLSDPVYGCVST+LA
Sbjct: 74  SDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILA 133

Query: 130 LQQQVASLQAELAAVQSQLISSRLAFASAIQ-----NSQPPQVGVQLQPAYSNNSSISVS 189
           LQQQVASLQAEL+ VQSQLI+SR+A A+ +Q       Q  Q+ V  QP YSNNSS S +
Sbjct: 134 LQQQVASLQAELSVVQSQLINSRVAMANVMQQQTHHQQQQQQLVVMQQPEYSNNSSASTT 193

Query: 190 ASTSAHNAINLSSFAS--NYDLPTETAPSPHHLEPL--HLPRRSIEDEEDEENS 228
            + +A N+  +++ A+  +YD+   T    H L+P+  H  RR     EDEE S
Sbjct: 194 LAGAAMNSFTMTADAAAVSYDVMAPT-NLEHSLQPMPPHQQRRGDYQHEDEEES 246

[Close]

BLAST of Carg26086 vs. ExPASy Swiss-Prot
Match: O22131 (LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 SV=2)

HSP 1 Score: 160.2 bits (404), Expect = 2.9e-38
Identity = 86/134 (64.18%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 35  GAATAPCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRR 94
           G    PCGACKFLRRKCV GCIFAP+F S+QG A FAAVHKVFGASNVSKLLLHIP+ RR
Sbjct: 32  GGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRR 91

Query: 95  NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQN 154
           +DAVVTI YEAQAR+ DP+YGCV+ + ALQQQV +LQAE++ +Q+ L S  L      Q 
Sbjct: 92  SDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELP-----QP 151

Query: 155 SQPPQVGVQLQPAY 169
              PQ   Q QP +
Sbjct: 152 QTRPQPMPQPQPLF 160

[Close]

BLAST of Carg26086 vs. ExPASy Swiss-Prot
Match: Q9SLB7 (LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 6.0e-36
Identity = 74/117 (63.25%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 39  APCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAV 98
           +PCGACKFLRRKC + CIFAP+F+S+QG ARFAA+HKVFGASNVSKLLL++P+  R +AV
Sbjct: 14  SPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAV 73

Query: 99  VTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQNS 156
           VTI+YEAQARL DPVYGCVS + ALQQQVA LQ+++  +++Q+   + + A  +++S
Sbjct: 74  VTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSAAGDLRHS 130

[Close]

BLAST of Carg26086 vs. ExPASy Swiss-Prot
Match: O81323 (LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.0e-35
Identity = 95/191 (49.74%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 19  SSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFG 78
           SS+ N  ++S      G    PCGACKFLRRKCV GCIFAP+F S+QG A FAAVHKVFG
Sbjct: 2   SSSGNPSSSS------GGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFG 61

Query: 79  ASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQ 138
           ASNVSKLL H+P  +R DAVV+I +EAQARL DP+YGCVS +++LQQQV SLQ EL+ +Q
Sbjct: 62  ASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQ 121

Query: 139 SQLISSRLAFASAIQNSQPPQVGVQLQ---PAYSNNSSISVSASTSAHNAINLSSFASNY 198
           + L +  L         QPPQV V       A S     ++S S    ++I     +S +
Sbjct: 122 AHLATLEL------PQPQPPQVPVSSSGSLQALSITDLPTISPSVYDLSSIFEPVMSSTW 180

Query: 199 DLPTETAPSPH 207
            +  +  PS H
Sbjct: 182 AMQQQPRPSDH 180

[Close]

BLAST of Carg26086 vs. ExPASy Swiss-Prot
Match: Q9M2J7 (LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.0e-35
Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 39  APCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAV 98
           +PCGACKFLRRKC  GC+FAP+F  +QG + FAA+HKVFGASN SKLL H+P+S R +A 
Sbjct: 10  SPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAA 69

Query: 99  VTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQP 158
           +TISYEAQARL DP+YGCVS + ALQQQV +LQAEL  ++ Q   S + FA +  +  P
Sbjct: 70  ITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQS-MIFADSPTSENP 127

[Close]

BLAST of Carg26086 vs. ExPASy TrEMBL
Match: A0A6J1G0I5 (LOB domain-containing protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449577 PE=3 SV=1)

HSP 1 Score: 454.5 bits (1168), Expect = 2.7e-124
Identity = 239/241 (99.17%), Postives = 240/241 (99.59%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADADHQFPRRKDLGKRTSSAANTDTTS+TPTDIGAATAPCGACKFLRRKCVNGCIFAPH
Sbjct: 1   MADADHQFPRRKDLGKRTSSAANTDTTSSTPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           L LQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST
Sbjct: 121 LTLQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240
           SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP
Sbjct: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240

Query: 241 R 242
           R
Sbjct: 241 R 241

[Close]

BLAST of Carg26086 vs. ExPASy TrEMBL
Match: A0A6J1IJP1 (LOB domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC111474219 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.0e-123
Identity = 237/241 (98.34%), Postives = 238/241 (98.76%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADADHQFPRRKDLGKRTSS  NTDT+SATPTDIGA TAPCGACKFLRRKCVNGCIFAPH
Sbjct: 1   MADADHQFPRRKDLGKRTSSTTNTDTSSATPTDIGATTAPCGACKFLRRKCVNGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST
Sbjct: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240
           SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP
Sbjct: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFADDLLRP 240

Query: 241 R 242
           R
Sbjct: 241 R 241

[Close]

BLAST of Carg26086 vs. ExPASy TrEMBL
Match: A0A5D3DPT9 (LOB domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007110 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.7e-94
Identity = 197/235 (83.83%), Postives = 206/235 (87.66%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADAD Q PRRK LG +    AN D  SAT       TAPCGACKFLRRKC+NGCIFAPH
Sbjct: 1   MADAD-QLPRRKPLGNK---RANRDPDSAT------VTAPCGACKFLRRKCINGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQG ARFAAVHKVFGASNVSKLLLHIP+SRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           LALQQQVASLQAELAAVQ+Q+ISSRLAFA+A+QNS P QVGV LQPAYSNNSSISVSAST
Sbjct: 121 LALQQQVASLQAELAAVQAQVISSRLAFAAAVQNSHPSQVGV-LQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFAD 236
           S HNAINLSSFASNYDLPTETAPS HHLEP H P R I++EEDEENSQLP IFAD
Sbjct: 181 STHNAINLSSFASNYDLPTETAPSSHHLEPPHFPHRPIDEEEDEENSQLPAIFAD 224

[Close]

BLAST of Carg26086 vs. ExPASy TrEMBL
Match: A0A1S3B8H2 (LOB domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103486927 PE=3 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.7e-94
Identity = 197/235 (83.83%), Postives = 206/235 (87.66%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADAD Q PRRK LG +    AN D  SAT       TAPCGACKFLRRKC+NGCIFAPH
Sbjct: 1   MADAD-QLPRRKPLGNK---RANRDPDSAT------VTAPCGACKFLRRKCINGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQG ARFAAVHKVFGASNVSKLLLHIP+SRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGAARFAAVHKVFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           LALQQQVASLQAELAAVQ+Q+ISSRLAFA+A+QNS P QVGV LQPAYSNNSSISVSAST
Sbjct: 121 LALQQQVASLQAELAAVQAQVISSRLAFAAAVQNSHPSQVGV-LQPAYSNNSSISVSAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFAD 236
           S HNAINLSSFASNYDLPTETAPS HHLEP H P R I++EEDEENSQLP IFAD
Sbjct: 181 STHNAINLSSFASNYDLPTETAPSSHHLEPPHFPHRPIDEEEDEENSQLPAIFAD 224

[Close]

BLAST of Carg26086 vs. ExPASy TrEMBL
Match: A0A0A0LCJ9 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G822390 PE=3 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 2.7e-92
Identity = 197/235 (83.83%), Postives = 205/235 (87.23%), Query Frame = 0


Query: 1   MADADHQFPRRKDLGKRTSSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPH 60
           MADAD Q PRRK LG +    AN D  SAT       TAPCGACKFLRRKCVNGCIFAPH
Sbjct: 1   MADAD-QLPRRKPLGNK---RANRDPDSAT------VTAPCGACKFLRRKCVNGCIFAPH 60

Query: 61  FASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTV 120
           FASDQG ARFAAVHK+FGASNVSKLLLHIP+SRRNDAVVTISYEAQARLSDPVYGCVSTV
Sbjct: 61  FASDQGAARFAAVHKIFGASNVSKLLLHIPVSRRNDAVVTISYEAQARLSDPVYGCVSTV 120

Query: 121 LALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQPPQVGVQLQPAYSNNSSISVSAST 180
           LALQQQVASLQAELAAVQ+QLISSRLAFA+A+QNSQ  QVGV LQPAYSNNSSI  SAST
Sbjct: 121 LALQQQVASLQAELAAVQAQLISSRLAFAAAVQNSQSSQVGV-LQPAYSNNSSI--SAST 180

Query: 181 SAHNAINLSSFASNYDLPTETAPSPHHLEPLHLPRRSIEDEEDEENSQLPTIFAD 236
           SA NAINLSSFASNYDLPTETAPS HHLEPLH P R I++EEDEENSQLP IFAD
Sbjct: 181 SAPNAINLSSFASNYDLPTETAPSSHHLEPLHFPHRPIDEEEDEENSQLPAIFAD 222

[Close]

BLAST of Carg26086 vs. TAIR 10
Match: AT3G03760.1 (LOB domain-containing protein 20 )

HSP 1 Score: 226.9 bits (577), Expect = 1.8e-59
Identity = 141/234 (60.26%), Postives = 168/234 (71.79%), Query Frame = 0


Query: 10  RRKDL-GKRTSSAANTDTTSATPTDIGAAT------APCGACKFLRRKCVNGCIFAPHFA 69
           RRK L GKRTS    T + S+    + AAT      +PCGACKFLRRKCV+GCIFAPHF 
Sbjct: 14  RRKSLAGKRTSQQTPTSSLSSGGVSMAAATTGTGTASPCGACKFLRRKCVSGCIFAPHFG 73

Query: 70  SDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLA 129
           SDQG ARFAAVHKVFGASNVSKLL HIP++RR+DAVVTISYEAQARLSDPVYGCVST+LA
Sbjct: 74  SDQGAARFAAVHKVFGASNVSKLLHHIPVNRRHDAVVTISYEAQARLSDPVYGCVSTILA 133

Query: 130 LQQQVASLQAELAAVQSQLISSRLAFASAIQ-----NSQPPQVGVQLQPAYSNNSSISVS 189
           LQQQVASLQAEL+ VQSQLI+SR+A A+ +Q       Q  Q+ V  QP YSNNSS S +
Sbjct: 134 LQQQVASLQAELSVVQSQLINSRVAMANVMQQQTHHQQQQQQLVVMQQPEYSNNSSASTT 193

Query: 190 ASTSAHNAINLSSFAS--NYDLPTETAPSPHHLEPL--HLPRRSIEDEEDEENS 228
            + +A N+  +++ A+  +YD+   T    H L+P+  H  RR     EDEE S
Sbjct: 194 LAGAAMNSFTMTADAAAVSYDVMAPT-NLEHSLQPMPPHQQRRGDYQHEDEEES 246

[Close]

BLAST of Carg26086 vs. TAIR 10
Match: AT2G45420.1 (LOB domain-containing protein 18 )

HSP 1 Score: 160.2 bits (404), Expect = 2.0e-39
Identity = 86/134 (64.18%), Postives = 100/134 (74.63%), Query Frame = 0


Query: 35  GAATAPCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRR 94
           G    PCGACKFLRRKCV GCIFAP+F S+QG A FAAVHKVFGASNVSKLLLHIP+ RR
Sbjct: 32  GGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGSAYFAAVHKVFGASNVSKLLLHIPVHRR 91

Query: 95  NDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQN 154
           +DAVVTI YEAQAR+ DP+YGCV+ + ALQQQV +LQAE++ +Q+ L S  L      Q 
Sbjct: 92  SDAVVTICYEAQARIRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLASLELP-----QP 151

Query: 155 SQPPQVGVQLQPAY 169
              PQ   Q QP +
Sbjct: 152 QTRPQPMPQPQPLF 160

[Close]

BLAST of Carg26086 vs. TAIR 10
Match: AT2G42430.1 (lateral organ boundaries-domain 16 )

HSP 1 Score: 152.5 bits (384), Expect = 4.2e-37
Identity = 74/117 (63.25%), Postives = 98/117 (83.76%), Query Frame = 0


Query: 39  APCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAV 98
           +PCGACKFLRRKC + CIFAP+F+S+QG ARFAA+HKVFGASNVSKLLL++P+  R +AV
Sbjct: 14  SPCGACKFLRRKCASDCIFAPYFSSEQGAARFAAIHKVFGASNVSKLLLNVPIHDRCEAV 73

Query: 99  VTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQNS 156
           VTI+YEAQARL DPVYGCVS + ALQQQVA LQ+++  +++Q+   + + A  +++S
Sbjct: 74  VTIAYEAQARLHDPVYGCVSHIFALQQQVAFLQSQVMQMKAQIAGHQTSAAGDLRHS 130

[Close]

BLAST of Carg26086 vs. TAIR 10
Match: AT4G00220.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 151.8 bits (382), Expect = 7.2e-37
Identity = 95/191 (49.74%), Postives = 120/191 (62.83%), Query Frame = 0


Query: 19  SSAANTDTTSATPTDIGAATAPCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFG 78
           SS+ N  ++S      G    PCGACKFLRRKCV GCIFAP+F S+QG A FAAVHKVFG
Sbjct: 2   SSSGNPSSSS------GGGGGPCGACKFLRRKCVAGCIFAPYFDSEQGAAHFAAVHKVFG 61

Query: 79  ASNVSKLLLHIPLSRRNDAVVTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQ 138
           ASNVSKLL H+P  +R DAVV+I +EAQARL DP+YGCVS +++LQQQV SLQ EL+ +Q
Sbjct: 62  ASNVSKLLHHVPEHKRPDAVVSICFEAQARLRDPIYGCVSHIVSLQQQVVSLQTELSYLQ 121

Query: 139 SQLISSRLAFASAIQNSQPPQVGVQLQ---PAYSNNSSISVSASTSAHNAINLSSFASNY 198
           + L +  L         QPPQV V       A S     ++S S    ++I     +S +
Sbjct: 122 AHLATLEL------PQPQPPQVPVSSSGSLQALSITDLPTISPSVYDLSSIFEPVMSSTW 180

Query: 199 DLPTETAPSPH 207
            +  +  PS H
Sbjct: 182 AMQQQPRPSDH 180

[Close]

BLAST of Carg26086 vs. TAIR 10
Match: AT3G58190.1 (lateral organ boundaries-domain 29 )

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-36
Identity = 73/119 (61.34%), Postives = 91/119 (76.47%), Query Frame = 0


Query: 39  APCGACKFLRRKCVNGCIFAPHFASDQGVARFAAVHKVFGASNVSKLLLHIPLSRRNDAV 98
           +PCGACKFLRRKC  GC+FAP+F  +QG + FAA+HKVFGASN SKLL H+P+S R +A 
Sbjct: 10  SPCGACKFLRRKCAKGCVFAPYFCHEQGASHFAAIHKVFGASNASKLLSHLPISDRCEAA 69

Query: 99  VTISYEAQARLSDPVYGCVSTVLALQQQVASLQAELAAVQSQLISSRLAFASAIQNSQP 158
           +TISYEAQARL DP+YGCVS + ALQQQV +LQAEL  ++ Q   S + FA +  +  P
Sbjct: 70  ITISYEAQARLQDPIYGCVSHIFALQQQVVNLQAELEILKQQAAQS-MIFADSPTSENP 127

The following BLAST results are available for this feature:

BLAST of Carg26086 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596968.1	8.7e-125	100.00	LOB domain-containing protein 20, partial [Cucurbita argyrosperma subsp. sororia...	[more]
XP_022945292.1	5.6e-124	99.17	LOB domain-containing protein 20 [Cucurbita moschata]	[more]
XP_023539451.1	9.6e-124	99.17	LOB domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_023521381.1	1.6e-123	98.76	LOB domain-containing protein 20-like [Cucurbita pepo subsp. pepo]	[more]
XP_022973353.1	6.2e-123	98.34	LOB domain-containing protein 20-like [Cucurbita maxima] >XP_022975179.1 LOB dom...	[more]

BLAST of Carg26086 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRV3	2.5e-58	60.26	LOB domain-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=LBD20 PE=2 S...	[more]
O22131	2.9e-38	64.18	LOB domain-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=LBD18 PE=1 S...	[more]
Q9SLB7	6.0e-36	63.25	LOB domain-containing protein 16 OS=Arabidopsis thaliana OX=3702 GN=LBD16 PE=1 S...	[more]
O81323	1.0e-35	49.74	LOB domain-containing protein 30 OS=Arabidopsis thaliana OX=3702 GN=LBD30 PE=1 S...	[more]
Q9M2J7	3.0e-35	61.34	LOB domain-containing protein 29 OS=Arabidopsis thaliana OX=3702 GN=LBD29 PE=2 S...	[more]

BLAST of Carg26086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G0I5	2.7e-124	99.17	LOB domain-containing protein 20 OS=Cucurbita moschata OX=3662 GN=LOC111449577 P...	[more]
A0A6J1IJP1	3.0e-123	98.34	LOB domain-containing protein 20-like OS=Cucurbita maxima OX=3661 GN=LOC11147421...	[more]
A0A5D3DPT9	1.7e-94	83.83	LOB domain-containing protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3B8H2	1.7e-94	83.83	LOB domain-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103486927 PE=3 SV...	[more]
A0A0A0LCJ9	2.7e-92	83.83	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G822390 PE=3 SV...	[more]

BLAST of Carg26086 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03760.1	1.8e-59	60.26	LOB domain-containing protein 20	[more]
AT2G45420.1	2.0e-39	64.18	LOB domain-containing protein 18	[more]
AT2G42430.1	4.2e-37	63.25	lateral organ boundaries-domain 16	[more]
AT4G00220.1	7.2e-37	49.74	Lateral organ boundaries (LOB) domain family protein	[more]
AT3G58190.1	2.1e-36	61.34	lateral organ boundaries-domain 29	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 120..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..241
None	No IPR available	PANTHER	PTHR31529	LOB DOMAIN CONTAINING PROTEIN	coord: 18..231
None	No IPR available	PANTHER	PTHR31529:SF12	LOB DOMAIN-CONTAINING PROTEIN 20	coord: 18..231
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 40..138 e-value: 6.4E-37 score: 126.1
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 39..141 score: 23.130766

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26086-RA	Carg26086-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:1900150	regulation of defense response to fungus
cellular_component	GO:0005634	nucleus