Carg26075 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26075
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Cytochrome c
Location	Carg_Chr06: 4983795 .. 4987304 (-)
RNA-Seq Expression	Carg26075
Synteny	Carg26075

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCGTATGGAGACCACGGAGAAAACATTGCGAGCCCTAAGCCCTCAGAATCTGAACAACATCTCATTCCATACGCCATGGCCAAGCTTTGACGAAGGCCCCTCCGGCAATTCCAAAGCTGGTGAAGAAAGATTTTCAAGACCAAATGCGCTCAGTGCCACACTGTTCGACAAGGTGCGCTGGTCACAAGCAAGGTTAGAGATTATCATTTCTTATTTATAGTTTGGGTTTCTTGCGATTCGAGATCGGAGGTTAGAGATCTCGAAGTCTCTATTAGTATTCTGAACATGTTCGTCCATCTTTGAGGATTCAGATGCTGAGTTTTGCCTACGGTTGAATCGATCTGATCGTTTTTCTCTGTTTTCCCCCCAATATACTCTAGGAAACTAATACCTAGTATTGGCCTTCCATCCAATTTTTTCCATCGCCTACCAGGAACATGATATTTATTATTATTATATTATTATTTTTTTTTATGGAAATTTGACTTGGTGAAATGATTTTGGAAATACTTGGAAGCGTTTACTTTCATGAAACTAATAACAAATATATGGATTTTTTTTTTATAAAAAAAATCATTTAATACAGTAATTTTTTAATAACTCACTAATTATTCATTAACTTGGTAATGATAAATTAGTACGTTTTTTTTTTTTTTTTTTTTTATGGCGTTGGCCTTGGTGAGTAGAAATCATGATTAAGGTGAACAATCGATTTTAGTCAATAGTATATGGCTTCTTACTTTTTATTTTTGCTATTAGTTTTTTAGCTCCAGTTTTTGTGCTATTTTACGGAAGTTGTGTTAGATTTGCAGTTACTTTTATTCTGTTTCAATTGGGTTTCATTAGGTTTTGAGTTGTGGATGTACGAAGCTTATTGTTGCGTAATGTTTTGACTTTTTTATTTTTTATTTTGAGTAGATTTTCATCCCTCCCTTTCGCTTTTTCACGAGGAGAAATCAGCTTTTCTATATTCATATGTAAGTAGACTCTAAGACAAGCAATGGCACTTGGAATCTTGCAGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGACTACTTGCTTAACCCCAAGAAGGTAACTCCCGTCTATTTCTCAACACTTGTGGCCTTGTAGTATTTGATTTGAAGCTAGTTTATTTCCCTGCGTTGTCCTCCAGATGTTCTAATTGTTGATTCATTGATATTACTGTGAATTCACCTAAATAGGCTTGCCGTGTTCCTTACTAGCCTTTTTCTTCATAATGCCTCTTCAACTGATCCCCAAGTGCTGAAATGTTTTTTGCAACTTTGATCAACATGTTCGTCTTTTTCCATCTTACAAGTAGCCTGAACTATAAAAATATGTACATTCCTTTTCTACAATAATAGCCAAAAGTTTTGAAGAATGGTCAACCACCATTTGCGTCACCAATCTCCCTTCACTTGGAGTTTCAATCATAATTTAAGCAAAAATAAAACATACAAAAATTGCCTCTTATATCTGAATATGCTTCAGACAAGCACGTTAATAGTTTCTTGAAACAGGATTGATTTCCACAATTTCCCTCGATTCCTTTACAAGTCTCCTTTGGGAAAATCACTTGCCCTTAAATCTATCTTTTGTGACATGATTAACTTTTTTGGCATCGATGCTATTAGGAACACTCTGGTCCCAATGTATCGTCGTGGTAAATCCATTTAGGCATTAGTTATGTGTCTTCCCTTGCTCTCTTCGCTTCTTCTTGCAGCTTAACAAAGTTCGTCCTGAACCCTTGCTTAGGGATTCCTCTCAATTGAAATCTTCATTTGCCCTCAAGTTTCAATGACATAATTAACAAAGGAAGTTTGGAAAATCCCAGTCTATTCTTCTCAGTTTGGCTATAAAATGAAAAATTCAAAATTTCCAAAGCAAGTGAAATTCTCTATGGGAACTTTTGAGTTGAAGTGTTAACATTCACTCAAATCCTTTGATAATGTCCCTTATGATCTCACTGTGTCTATGAACACCCTCATTTTCAGCACTTAAAACCGTTTTCTTTATTCCTTGATGGTCATCTTTCTAATAGTGATGGCTTTATGGCCACAATGTTTGATGGTTTATTTTTTGCCTATTTGTTGGCTTGAAAGGAAAGGAACAAATCTTCTGGTTATGGCGAATAAAATCCCATGTTATACTTGCTGTTTTATCATTGAACCATGTTTGTTAGGTTATGATTCTTAAGTTTGGATATGTTAAAGCTTGCGTTGGGAGTTTATTTTAAGAAACAGGGGTCAGTATACTATTTGAATTGTGCTGATAAATGGGGTTTAGTTTGTGTAACCTATGTTCATCTTTTTTGTTTTGGTTTGGGATTTATAAGAAATTTAAATAGTTTACATGTTTACCATTTTTTGTATAGAAAATTCATTTCTACATTAAATTTGGTAAAATTATCATAATATTTTTCTTTTGTAATCAGCCAGTACAGTAAGTAGTTTACTACCGTTGTCAACCGTGTAATCTTTTTGAATAATTATTTTGTAATGTGAATATTCAACTACTTTTGTAATTGCTTCTCAAATATTCACACCAAGGTGCGATGAAGTGTGCATAAATTCTTTCGAACAGACCAAGCTTTCTGAACCATTGTTATCTTTGTAGTTCTTTCTTGATGTTAATTTTGTGTTTCATCCCTTATGAAATTGTCTTACCTTTCTGGAAAAACTTTTGGGAACATCACCATTTTTCAAACTTCAGGAAGGAAACCTCCAAATTTGCCCATCCAACTAATTTACAAACCCTCCAATCATCTTCTTTTTTGAAAATGCATCCTCTTTGTGTGGAATCTGCATTAACTCTAGCGCTTATGATTGCTATGGTTTATAGAGGAATGTGAAGGTAATTGTAAATTTGGAGGGATGAAAAGAATACTGAGCTTGGTTTATGAATTTTGTTTGTCCTTCTTTGATCAATGATCACTTGTGTCTCTTTCAAAGTTTTAGGAGATGGTAAATATTCTAACAAATAGTTGGGGGATGTGTGTATCCATTGTACAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAATTGCATAATATATGGTTGATGCTTCTTCCAATCTACAATTTTTTGCTATCAGTTTTCCCCATCATCGTTAAAATAAGAACATTGAGAGGAGAGGAACCTTAGATGAAAAGTTGGAGGTGGTCACACACACAGACTTTTTTTTTTTTCTTTTTCATTAAAAAATTCTTACTTCCCTTCCTTCGCTACACTCATTTGCAGAGTTCACCCCATTTGTAGCTTACATTATTGTTATGTGAACATAACTGCTACAATTTTTTTGGCCAACCCGGTTCTGCCAACTTATTTTCTCATAATAAATGTCACGCTTGTTAGAGACT

mRNA sequence

ATGCAGCGTATGGAGACCACGGAGAAAACATTGCGAGCCCTAAGCCCTCAGAATCTGAACAACATCTCATTCCATACGCCATGGCCAAGCTTTGACGAAGGCCCCTCCGGCAATTCCAAAGCTGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGACTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAATTGCATAATATATGGTTGATGCTTCTTCCAATCTACAATTTTTTGCTATCAGTTTTCCCCATCATCGTTAAAATAAGAACATTGAGAGGAGAGGAACCTTAGATGAAAAGTTGGAGGTGGTCACACACACAGACTTTTTTTTTTTTCTTTTTCATTAAAAAATTCTTACTTCCCTTCCTTCGCTACACTCATTTGCAGAGTTCACCCCATTTGTAGCTTACATTATTGTTATGTGAACATAACTGCTACAATTTTTTTGGCCAACCCGGTTCTGCCAACTTATTTTCTCATAATAAATGTCACGCTTGTTAGAGACT

Coding sequence (CDS)

ATGCAGCGTATGGAGACCACGGAGAAAACATTGCGAGCCCTAAGCCCTCAGAATCTGAACAACATCTCATTCCATACGCCATGGCCAAGCTTTGACGAAGGCCCCTCCGGCAATTCCAAAGCTGGTCCCAATTTGAATGGGCTATTTGGACGGCAATCTGGCACAACTGCTGGATACTCTTATTCTGCTGCCAACAAGAATATGGCCGTGATATGGGAAGAAAAGACCTTGTATGACTACTTGCTTAACCCCAAGAAGTATATTCCTGGAACAAAGATGGTTTTCCCAGGGCTGAAGAAACCGCAGGATCGTGCCGACCTTATTGCTTATCTGAAGGAAGCAACTGCTTAA

Protein sequence

MQRMETTEKTLRALSPQNLNNISFHTPWPSFDEGPSGNSKAGPNLNGLFGRQSGTTAGYSYSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA

Homology

[Close]

BLAST of Carg26075 vs. NCBI nr
Match: KAG7028432.1 (hypothetical protein SDJN02_09613, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 239.6 bits (610), Expect = 1.4e-59
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MQRMETTEKTLRALSPQNLNNISFHTPWPSFDEGPSGNSKAGPNLNGLFGRQSGTTAGYS 60
           MQRMETTEKTLRALSPQNLNNISFHTPWPSFDEGPSGNSKAGPNLNGLFGRQSGTTAGYS
Sbjct: 1   MQRMETTEKTLRALSPQNLNNISFHTPWPSFDEGPSGNSKAGPNLNGLFGRQSGTTAGYS 60

Query: 61  YSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           YSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 61  YSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 116

[Close]

BLAST of Carg26075 vs. NCBI nr
Match: XP_022932892.1 (cytochrome c [Cucurbita moschata] >XP_023520614.1 cytochrome c [Cucurbita pepo subsp. pepo] >KAG6596958.1 hypothetical protein SDJN03_10138, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.6e-36
Identity = 85/110 (77.27%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGRQSGTTAGYSYSAANK
Sbjct: 3   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 63  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Carg26075 vs. NCBI nr
Match: XP_022973349.1 (cytochrome c-like [Cucurbita maxima])

HSP 1 Score: 161.4 bits (407), Expect = 4.7e-36
Identity = 84/110 (76.36%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGR+SGTTAGYSYSAANK
Sbjct: 3   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRKSGTTAGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 63  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Carg26075 vs. NCBI nr
Match: XP_038893188.1 (cytochrome c [Benincasa hispida])

HSP 1 Score: 160.6 bits (405), Expect = 8.1e-36
Identity = 87/130 (66.92%), Postives = 94/130 (72.31%), Query Frame = 0


Query: 10  TLRALSPQNLNNISFHTPWPSFDEGPSGNSKA-----------------------GPNLN 69
           TLR L+ ++  ++   T   SFDE P GNSKA                       GPNLN
Sbjct: 9   TLRTLALRSERHL-IPTAMASFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLN 68

Query: 70  GLFGRQSGTTAGYSYSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRAD 117
           GLFGRQSGTT GYSYSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQ+RAD
Sbjct: 69  GLFGRQSGTTPGYSYSAANKNMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQERAD 128

[Close]

BLAST of Carg26075 vs. NCBI nr
Match: XP_022930036.1 (cytochrome c [Cucurbita moschata] >XP_022994612.1 cytochrome c [Cucurbita maxima] >XP_023530772.1 cytochrome c [Cucurbita pepo subsp. pepo] >KAG6601704.1 hypothetical protein SDJN03_06937, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032456.1 hypothetical protein SDJN02_06504 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 159.8 bits (403), Expect = 1.4e-35
Identity = 83/110 (75.45%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGRQSGTT GYSYSAANK
Sbjct: 3   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 63  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Carg26075 vs. ExPASy Swiss-Prot
Match: P00052 (Cytochrome c OS=Vigna radiata var. radiata OX=3916 PE=1 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 3.1e-38
Identity = 82/110 (74.55%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSK+                       GPNLNGLFGRQSGTTAGYSYS ANK
Sbjct: 2   SFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTANK 61

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 62  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 111

[Close]

BLAST of Carg26075 vs. ExPASy Swiss-Prot
Match: P00051 (Cytochrome c OS=Cucurbita maxima OX=3661 PE=1 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.0e-38
Identity = 83/110 (75.45%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGRQSGTT GYSYSAANK
Sbjct: 2   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK 61

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           N AVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 62  NRAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Carg26075 vs. ExPASy Swiss-Prot
Match: P62772 (Cytochrome c OS=Brassica napus OX=3708 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-38
Identity = 83/110 (75.45%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGRQSGTTAGYSYSAANK
Sbjct: 2   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANK 61

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           N AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 62  NKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Carg26075 vs. ExPASy Swiss-Prot
Match: P62773 (Cytochrome c OS=Brassica oleracea OX=3712 PE=1 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 6.9e-38
Identity = 83/110 (75.45%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGRQSGTTAGYSYSAANK
Sbjct: 2   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANK 61

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           N AV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 62  NKAVEWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 111

[Close]

BLAST of Carg26075 vs. ExPASy Swiss-Prot
Match: P00053 (Cytochrome c OS=Cannabis sativa OX=3483 PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.6e-37
Identity = 76/110 (69.09%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SF++ P G+SKA                       GPNLNGLFGRQSGTTAGYSYSAANK
Sbjct: 2   SFBZAPPGBSKAGEKIFKTKCAECHTVGRGAGHKQGPNLNGLFGRQSGTTAGYSYSAANK 61

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAV W++KTLYDYLLNPKKYIPGTKMVFPGLKKP++RADLIAYLKE+TA
Sbjct: 62  NMAVTWZZKTLYDYLLNPKKYIPGTKMVFPGLKKPZBRADLIAYLKESTA 111

[Close]

BLAST of Carg26075 vs. ExPASy TrEMBL
Match: A0A6J1EY20 (cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111439394 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.9e-37
Identity = 85/110 (77.27%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGRQSGTTAGYSYSAANK
Sbjct: 3   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 63  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Carg26075 vs. ExPASy TrEMBL
Match: A0A6J1IEB6 (cytochrome c-like OS=Cucurbita maxima OX=3661 GN=LOC111471907 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.3e-36
Identity = 84/110 (76.36%), Postives = 85/110 (77.27%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGR+SGTTAGYSYSAANK
Sbjct: 3   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRKSGTTAGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA
Sbjct: 63  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 112

[Close]

BLAST of Carg26075 vs. ExPASy TrEMBL
Match: A0A6J1JWC5 (cytochrome c OS=Cucurbita maxima OX=3661 GN=LOC111490272 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.7e-36
Identity = 83/110 (75.45%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGRQSGTT GYSYSAANK
Sbjct: 3   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 63  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Carg26075 vs. ExPASy TrEMBL
Match: A0A6J1EPS9 (cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111436470 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.7e-36
Identity = 83/110 (75.45%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSKA                       GPNLNGLFGRQSGTT GYSYSAANK
Sbjct: 3   SFDEAPPGNSKAGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 63  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Carg26075 vs. ExPASy TrEMBL
Match: A0A1S3TS68 (cytochrome c OS=Vigna radiata var. radiata OX=3916 GN=LOC106758147 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 82/110 (74.55%), Postives = 84/110 (76.36%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GNSK+                       GPNLNGLFGRQSGTTAGYSYS ANK
Sbjct: 3   SFDEAPPGNSKSGEKIFKTKCAQCHTVDKGAGHKQGPNLNGLFGRQSGTTAGYSYSTANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 63  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Carg26075 vs. TAIR 10
Match: AT1G22840.1 (CYTOCHROME C-1 )

HSP 1 Score: 153.7 bits (387), Expect = 9.2e-38
Identity = 80/110 (72.73%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GN+KA                       GPNLNGLFGRQSGTTAGYSYSAANK
Sbjct: 3   SFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           N AV WEEK LYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE+TA
Sbjct: 63  NKAVEWEEKALYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKESTA 112

[Close]

BLAST of Carg26075 vs. TAIR 10
Match: AT4G10040.1 (cytochrome c-2 )

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-37
Identity = 80/110 (72.73%), Postives = 81/110 (73.64%), Query Frame = 0


Query: 30  SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
           SFDE P GN KA                       GPNLNGLFGRQSGTT GYSYSAANK
Sbjct: 3   SFDEAPPGNPKAGEKIFRTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANK 62

Query: 90  NMAVIWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEATA 117
           +MAV WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKE TA
Sbjct: 63  SMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKEGTA 112

[Close]

BLAST of Carg26075 vs. TAIR 10
Match: AT1G22840.2 (CYTOCHROME C-1 )

HSP 1 Score: 94.4 bits (233), Expect = 6.6e-20
Identity = 51/82 (62.20%), Postives = 53/82 (64.63%), Query Frame = 0


Query: 30 SFDEGPSGNSKA-----------------------GPNLNGLFGRQSGTTAGYSYSAANK 89
          SFDE P GN+KA                       GPNLNGLFGRQSGTTAGYSYSAANK
Sbjct: 3  SFDEAPPGNAKAGEKIFRTKCAQCHTVEAGAGHKQGPNLNGLFGRQSGTTAGYSYSAANK 62

The following BLAST results are available for this feature:

BLAST of Carg26075 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028432.1	1.4e-59	100.00	hypothetical protein SDJN02_09613, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022932892.1	1.6e-36	77.27	cytochrome c [Cucurbita moschata] >XP_023520614.1 cytochrome c [Cucurbita pepo s...	[more]
XP_022973349.1	4.7e-36	76.36	cytochrome c-like [Cucurbita maxima]	[more]
XP_038893188.1	8.1e-36	66.92	cytochrome c [Benincasa hispida]	[more]
XP_022930036.1	1.4e-35	75.45	cytochrome c [Cucurbita moschata] >XP_022994612.1 cytochrome c [Cucurbita maxima...	[more]

BLAST of Carg26075 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P00052	3.1e-38	74.55	Cytochrome c OS=Vigna radiata var. radiata OX=3916 PE=1 SV=1	[more]
P00051	4.0e-38	75.45	Cytochrome c OS=Cucurbita maxima OX=3661 PE=1 SV=1	[more]
P62772	6.9e-38	75.45	Cytochrome c OS=Brassica napus OX=3708 PE=1 SV=1	[more]
P62773	6.9e-38	75.45	Cytochrome c OS=Brassica oleracea OX=3712 PE=1 SV=1	[more]
P00053	2.6e-37	69.09	Cytochrome c OS=Cannabis sativa OX=3483 PE=1 SV=1	[more]

BLAST of Carg26075 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EY20	7.9e-37	77.27	cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111439394 PE=3 SV=1	[more]
A0A6J1IEB6	2.3e-36	76.36	cytochrome c-like OS=Cucurbita maxima OX=3661 GN=LOC111471907 PE=3 SV=1	[more]
A0A6J1JWC5	6.7e-36	75.45	cytochrome c OS=Cucurbita maxima OX=3661 GN=LOC111490272 PE=3 SV=1	[more]
A0A6J1EPS9	6.7e-36	75.45	cytochrome c OS=Cucurbita moschata OX=3662 GN=LOC111436470 PE=3 SV=1	[more]
A0A1S3TS68	1.1e-35	74.55	cytochrome c OS=Vigna radiata var. radiata OX=3916 GN=LOC106758147 PE=3 SV=1	[more]

BLAST of Carg26075 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G22840.1	9.2e-38	72.73	CYTOCHROME C-1	[more]
AT4G10040.1	1.6e-37	72.73	cytochrome c-2	[more]
AT1G22840.2	6.6e-20	62.20	CYTOCHROME C-1	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002327	Cytochrome c, class IA/ IB	PRINTS	PR00604	CYTCHRMECIAB	coord: 39..54 score: 69.45 coord: 88..98 score: 81.56 coord: 69..85 score: 58.88 coord: 55..65 score: 61.51 coord: 105..113 score: 78.4
IPR002327	Cytochrome c, class IA/ IB	PANTHER	PTHR11961	CYTOCHROME C	coord: 36..116
IPR009056	Cytochrome c-like domain	PFAM	PF00034	Cytochrom_C	coord: 37..113 e-value: 4.3E-4 score: 21.4
IPR009056	Cytochrome c-like domain	PROSITE	PS51007	CYTC	coord: 2..115 score: 8.923158
IPR036909	Cytochrome c-like domain superfamily	GENE3D	1.10.760.10		coord: 29..114 e-value: 1.1E-30 score: 108.5
IPR036909	Cytochrome c-like domain superfamily	SUPERFAMILY	46626	Cytochrome c	coord: 36..113
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..48
None	No IPR available	PANTHER	PTHR11961:SF42	CYTOCHROME C-LIKE	coord: 36..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26075-RA	Carg26075-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0020037	heme binding