Carg26043 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg26043
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionFAS1 domain-containing protein
LocationCarg_Chr04: 16553727 .. 16554623 (+)
RNA-Seq ExpressionCarg26043
SyntenyCarg26043
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTGCTTTGGGTACAAGCTCTCATGGCTTTGTTTTGGGCTTCCCCAAAAAGGTCTCGTACCAATAGAGATAATATTACTCACTTATAAGCCCACAATCTTTCACTAAATTAATCAACGTGGGACTCACTCGCAAACATCCCCCAATCGCCCCTCTCCCTTCTCCAGTACCACCTCCTTCCTCACGCCTTATCTTTTCAGAGCCTCCGATATCTACCCTCCGGCGCCAAGATCTCCACCATGCTTTCGACCGATTCCTCACCTCACTAACATTGGTGATCAGATTTCACTCAACAATGTTACCGTTGATAAGCCGCCGCTCTACGACGATGGATCTCTCATAATCTTTGGAATCGAGAAGTTCTTCAATCCATTCTTCGAGAGTTGGGACGTGTATACCAAGAGAATCATCCGGCCTGATCTTGACTGCCGCAGTTCTTCGATTCAAAGCGATCCGATCGGGCCTCTGGCGGCGGTGCTGAGAAACAGAGGCTTATCGGTGATGGTTTCTTTTCTCGAGCTGCAGTTTCTAGGGTTTCATAAACAACCGGCGTTGACGATTTTCGCTCCGCCCGATGGTTCTTTGATGAATGTAATTTCTCGGATTGGAGATCAATCTTTCGCCCGCATGTCGTCCCCTGCAAACTACGATGGTCGGATCTGGCAGAATTTTCGGATGGAACTGAAGTAAGGACGTACTTGAGAGGGTTTGGCATCAATGTGAATCGGAGTGGTGGTGTTTTGATGGTGAACAACATGTCGGTTATCTTTCCTGACATGTTCTACAGCGAGAGGATAGTCGTTCATGGCATTGGGGGAATTCTTGAGATGCAAAAGAAAACGAAAAGATCTGAAATGGGGATGCAAGTGAAAGCAACACAAATCAAGCTGTAG

mRNA sequence

ATGGCTTTGCTTTGGGTACAAGCTCTCATGGCTTTGTTTTGGGCTTCCCCAAAAAGTACCACCTCCTTCCTCACGCCTTATCTTTTCAGAGCCTCCGATATCTACCCTCCGGCGCCAAGATCTCCACCATGCTTTCGACCGATTCCTCACCTCACTAACATTGGTGATCAGATTTCACTCAACAATGTTACCGTTGATAAGCCGCCGCTCTACGACGATGGATCTCTCATAATCTTTGGAATCGAGAAGTTCTTCAATCCATTCTTCGAGAGTTGGGACGTGTATACCAAGAGAATCATCCGGCCTGATCTTGACTGCCGCAGTTCTTCGATTCAAAGCGATCCGATCGGGCCTCTGGCGGCGGTGCTGAGAAACAGAGGCTTATCGGTGATGGTTTCTTTTCTCGAGCTGCAGTTTCTAGGGTTTCATAAACAACCGGCGTTGACGATTTTCGCTCCGCCCGATGAATTTTCGGATGGAACTGAAGTAAGGACGTACTTGAGAGGGTTTGGCATCAATGTGAATCGGAGTGGTGGTGTTTTGATGGTGAACAACATGTCGGTTATCTTTCCTGACATGTTCTACAGCGAGAGGATAGTCGTTCATGGCATTGGGGGAATTCTTGAGATGCAAAAGAAAACGAAAAGATCTGAAATGGGGATGCAAGTGAAAGCAACACAAATCAAGCTGTAG

Coding sequence (CDS)

ATGGCTTTGCTTTGGGTACAAGCTCTCATGGCTTTGTTTTGGGCTTCCCCAAAAAGTACCACCTCCTTCCTCACGCCTTATCTTTTCAGAGCCTCCGATATCTACCCTCCGGCGCCAAGATCTCCACCATGCTTTCGACCGATTCCTCACCTCACTAACATTGGTGATCAGATTTCACTCAACAATGTTACCGTTGATAAGCCGCCGCTCTACGACGATGGATCTCTCATAATCTTTGGAATCGAGAAGTTCTTCAATCCATTCTTCGAGAGTTGGGACGTGTATACCAAGAGAATCATCCGGCCTGATCTTGACTGCCGCAGTTCTTCGATTCAAAGCGATCCGATCGGGCCTCTGGCGGCGGTGCTGAGAAACAGAGGCTTATCGGTGATGGTTTCTTTTCTCGAGCTGCAGTTTCTAGGGTTTCATAAACAACCGGCGTTGACGATTTTCGCTCCGCCCGATGAATTTTCGGATGGAACTGAAGTAAGGACGTACTTGAGAGGGTTTGGCATCAATGTGAATCGGAGTGGTGGTGTTTTGATGGTGAACAACATGTCGGTTATCTTTCCTGACATGTTCTACAGCGAGAGGATAGTCGTTCATGGCATTGGGGGAATTCTTGAGATGCAAAAGAAAACGAAAAGATCTGAAATGGGGATGCAAGTGAAAGCAACACAAATCAAGCTGTAG

Protein sequence

MALLWVQALMALFWASPKSTTSFLTPYLFRASDIYPPAPRSPPCFRPIPHLTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDCRSSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDEFSDGTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMFYSERIVVHGIGGILEMQKKTKRSEMGMQVKATQIKL
Homology
BLAST of Carg26043 vs. NCBI nr
Match: KAG7032549.1 (hypothetical protein SDJN02_06598, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466.1 bits (1198), Expect = 1.8e-127
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0

Query: 1   MALLWVQALMALFWASPKSTTSFLTPYLFRASDIYPPAPRSPPCFRPIPHLTNIGDQISL 60
           MALLWVQALMALFWASPKSTTSFLTPYLFRASDIYPPAPRSPPCFRPIPHLTNIGDQISL
Sbjct: 1   MALLWVQALMALFWASPKSTTSFLTPYLFRASDIYPPAPRSPPCFRPIPHLTNIGDQISL 60

Query: 61  NNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDCRSSSIQSDPIGPLA 120
           NNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDCRSSSIQSDPIGPLA
Sbjct: 61  NNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDCRSSSIQSDPIGPLA 120

Query: 121 AVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDEFSDGTEVRTYLRGFGINVNRSGGV 180
           AVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDEFSDGTEVRTYLRGFGINVNRSGGV
Sbjct: 121 AVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDEFSDGTEVRTYLRGFGINVNRSGGV 180

Query: 181 LMVNNMSVIFPDMFYSERIVVHGIGGILEMQKKTKRSEMGMQVKATQIKL 231
           LMVNNMSVIFPDMFYSERIVVHGIGGILEMQKKTKRSEMGMQVKATQIKL
Sbjct: 181 LMVNNMSVIFPDMFYSERIVVHGIGGILEMQKKTKRSEMGMQVKATQIKL 230

BLAST of Carg26043 vs. NCBI nr
Match: KAG6601841.1 (hypothetical protein SDJN03_07074, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 280.4 bits (716), Expect = 1.4e-71
Identity = 149/189 (78.84%), Postives = 154/189 (81.48%), Query Frame = 0

Query: 45  FRPIPHLTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDL 104
           FRPIPHLTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDL
Sbjct: 21  FRPIPHLTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDL 80

Query: 105 DCRSSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDEFSDGTEVR 164
           DCRSSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHK+PALTIFAPPD        R
Sbjct: 81  DCRSSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHKEPALTIFAPPDGSLMNVISR 140

Query: 165 TYLRGF---GINVNRSGGVLMVNNMSVIFPDMFYSERIVVHGIGGILEMQKKTKRSEMGM 224
              + F       N  G +     M +       +ERIVVHGIGGILEMQKKTKRSEMGM
Sbjct: 141 IGDQSFARMSSPANYDGRIWQNFRMEL-------NERIVVHGIGGILEMQKKTKRSEMGM 200

Query: 225 QVKATQIKL 231
           QVKATQIKL
Sbjct: 201 QVKATQIKL 202

BLAST of Carg26043 vs. NCBI nr
Match: XP_022152344.1 (putative fasciclin-like arabinogalactan protein 20 [Momordica charantia])

HSP 1 Score: 232.3 bits (591), Expect = 4.3e-57
Identity = 122/193 (63.21%), Postives = 140/193 (72.54%), Query Frame = 0

Query: 57  QISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDC-RSSSIQSDP 116
           +ISLNNVTV   P+YDDGSL+IFGIEKFF+PFFES  V ++RI+RPDL+C  SSSIQSDP
Sbjct: 124 RISLNNVTVGASPVYDDGSLVIFGIEKFFDPFFESSAVDSRRIVRPDLECGDSSSIQSDP 183

Query: 117 IGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPD-------------------- 176
           +G LAA LRNRG SVM SFL+LQFLGFH+QPALT+ AP D                    
Sbjct: 184 VGVLAAALRNRGWSVMASFLDLQFLGFHRQPALTVLAPTDDSLMNRVSNFTDWRSIFRRH 243

Query: 177 ------------EFSDGTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMFYSERIVVHG 217
                       +F DGT + TYL+GF INVNRSGGVLM+N+MSVIFPDMFYSE IVVHG
Sbjct: 244 VVPCKLRWSDLADFPDGTRLTTYLKGFNINVNRSGGVLMLNDMSVIFPDMFYSEGIVVHG 303

BLAST of Carg26043 vs. NCBI nr
Match: XP_008437696.2 (PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis melo] >KAA0046313.1 putative fasciclin-like arabinogalactan protein 20 [Cucumis melo var. makuwa] >TYK30479.1 putative fasciclin-like arabinogalactan protein 20 [Cucumis melo var. makuwa])

HSP 1 Score: 214.5 bits (545), Expect = 9.3e-52
Identity = 116/200 (58.00%), Postives = 139/200 (69.50%), Query Frame = 0

Query: 51  LTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDC---R 110
           +TN   +ISLNNVTVD PP+YDDGSLIIFGIEKFFNPFFE  +  +KRII P+ +C   R
Sbjct: 114 VTNDEIRISLNNVTVDTPPVYDDGSLIIFGIEKFFNPFFEISNSSSKRIIHPNNECRRRR 173

Query: 111 SSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDE--------FSD 170
            S I+S+P+  LAA LRNRG SVM SFL++Q LGFHK+PA+TIFAP D+        FSD
Sbjct: 174 DSVIESNPVEALAAALRNRGWSVMASFLDMQILGFHKEPAVTIFAPTDDSLMNRVSNFSD 233

Query: 171 ------------------------GTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMFY 216
                                   GTE++TYLRGFGINV RS GVL +N+ SVI+PDM Y
Sbjct: 234 WMSMFRRHVVPCKLWWSDLTNLGGGTEIKTYLRGFGINVKRSNGVLTLNDRSVIYPDMLY 293

BLAST of Carg26043 vs. NCBI nr
Match: XP_004150482.3 (putative fasciclin-like arabinogalactan protein 20 [Cucumis sativus] >KGN51507.1 hypothetical protein Csa_007973 [Cucumis sativus])

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-47
Identity = 109/200 (54.50%), Postives = 134/200 (67.00%), Query Frame = 0

Query: 51  LTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDCR--- 110
           +TN   +ISLNNVTVD PP+YDDGSLIIFGIEK FNPFF+  +  +KRI+ PD +CR   
Sbjct: 152 VTNDETRISLNNVTVDSPPVYDDGSLIIFGIEKLFNPFFDISNASSKRIMHPDNECRRRG 211

Query: 111 SSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDE--------FSD 170
            S I+S P+  LAA LRNRG +VM SFL+LQ LGFHK+ A+TIFAP D+        FSD
Sbjct: 212 DSEIESKPVEALAAALRNRGWTVMGSFLDLQILGFHKEAAVTIFAPTDDSLMNRVSNFSD 271

Query: 171 ------------------------GTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMFY 216
                                   G E++TYLRGF INV RS GVL +N++SVI+PDM Y
Sbjct: 272 WMSMFRRHVVPCKLWWSDLTNLGGGAEIKTYLRGFVINVKRSNGVLTLNDVSVIYPDMLY 331

BLAST of Carg26043 vs. ExPASy Swiss-Prot
Match: Q9FGW0 (Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana OX=3702 GN=FLA20 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.3e-11
Identity = 56/232 (24.14%), Postives = 103/232 (44.40%), Query Frame = 0

Query: 48  IPHLTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFF-NPFFESWDVYTKRII------ 107
           + + +  G + S+NNV V   P++DDG ++I+G ++FF +P   S D  +   I      
Sbjct: 158 VTNSSRFGGKTSINNVVVQDSPVFDDGYVVIYGSDEFFTSPTKISDDSSSSSSIPSTTSS 217

Query: 108 RPDLDCRSSSIQSDPIGPLAA------------------------VLRNRGLSVMVSFLE 167
              +   SS+ Q+ P   +A+                        +L +RG  ++ +FL 
Sbjct: 218 TGSIPIPSSATQTPPSPNIASDSTRNLPNRSKPVNRFNIFESASRLLMSRGFVIIATFLA 277

Query: 168 LQFLG--FHKQPALTIFAPPDE--------FSD-------------------------GT 214
           LQ           +T+FAP DE        FSD                         G+
Sbjct: 278 LQLEDNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTIFRGHVVSQLLLWKDLQKFAKEGS 337

BLAST of Carg26043 vs. ExPASy TrEMBL
Match: A0A6J1DFR4 (putative fasciclin-like arabinogalactan protein 20 OS=Momordica charantia OX=3673 GN=LOC111020084 PE=3 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 2.1e-57
Identity = 122/193 (63.21%), Postives = 140/193 (72.54%), Query Frame = 0

Query: 57  QISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDC-RSSSIQSDP 116
           +ISLNNVTV   P+YDDGSL+IFGIEKFF+PFFES  V ++RI+RPDL+C  SSSIQSDP
Sbjct: 124 RISLNNVTVGASPVYDDGSLVIFGIEKFFDPFFESSAVDSRRIVRPDLECGDSSSIQSDP 183

Query: 117 IGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPD-------------------- 176
           +G LAA LRNRG SVM SFL+LQFLGFH+QPALT+ AP D                    
Sbjct: 184 VGVLAAALRNRGWSVMASFLDLQFLGFHRQPALTVLAPTDDSLMNRVSNFTDWRSIFRRH 243

Query: 177 ------------EFSDGTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMFYSERIVVHG 217
                       +F DGT + TYL+GF INVNRSGGVLM+N+MSVIFPDMFYSE IVVHG
Sbjct: 244 VVPCKLRWSDLADFPDGTRLTTYLKGFNINVNRSGGVLMLNDMSVIFPDMFYSEGIVVHG 303

BLAST of Carg26043 vs. ExPASy TrEMBL
Match: A0A5D3E3U8 (Putative fasciclin-like arabinogalactan protein 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00210 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 4.5e-52
Identity = 116/200 (58.00%), Postives = 139/200 (69.50%), Query Frame = 0

Query: 51  LTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDC---R 110
           +TN   +ISLNNVTVD PP+YDDGSLIIFGIEKFFNPFFE  +  +KRII P+ +C   R
Sbjct: 114 VTNDEIRISLNNVTVDTPPVYDDGSLIIFGIEKFFNPFFEISNSSSKRIIHPNNECRRRR 173

Query: 111 SSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDE--------FSD 170
            S I+S+P+  LAA LRNRG SVM SFL++Q LGFHK+PA+TIFAP D+        FSD
Sbjct: 174 DSVIESNPVEALAAALRNRGWSVMASFLDMQILGFHKEPAVTIFAPTDDSLMNRVSNFSD 233

Query: 171 ------------------------GTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMFY 216
                                   GTE++TYLRGFGINV RS GVL +N+ SVI+PDM Y
Sbjct: 234 WMSMFRRHVVPCKLWWSDLTNLGGGTEIKTYLRGFGINVKRSNGVLTLNDRSVIYPDMLY 293

BLAST of Carg26043 vs. ExPASy TrEMBL
Match: A0A1S3AV74 (putative fasciclin-like arabinogalactan protein 20 OS=Cucumis melo OX=3656 GN=LOC103483040 PE=3 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 4.5e-52
Identity = 116/200 (58.00%), Postives = 139/200 (69.50%), Query Frame = 0

Query: 51  LTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDC---R 110
           +TN   +ISLNNVTVD PP+YDDGSLIIFGIEKFFNPFFE  +  +KRII P+ +C   R
Sbjct: 114 VTNDEIRISLNNVTVDTPPVYDDGSLIIFGIEKFFNPFFEISNSSSKRIIHPNNECRRRR 173

Query: 111 SSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDE--------FSD 170
            S I+S+P+  LAA LRNRG SVM SFL++Q LGFHK+PA+TIFAP D+        FSD
Sbjct: 174 DSVIESNPVEALAAALRNRGWSVMASFLDMQILGFHKEPAVTIFAPTDDSLMNRVSNFSD 233

Query: 171 ------------------------GTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMFY 216
                                   GTE++TYLRGFGINV RS GVL +N+ SVI+PDM Y
Sbjct: 234 WMSMFRRHVVPCKLWWSDLTNLGGGTEIKTYLRGFGINVKRSNGVLTLNDRSVIYPDMLY 293

BLAST of Carg26043 vs. ExPASy TrEMBL
Match: A0A0A0KSZ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571500 PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 109/200 (54.50%), Postives = 134/200 (67.00%), Query Frame = 0

Query: 51  LTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDCR--- 110
           +TN   +ISLNNVTVD PP+YDDGSLIIFGIEK FNPFF+  +  +KRI+ PD +CR   
Sbjct: 152 VTNDETRISLNNVTVDSPPVYDDGSLIIFGIEKLFNPFFDISNASSKRIMHPDNECRRRG 211

Query: 111 SSSIQSDPIGPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDE--------FSD 170
            S I+S P+  LAA LRNRG +VM SFL+LQ LGFHK+ A+TIFAP D+        FSD
Sbjct: 212 DSEIESKPVEALAAALRNRGWTVMGSFLDLQILGFHKEAAVTIFAPTDDSLMNRVSNFSD 271

Query: 171 ------------------------GTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMFY 216
                                   G E++TYLRGF INV RS GVL +N++SVI+PDM Y
Sbjct: 272 WMSMFRRHVVPCKLWWSDLTNLGGGAEIKTYLRGFVINVKRSNGVLTLNDVSVIYPDMLY 331

BLAST of Carg26043 vs. ExPASy TrEMBL
Match: A0A2N9FCH6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16469 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 83/203 (40.89%), Postives = 121/203 (59.61%), Query Frame = 0

Query: 57  QISLNNVTVDKPPLYDDGSLIIFGIEKFFNPFFESWDVYTKRIIRPDLDCRSSSIQSDPI 116
           +++LNNVTV+  P+YDDGSLIIFGI+KFFNP+F+    +  +    +L+C +S+ QS+ +
Sbjct: 121 RVALNNVTVEGTPVYDDGSLIIFGIDKFFNPYFQFSQRFWSQ--SHNLECIASTFQSNAL 180

Query: 117 ---------GPLAAVLRNRGLSVMVSFLELQFLGFHKQPALTIFAPPDE----------- 176
                       +A LR +G SVM SFL++QFLG  ++P LT+FAP DE           
Sbjct: 181 LVSSGAYSFSQASATLRAKGCSVMASFLDIQFLGSQEKPKLTVFAPVDEVIKIRFGNFSE 240

Query: 177 ----------------------FSDGTEVRTYLRGFGINVNRSGGVLMVNNMSVIFPDMF 218
                                   DGTE+RTY  GF INV+RS G+L++N++ VI+PDM+
Sbjct: 241 YLSSFFHQHVVPCRLLWGDLVNLDDGTELRTYSEGFTINVSRSRGMLLLNDVPVIYPDMY 300

BLAST of Carg26043 vs. TAIR 10
Match: AT5G40940.1 (putative fasciclin-like arabinogalactan protein 20 )

HSP 1 Score: 68.9 bits (167), Expect = 5.9e-12
Identity = 56/232 (24.14%), Postives = 103/232 (44.40%), Query Frame = 0

Query: 48  IPHLTNIGDQISLNNVTVDKPPLYDDGSLIIFGIEKFF-NPFFESWDVYTKRII------ 107
           + + +  G + S+NNV V   P++DDG ++I+G ++FF +P   S D  +   I      
Sbjct: 158 VTNSSRFGGKTSINNVVVQDSPVFDDGYVVIYGSDEFFTSPTKISDDSSSSSSIPSTTSS 217

Query: 108 RPDLDCRSSSIQSDPIGPLAA------------------------VLRNRGLSVMVSFLE 167
              +   SS+ Q+ P   +A+                        +L +RG  ++ +FL 
Sbjct: 218 TGSIPIPSSATQTPPSPNIASDSTRNLPNRSKPVNRFNIFESASRLLMSRGFVIIATFLA 277

Query: 168 LQFLG--FHKQPALTIFAPPDE--------FSD-------------------------GT 214
           LQ           +T+FAP DE        FSD                         G+
Sbjct: 278 LQLEDNTSGNDTKITVFAPIDEAIPNPTTKFSDYVTIFRGHVVSQLLLWKDLQKFAKEGS 337

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7032549.11.8e-127100.00hypothetical protein SDJN02_06598, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601841.11.4e-7178.84hypothetical protein SDJN03_07074, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022152344.14.3e-5763.21putative fasciclin-like arabinogalactan protein 20 [Momordica charantia][more]
XP_008437696.29.3e-5258.00PREDICTED: putative fasciclin-like arabinogalactan protein 20 [Cucumis melo] >KA... [more]
XP_004150482.31.1e-4754.50putative fasciclin-like arabinogalactan protein 20 [Cucumis sativus] >KGN51507.1... [more]
Match NameE-valueIdentityDescription
Q9FGW08.3e-1124.14Putative fasciclin-like arabinogalactan protein 20 OS=Arabidopsis thaliana OX=37... [more]
Match NameE-valueIdentityDescription
A0A6J1DFR42.1e-5763.21putative fasciclin-like arabinogalactan protein 20 OS=Momordica charantia OX=367... [more]
A0A5D3E3U84.5e-5258.00Putative fasciclin-like arabinogalactan protein 20 OS=Cucumis melo var. makuwa O... [more]
A0A1S3AV744.5e-5258.00putative fasciclin-like arabinogalactan protein 20 OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0KSZ55.2e-4854.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G571500 PE=3 SV=1[more]
A0A2N9FCH62.3e-3240.89Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS16469 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G40940.15.9e-1224.14putative fasciclin-like arabinogalactan protein 20 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33985OS02G0491300 PROTEIN-RELATEDcoord: 52..156
NoneNo IPR availablePANTHERPTHR33985:SF26FASCICLIN-LIKE ARABINOGALACTAN PROTEINcoord: 52..156
NoneNo IPR availablePANTHERPTHR33985OS02G0491300 PROTEIN-RELATEDcoord: 157..218
NoneNo IPR availablePANTHERPTHR33985:SF26FASCICLIN-LIKE ARABINOGALACTAN PROTEINcoord: 157..218
IPR036378FAS1 domain superfamilySUPERFAMILY82153FAS1 domaincoord: 114..208

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg26043-RACarg26043-RAmRNA