Carg26036 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg26036
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like
Location	Carg_Chr13: 218531 .. 219178 (-)
RNA-Seq Expression	Carg26036
Synteny	Carg26036

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGGTGTCTAAACCCGGTGGTGGGCCGTCGGAGGGATCATCCGCCGGAGCCTCGGCTGCTGCGACTACTCCGGCTGCGGCTCCGGCGAGCCGGTATGAATCTCAGAAGCGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTGTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTACATGCCTCGGGCTGCCCCTATTTCGGACACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAAGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCTGCCCCGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAAGCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAGAAGCGGAAACGACACGCCGCCTCCGCCTCCGCCCCTGCTCCCACCGCTGCTATTCTGTCGGTCCCTCCAGAGACCCATGTTGTTTTGGCCGGTGAGGATCATCAGCCTGAAACATCTGATCCGAGTGGCGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

mRNA sequence

ATGGATCCGGTGTCTAAACCCGGTGGTGGGCCGTCGGAGGGATCATCCGCCGGAGCCTCGGCTGCTGCGACTACTCCGGCTGCGGCTCCGGCGAGCCGGTATGAATCTCAGAAGCGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTGTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTACATGCCTCGGGCTGCCCCTATTTCGGACACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAAGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCTGCCCCGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAAGCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAGAAGCGGAAACGACACGCCGCCTCCGCCTCCGCCCCTGCTCCCACCGCTGCTATTCTGTCGGTCCCTCCAGAGACCCATGTTGTTTTGGCCGGTGAGGATCATCAGCCTGAAACATCTGATCCGAGTGGCGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

Coding sequence (CDS)

ATGGATCCGGTGTCTAAACCCGGTGGTGGGCCGTCGGAGGGATCATCCGCCGGAGCCTCGGCTGCTGCGACTACTCCGGCTGCGGCTCCGGCGAGCCGGTATGAATCTCAGAAGCGAAGGGATTGGAACACGTTCTTGCAGTATTTGAAGAACCACAAGCCGCCACTGTGTTTAGCGCGTTGCAGTGGCGCTCACGTCATTGAATTCTTGAAGTATTTGGACCAGTTCGGGAAGACTAAGGTACATGCCTCGGGCTGCCCCTATTTCGGACACCCGAACCCACCTGCCCCTTGCCCCTGCCCGCTCAAGCAAGCCTGGGGCAGCCTCGACGCCTTGATCGGCCGCCTCAGAGCCGCCTACGAGGAGAACGGCGGCTGCCCCGAATCAAACCCATTTGCCGCACGCGCCGTCAGGATTTTTCTCCGTGAGGTTCGGGAAGCTCAGGCCAAAGCCAGAGGGATTCCCTACGAGAAAAAGAAGCGGAAACGACACGCCGCCTCCGCCTCCGCCCCTGCTCCCACCGCTGCTATTCTGTCGGTCCCTCCAGAGACCCATGTTGTTTTGGCCGGTGAGGATCATCAGCCTGAAACATCTGATCCGAGTGGCGCTCCTCCGCCGTCGACAACCGCCGCTTCCACCGCCGTATAG

Protein sequence

MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTAAILSVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV

Homology

[Close]

BLAST of Carg26036 vs. NCBI nr
Match: KAG7019116.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 431.8 bits (1109), Expect = 3.5e-117
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60
           MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR
Sbjct: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120

Query: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTAAILSV 180
           EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTAAILSV
Sbjct: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTAAILSV 180

Query: 181 PPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 216
           PPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV
Sbjct: 181 PPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 215

[Close]

BLAST of Carg26036 vs. NCBI nr
Match: KAG6583346.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 423.7 bits (1088), Expect = 9.5e-115
Identity = 212/215 (98.60%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60
           MDPVSKPGGGPSEGSSAGASAAAT PAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR
Sbjct: 1   MDPVSKPGGGPSEGSSAGASAAATAPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120

Query: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTAAILSV 180
           EENGG PESNPFAARAVRIFLREVRE QAKARGIPYEKKKRKRHAASASAPAPTAAILSV
Sbjct: 121 EENGGRPESNPFAARAVRIFLREVREGQAKARGIPYEKKKRKRHAASASAPAPTAAILSV 180

Query: 181 PPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 216
           PPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV
Sbjct: 181 PPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 215

[Close]

BLAST of Carg26036 vs. NCBI nr
Match: XP_022964866.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita moschata])

HSP 1 Score: 416.4 bits (1069), Expect = 1.5e-112
Identity = 212/217 (97.70%), Postives = 212/217 (97.70%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60
           MDPVSKPGGGPSEGSSAGASAAATTPA APASRYESQKRRDWNTFLQYLKNHKPPL LAR
Sbjct: 10  MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 69

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 70  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 129

Query: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHA--ASASAPAPTAAIL 180
           EENGG PESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHA  ASASAPAPTAAIL
Sbjct: 130 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 189

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 216
           SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV
Sbjct: 190 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 226

[Close]

BLAST of Carg26036 vs. NCBI nr
Match: XP_023520079.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 407.9 bits (1047), Expect = 5.4e-110
Identity = 208/217 (95.85%), Postives = 209/217 (96.31%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60
           MDPVSKPGGG SEGSSAGASAAATTPA AP+SRYESQKRRDWNTFLQYLKNHKPPL LAR
Sbjct: 1   MDPVSKPGGGSSEGSSAGASAAATTPAPAPSSRYESQKRRDWNTFLQYLKNHKPPLGLAR 60

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120

Query: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHA--ASASAPAPTAAIL 180
           EENGG PESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHA  ASASAPAPTAAIL
Sbjct: 121 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 180

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 216
           SVPPETHVV AGEDHQPETSDPSGAPPPSTTAAS AV
Sbjct: 181 SVPPETHVVFAGEDHQPETSDPSGAPPPSTTAASAAV 217

[Close]

BLAST of Carg26036 vs. NCBI nr
Match: XP_022970622.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima])

HSP 1 Score: 398.3 bits (1022), Expect = 4.3e-107
Identity = 203/215 (94.42%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60
           MDPVSKPGGGPSE SSAGASAAATTP  APASRYESQKRRDWNTFLQYLKNHKPPL LAR
Sbjct: 10  MDPVSKPGGGPSERSSAGASAAATTP--APASRYESQKRRDWNTFLQYLKNHKPPLSLAR 69

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVH+SGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 70  CSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 129

Query: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTAAILSV 180
           EENGG PESNPFAARAVRIFLREVRE+QAKARGIPYEKKKRKRHAA ASA AP AAILSV
Sbjct: 130 EENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSV 189

Query: 181 PPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 216
           PPETHVVLA  DHQPETSDPSGAPPPSTTAASTAV
Sbjct: 190 PPETHVVLASVDHQPETSDPSGAPPPSTTAASTAV 222

[Close]

BLAST of Carg26036 vs. ExPASy Swiss-Prot
Match: A2Y3I2 (Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-70
Identity = 139/196 (70.92%), Postives = 155/196 (79.08%), Query Frame = 0


Query: 22  AATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKV 81
           A   PAAA  SRYESQKRRDWNTFLQYL+NHKPPL L RCSGAHVIEFLKYLDQFGKTKV
Sbjct: 56  AQQAPAAAGLSRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKV 115

Query: 82  HASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGCPESNPFAARAVRIFL 141
           HA GC YFG PNPPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PESNPFAARAVRI+L
Sbjct: 116 HADGCAYFGEPNPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYL 175

Query: 142 REVREAQAKARGIPYEKKKRKRHAASASAPAPTAA---ILSVPPETHVVL--AGEDHQPE 201
           REVREAQAKARGIPYEKK+++  AA+A+AP    A   +++ P +       AGED   +
Sbjct: 176 REVREAQAKARGIPYEKKRKRGAAAAAAAPPVVVAPPPVVTAPDDATGTSGGAGEDDDDD 235

Query: 202 TSDPSGAPPPSTTAAS 213
            +  SG    +T AAS
Sbjct: 236 EATHSGEQQDTTPAAS 251

[Close]

BLAST of Carg26036 vs. ExPASy Swiss-Prot
Match: Q5W659 (Protein G1-like9 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L9 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.5e-70
Identity = 139/196 (70.92%), Postives = 155/196 (79.08%), Query Frame = 0


Query: 22  AATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKTKV 81
           A   PAAA  SRYESQKRRDWNTFLQYL+NHKPPL L RCSGAHVIEFLKYLDQFGKTKV
Sbjct: 56  AQQAPAAAGLSRYESQKRRDWNTFLQYLRNHKPPLTLPRCSGAHVIEFLKYLDQFGKTKV 115

Query: 82  HASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGCPESNPFAARAVRIFL 141
           HA GC YFG PNPPAPC CPL+QAWGSLDALIGRLRAAYEE+GG PESNPFAARAVRI+L
Sbjct: 116 HADGCAYFGEPNPPAPCACPLRQAWGSLDALIGRLRAAYEESGGRPESNPFAARAVRIYL 175

Query: 142 REVREAQAKARGIPYEKKKRKRHAASASAPAPTAA---ILSVPPETHVVL--AGEDHQPE 201
           REVREAQAKARGIPYEKK+++  AA+A+AP    A   +++ P +       AGED   +
Sbjct: 176 REVREAQAKARGIPYEKKRKRGAAAAAAAPPVVVAPPPVVTAPDDATGTSGGAGEDDDDD 235

Query: 202 TSDPSGAPPPSTTAAS 213
            +  SG    +T AAS
Sbjct: 236 EATHSGEQQDTTPAAS 251

[Close]

BLAST of Carg26036 vs. ExPASy Swiss-Prot
Match: A2XED8 (Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-69
Identity = 131/171 (76.61%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTP-AAAPASRYESQKRRDWNTFLQYLKNHKPPLCLA 60
           MDP    G GPS  ++ GA A A  P   A  SRYESQKRRDWNTFLQYL+NH+PPL LA
Sbjct: 1   MDP---SGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLA 60

Query: 61  RCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAA 120
           RCSGAHVIEFL+YLDQFGKTKVHASGC ++G P+PP PCPCPL+QAWGSLDALIGRLRAA
Sbjct: 61  RCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASA 171
           YEE+GG PESNPFAARAVRI+LREVR++QAKARGIPYEKKKRKR  A+  A
Sbjct: 121 YEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPA 168

[Close]

BLAST of Carg26036 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.7e-69
Identity = 131/171 (76.61%), Postives = 145/171 (84.80%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTP-AAAPASRYESQKRRDWNTFLQYLKNHKPPLCLA 60
           MDP    G GPS  ++ GA A A  P   A  SRYESQKRRDWNTFLQYL+NH+PPL LA
Sbjct: 1   MDP---SGPGPSSAAAGGAPAVAAAPQPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLA 60

Query: 61  RCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAA 120
           RCSGAHVIEFL+YLDQFGKTKVHASGC ++G P+PP PCPCPL+QAWGSLDALIGRLRAA
Sbjct: 61  RCSGAHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASA 171
           YEE+GG PESNPFAARAVRI+LREVR++QAKARGIPYEKKKRKR  A+  A
Sbjct: 121 YEESGGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPA 168

[Close]

BLAST of Carg26036 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-67
Identity = 139/211 (65.88%), Postives = 157/211 (74.41%), Query Frame = 0


Query: 8   GGGPSEGSSAGASAAATTPAAAP---ASRYESQKRRDWNTFLQYLKNHKPPLCLARCSGA 67
           GGG ++  +     A   PA  P    SRYESQKRRDWNTFLQYL+NH+PPL LARCSGA
Sbjct: 4   GGGGADAQAQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSGA 63

Query: 68  HVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENG 127
           HVIEFLKYLDQFGKTKVHASGC Y+G P+PPAPCPCPL+QAWGSLDALIGRLRAAYEE+G
Sbjct: 64  HVIEFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESG 123

Query: 128 GCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTAAILSVPPET 187
             PESNPFAARAVRI+LREVR+AQAKARGIPYEKKKRKR       P P      +PP+ 
Sbjct: 124 HAPESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQQPPPQP-----PLPPQ- 183

Query: 188 HVVLAGEDHQPETSDPSGAPPPSTTAASTAV 216
                   HQP  +  +G    S++AA+ AV
Sbjct: 184 --------HQPGAA--AGEASSSSSAAAAAV 198

[Close]

BLAST of Carg26036 vs. ExPASy TrEMBL
Match: A0A6J1HK49 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN=LOC111464848 PE=3 SV=1)

HSP 1 Score: 416.4 bits (1069), Expect = 7.3e-113
Identity = 212/217 (97.70%), Postives = 212/217 (97.70%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60
           MDPVSKPGGGPSEGSSAGASAAATTPA APASRYESQKRRDWNTFLQYLKNHKPPL LAR
Sbjct: 10  MDPVSKPGGGPSEGSSAGASAAATTPAPAPASRYESQKRRDWNTFLQYLKNHKPPLSLAR 69

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 70  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 129

Query: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHA--ASASAPAPTAAIL 180
           EENGG PESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHA  ASASAPAPTAAIL
Sbjct: 130 EENGGRPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASASAPAPTAAIL 189

Query: 181 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 216
           SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV
Sbjct: 190 SVPPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 226

[Close]

BLAST of Carg26036 vs. ExPASy TrEMBL
Match: A0A6J1HZM2 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=LOC111469553 PE=3 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.1e-107
Identity = 203/215 (94.42%), Postives = 205/215 (95.35%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60
           MDPVSKPGGGPSE SSAGASAAATTP  APASRYESQKRRDWNTFLQYLKNHKPPL LAR
Sbjct: 10  MDPVSKPGGGPSERSSAGASAAATTP--APASRYESQKRRDWNTFLQYLKNHKPPLSLAR 69

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVH+SGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY
Sbjct: 70  CSGAHVIEFLKYLDQFGKTKVHSSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 129

Query: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTAAILSV 180
           EENGG PESNPFAARAVRIFLREVRE+QAKARGIPYEKKKRKRHAA ASA AP AAILSV
Sbjct: 130 EENGGRPESNPFAARAVRIFLREVRESQAKARGIPYEKKKRKRHAAFASAAAPAAAILSV 189

Query: 181 PPETHVVLAGEDHQPETSDPSGAPPPSTTAASTAV 216
           PPETHVVLA  DHQPETSDPSGAPPPSTTAASTAV
Sbjct: 190 PPETHVVLASVDHQPETSDPSGAPPPSTTAASTAV 222

[Close]

BLAST of Carg26036 vs. ExPASy TrEMBL
Match: A0A6J1GCE7 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN=LOC111452872 PE=3 SV=1)

HSP 1 Score: 317.8 bits (813), Expect = 3.5e-83
Identity = 174/224 (77.68%), Postives = 182/224 (81.25%), Query Frame = 0


Query: 1   MDPVSKPGGGPS-----EGSSAGASA-AATTPAAAPASRYESQKRRDWNTFLQYLKNHKP 60
           MD V++ GGG S     EGSSAG SA  A   AAAP SRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVTESGGGGSSEPTGEGSSAGGSAPLAAAAAAAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120
           PL LARCSGAHVIEFLKYLDQFGKTKVH SGCPYFGHPNPPAPCPCPLKQAWGSLDALIG
Sbjct: 61  PLSLARCSGAHVIEFLKYLDQFGKTKVHGSGCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120

Query: 121 RLRAAYEENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPT 180
           RLRAAYEENGG PESNPFAARAVRI+LREVREAQAKARGIPYEKKKRKR AA+ S P PT
Sbjct: 121 RLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRAAANVSVPPPT 180

Query: 181 AAILSVPPETHVVLAGEDHQPETS---DPSGAPPPSTTAASTAV 216
              L+    +  V  G D QPET+   D +G  PPSTTAAST V
Sbjct: 181 DVSLAGSSSSATV--GADIQPETTAAGDQTGDAPPSTTAASTTV 222

[Close]

BLAST of Carg26036 vs. ExPASy TrEMBL
Match: A0A6J1KEN4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=LOC111493161 PE=3 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 5.1e-82
Identity = 172/223 (77.13%), Postives = 180/223 (80.72%), Query Frame = 0


Query: 1   MDPVSKPGGGPS-----EGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPP 60
           MD V++ GGG S     EGSSAG SA     AAAP SRYESQKRRDWNTFLQYLKNHKPP
Sbjct: 1   MDSVTESGGGGSSEPTGEGSSAGGSAPL---AAAPPSRYESQKRRDWNTFLQYLKNHKPP 60

Query: 61  LCLARCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGR 120
           L LARCSGAHVIEFLKYLDQFGKTKVH SGCPYFGHPNPPAPCPCPLKQAWGSLDALIGR
Sbjct: 61  LSLARCSGAHVIEFLKYLDQFGKTKVHGSGCPYFGHPNPPAPCPCPLKQAWGSLDALIGR 120

Query: 121 LRAAYEENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTA 180
           LRAAYEENGG PESNPFAARAVRI+LREVREAQAKARGIPYEKKKRKR A + S P PT 
Sbjct: 121 LRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKRAATNVSVPPPTD 180

Query: 181 AILSVPPETHVVLAGEDHQPETS---DPSGAPPPSTTAASTAV 216
             L+    +  V  G D QPET+   D +G  PPSTTAAST V
Sbjct: 181 VSLAGSSSSATV--GGDIQPETTASGDQTGDAPPSTTAASTTV 218

[Close]

BLAST of Carg26036 vs. ExPASy TrEMBL
Match: A0A5A7UVV8 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00670 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 2.5e-81
Identity = 170/227 (74.89%), Postives = 178/227 (78.41%), Query Frame = 0


Query: 1   MDPVSKP-GGGPSEGSSAGASAAATTPAA-----APASRYESQKRRDWNTFLQYLKNHKP 60
           MD VS+  GGG SE +  G S+A  T  A     AP SRYESQKRRDWNTFLQYLKNHKP
Sbjct: 1   MDSVSESGGGGASESTGEGCSSATGTGTAAAAGVAPPSRYESQKRRDWNTFLQYLKNHKP 60

Query: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120
           PLCLARCSGAHVIEFLKYLDQFGKTKVHAS CPYFGHPNPPAPCPCPLKQAWGSLDALIG
Sbjct: 61  PLCLARCSGAHVIEFLKYLDQFGKTKVHASPCPYFGHPNPPAPCPCPLKQAWGSLDALIG 120

Query: 121 RLRAAYEENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPT 180
           RLRAAYEENGG PESNPFAARAVRI+LREVREAQAKARGIPYEKKKRKR       PAPT
Sbjct: 121 RLRAAYEENGGRPESNPFAARAVRIYLREVREAQAKARGIPYEKKKRKR-------PAPT 180

Query: 181 AAILSVPPETHVVLAGEDHQPETS------DPSGAPPPSTTAASTAV 216
           A        T       D+QPET+      DP+ APPPSTTAAST+V
Sbjct: 181 APPPETSTSTTATTTTGDNQPETTAGGGGDDPAVAPPPSTTAASTSV 220

[Close]

BLAST of Carg26036 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 256.9 bits (655), Expect = 1.4e-68
Identity = 126/163 (77.30%), Postives = 136/163 (83.44%), Query Frame = 0


Query: 1   MDPVSKPGGGPSEGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLAR 60
           M+        P +G   G S  ++ PA    SRYESQKRRDWNTFLQYLKNHKPPL L+R
Sbjct: 1   MESADSGRSDPVKGDDPGPSFVSSPPAT--PSRYESQKRRDWNTFLQYLKNHKPPLALSR 60

Query: 61  CSGAHVIEFLKYLDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAY 120
           CSGAHVIEFLKYLDQFGKTKVH + CPYFGH  PP+PC CPLKQAWGSLDALIGRLRAAY
Sbjct: 61  CSGAHVIEFLKYLDQFGKTKVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAY 120

Query: 121 EENGGCPESNPFAARAVRIFLREVREAQAKARGIPYEKKKRKR 164
           EENGG P+SNPFAARAVRI+LREVRE+QAKARGIPYEKKKRKR
Sbjct: 121 EENGGRPDSNPFAARAVRIYLREVRESQAKARGIPYEKKKRKR 161

[Close]

BLAST of Carg26036 vs. TAIR 10
Match: AT5G58500.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 242.7 bits (618), Expect = 2.8e-64
Identity = 118/160 (73.75%), Postives = 137/160 (85.62%), Query Frame = 0


Query: 13  EGSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKY 72
           EG +A  +AA+   +++  SRYESQKRRDWNTFLQYL+NHKPPL L+RCSGAHV+EFLKY
Sbjct: 2   EGETAAKAAAS---SSSSPSRYESQKRRDWNTFLQYLRNHKPPLNLSRCSGAHVLEFLKY 61

Query: 73  LDQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEE-NGGCPESNP 132
           LDQFGKTKVHA+ CP+FG PNPP+ C CPLKQAWGSLDALIGRLRAA+EE  GG PESNP
Sbjct: 62  LDQFGKTKVHATACPFFGQPNPPSQCTCPLKQAWGSLDALIGRLRAAFEEIGGGLPESNP 121

Query: 133 FAARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAP 172
           FAA+AVRI+L+EVR+ QAKARGIPY+KKKRKR     + P
Sbjct: 122 FAAKAVRIYLKEVRQTQAKARGIPYDKKKRKRPHTDTATP 158

[Close]

BLAST of Carg26036 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.7 bits (613), Expect = 1.1e-63
Identity = 111/149 (74.50%), Postives = 131/149 (87.92%), Query Frame = 0


Query: 15  SSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLD 74
           +S+ +S+++        SRYE+QKRRDWNTF QYL+NH+PPL L+RCSGAHV+EFL+YLD
Sbjct: 30  TSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLD 89

Query: 75  QFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGCPESNPFAA 134
           QFGKTKVH   CP+FGHPNPPAPC CPL+QAWGSLDALIGRLRAA+EENGG PE+NPF A
Sbjct: 90  QFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSPETNPFGA 149

Query: 135 RAVRIFLREVREAQAKARGIPYEKKKRKR 164
           RAVR++LREVR++QAKARGI YEKKKRKR
Sbjct: 150 RAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of Carg26036 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.0 bits (611), Expect = 1.8e-63
Identity = 112/162 (69.14%), Postives = 138/162 (85.19%), Query Frame = 0


Query: 14  GSSAGASAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYL 73
           G  A    ++++  +A +SRYE+QKRRDWNTF QYL+NH+PPL L+RCSGAHV+EFL+YL
Sbjct: 35  GGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYL 94

Query: 74  DQFGKTKVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGCPESNPFA 133
           DQFGKTKVH + C ++GHPNPPAPCPCPL+QAWGSLDALIGRLRAA+EENGG PE+NPF 
Sbjct: 95  DQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFG 154

Query: 134 ARAVRIFLREVREAQAKARGIPYEKKKRKRHAASASAPAPTA 176
           ARAVR++LREVR+ Q+KARG+ YEKKKRKR   S+S  + +A
Sbjct: 155 ARAVRLYLREVRDMQSKARGVSYEKKKRKRPLPSSSTSSSSA 196

[Close]

BLAST of Carg26036 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 231.1 bits (588), Expect = 8.4e-61
Identity = 106/143 (74.13%), Postives = 124/143 (86.71%), Query Frame = 0


Query: 20  SAAATTPAAAPASRYESQKRRDWNTFLQYLKNHKPPLCLARCSGAHVIEFLKYLDQFGKT 79
           S+   TP +  +SRYE+QKRRDWNTF QYL+NH+PPL L  CSGAHV+EFL+YLDQFGKT
Sbjct: 14  SSTQLTPPS--SSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKT 73

Query: 80  KVHASGCPYFGHPNPPAPCPCPLKQAWGSLDALIGRLRAAYEENGGCPESNPFAARAVRI 139
           KVH   C +FG PNPPAPCPCPL+QAWGSLDALIGRLRAAYEENGG PE+NPF +RAVR+
Sbjct: 74  KVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRL 133

Query: 140 FLREVREAQAKARGIPYEKKKRK 163
           FLREVR+ QAKARG+ YEKK+++
Sbjct: 134 FLREVRDFQAKARGVSYEKKRKR 154

The following BLAST results are available for this feature:

BLAST of Carg26036 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7019116.1	3.5e-117	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
KAG6583346.1	9.5e-115	98.60	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subs...	[more]
XP_022964866.1	1.5e-112	97.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita moschata]	[more]
XP_023520079.1	5.4e-110	95.85	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 [Cucurbita pepo subsp. pepo]	[more]
XP_022970622.1	4.3e-107	94.42	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like [Cucurbita maxima]	[more]

BLAST of Carg26036 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2Y3I2	1.5e-70	70.92	Protein G1-like9 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_19565 PE=3 SV=1	[more]
Q5W659	1.5e-70	70.92	Protein G1-like9 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L9 PE=1 SV=1	[more]
A2XED8	3.7e-69	76.61	Protein G1-like7 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_10694 PE=3 SV=1	[more]
Q941W1	3.7e-69	76.61	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
A2Y5N0	1.2e-67	65.88	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]

BLAST of Carg26036 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HK49	7.3e-113	97.70	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HZM2	2.1e-107	94.42	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1GCE7	3.5e-83	77.68	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KEN4	5.1e-82	77.13	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7UVV8	2.5e-81	74.89	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5-like OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Carg26036 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07090.1	1.4e-68	77.30	Protein of unknown function (DUF640)	[more]
AT5G58500.1	2.8e-64	73.75	Protein of unknown function (DUF640)	[more]
AT3G23290.2	1.1e-63	74.50	Protein of unknown function (DUF640)	[more]
AT2G31160.1	1.8e-63	69.14	Protein of unknown function (DUF640)	[more]
AT5G28490.1	8.4e-61	74.13	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 25..146 e-value: 5.6E-65 score: 217.2
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 33..160 score: 81.922241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..215
None	No IPR available	PANTHER	PTHR31165:SF82	PROTEIN G1-LIKE9	coord: 14..174
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 14..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26036-RA	Carg26036-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus