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Carg26028 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AAAAAAAAAAAAAAAAAAAAGAGTAAAGCCCTAACTCTTTCATCCGTGCTCCCCGCCCTCTCCTCCTCCGTTTCAGAAGCTCAGTGTTGCCGCCGCTGCAGCAGCCTCCCTCCTAGCAGTCTTGCCGCTGATTTTTCTACTGCATTGTTACCGGTATTCTTCCGATCTCCATCTATGTCTTTCTTTTCACTTGAAAAACACAAATTAGGACTTGTCTAATGAATAGAACAGCCTTGCGGCAAGCTGTTCTGATTCGGACATAAATCAGTCATCTAATTCTGTTTTCATTCCTAGCTTGATTGATTAACCTTATTTTGATTTGTATATGAGTTTTGCTTAGTTGAAAATTGAAATTCTCTCCCTCAATTAACCAATGCAGTAACCAATGATACTTTGAATTTATGGAAATAAGAACATAAATCCAGACATATTATTGGTTGGAATACGAATCAAACACTGAGAAACTCAAATCTGATTTCAAACATGATTCTAGACATATTTTTCAATTGTTCATTAGGAGTAATCGTTTAGTTAAATGGGAATGAACCAATCACTTTATTCTATGAGCTACTCCCAACAGGGCGATTGGAAATTCATGAAATTCATGTAAAACAATATATGGTCACCTTCAAGAAACGACTCCAAACAACTCAGAAAAATTACACCTGAAAGAAGATGATCCAGGTCCTTCCTATGAAAAATAATGGGCAAAATTGGATTCAATTGTCAACTTCTCCCATCATAAATAGGATTGACTACGTATTCAAGCCATAGCACAGCCATAGCACATGGTTTCGTAAAATCGTTTGATCTTTCCGATCTAAATAAAGTAGGTTTTACATGAACCAAGATTTGGCTCAACATGTTTTACGGTATGGGTTGGAAAAGAACCCAAAAATAAGAACTTAGTTGCCCTCTTACAAAAAAATTAACAAAATGGCCTGATTACCATAGACCCCTTAGACAGGATTCGATCCAAGGTAACGGACCAAACATGGAAAGCAGGAATTACAAGAGAAGTTTCTAATTTTTAACCTTTCTCGCATTCAAGAGTTCTACATGTCATTTTCTGTCATGAAATTCTCACATTTATTTTTTCTCAATTTACTTTGCTCAATTTCATCTTTCAATTTATATAGGTTGCATTTCGATATGAAGTTGACTCTAGTTGGAAGAGCCATTCCTCCATTTTTGTGTGATTAACATTCTTGAAGGCTCAAACAACCAAATTCATTTCCTTCCTCAGTGATAGCTTGTAGTGAAATTCACTAGACTCATCATCTAGCTTATATCTTTTTAGCTTCGATTATGTTTTCCATATATACTTAAGTGGGCTTTGTTTATCCTTGCATGTCAGCATGCACTTTAAATGCTCAGGGATGGAAGTACAGTTGGCCAATAATTTTATCAAGTTTTTAGCTAAATTATTTACTAGTTGTTTGGGAAATTCCAACTTCATTGTGAATATATATCATATTTAGGATGCAAATTTGTTAGTTTCTTTTAAAGCAGTAGCTTTATGTAACAGCCTAAGCTAATCGCTAGCAGATATTTTCCTCTTTGGGCTTTCCCTTCTAGGCTTCCTCTCAAGGTTTTATAAACGCGTCTGTTAGGCAGAGGTTTCCACACCCTTAAAAGGAATGCTTCGTTCCCTTCTCCAACCGTTATGGGATCTCACAATCCACCTCCTTCGGGACCCAGCGTCCTTGCTGGCACACCGACCGGTGTCTGGCTTTGATACCATTTGTAATAGCCTAAACCCACCGCTAGTAGATATTGTCTTCTTTTGACTTTCCTTTTCGGGCTTCCCCTCAAGGTTTGAAAACACGTCTGTTAAGGAGAGGTTTCCACACCCTTATAAGGATGCTTCGTTCTCCTCTCCAACCGATGTGAGGGCTCACACTTCATAAGAAGAGTGAAATTTGAAGTTTGATTCTAGTCTGCTGTTGTGCAGCTATGTATCATATTTAGCCTGTGCTTGAGCTTCATTGACCAAATATCAAGGGACTCTAATGATATGCATCAGTCATTTGAATCTGTTCTTATTTGCTTTAGTTGGATACAATACGACCAAAATGGTTTCTTACTCAATTGTGACTTAATACAAAAACGGTCTCATTGCTTGTGGCGAGAAGCTCGATGAGATCATATTTACAAACACTAGGGGTTGCTACTCTTCCATCCTTTTTGTGTGGCGTAATTCATATGCCTAATCGTTTATTTGTGTTTAAGATTTCATTTGGTGGGATGCATGAAGTTAATTCTAAAAGTTCAGGTTTGAAAATCCATCTGCAGGTTACAAAATTGACAGGAACTTGAAAGACTGTTGCAGTTGCAAAAAGCATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATCGCCATTGGCCGACTTTGTGAGAAGTGTGACGGGAAGTGTGTAATATGTGATTCTTATGTCCGTCCCTGTACTCTCGTTCGGGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGGCGGTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGG AAAAAAAAAAAAAAAAAAAAGAGTAAAGCCCTAACTCTTTCATCCGTGCTCCCCGCCCTCTCCTCCTCCGTTTCAGAAGCTCAGTGTTGCCGCCGCTGCAGCAGCCTCCCTCCTAGCAGTCTTGCCGCTGATTTTTCTACTGCATTGTTACCGACTGTTGCAGTTGCAAAAAGCATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATCGCCATTGGCCGACTTTGTGAGAAGTGTGACGGGAAGTGTGTAATATGTGATTCTTATGTCCGTCCCTGTACTCTCGTTCGGGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGGCGGTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGG AAAAAAAAAAAAAAAAAAAAGAGTAAAGCCCTAACTCTTTCATCCGTGCTCCCCGCCCTCTCCTCCTCCGTTTCAGAAGCTCAGTGTTGCCGCCGCTGCAGCAGCCTCCCTCCTAGCAGTCTTGCCGCTGATTTTTCTACTGCATTGTTACCGACTGTTGCAGTTGCAAAAAGCATGGCCAAGCATCATCCCGATTTGATTATGTGCAGAAAGCAGCCAGGAATCGCCATTGGCCGACTTTGTGAGAAGTGTGACGGGAAGTGTGTAATATGTGATTCTTATGTCCGTCCCTGTACTCTCGTTCGGGTTTGTGATGAATGCAATTACGGGTCTTTCCAAGGGCGGTGTGTGATCTGTGGAGGAGTAGGAATTTCAGATGCCTACTACTGCAAAGAGTGTACACAGCAGGAGAAAGATAGAGATGGATGTCCAAAGATTGTTAACTTAGGCAGTGCAAAAACAGACTTGTTCTATGAACGTAAGAAATATGGGTTCAAGAAACGG KKKKKKKSKALTLSSVLPALSSSVSEAQCCRRCSSLPPSSLAADFSTALLPTVAVAKSMAKHHPDLIMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR Homology
BLAST of Carg26028 vs. NCBI nr
Match: KAG7019124.1 (PHD finger-like domain-containing protein 5B, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 344.0 bits (881), Expect = 7.4e-91 Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. NCBI nr
Match: CAA2961638.1 (PHD finger-like domain-containing 5B [Olea europaea subsp. europaea]) HSP 1 Score: 251.5 bits (641), Expect = 5.0e-63 Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. NCBI nr
Match: CAA2961639.1 (PHD finger-like domain-containing 5B [Olea europaea subsp. europaea]) HSP 1 Score: 251.5 bits (641), Expect = 5.0e-63 Identity = 112/114 (98.25%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. NCBI nr
Match: THG08405.1 (hypothetical protein TEA_015305 [Camellia sinensis var. sinensis]) HSP 1 Score: 251.5 bits (641), Expect = 5.0e-63 Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. NCBI nr
Match: CAF2284836.1 (unnamed protein product [Brassica napus]) HSP 1 Score: 251.1 bits (640), Expect = 6.6e-63 Identity = 111/117 (94.87%), Postives = 116/117 (99.15%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy Swiss-Prot
Match: P0DI19 (PHD finger-like domain-containing protein 5A OS=Arabidopsis thaliana OX=3702 GN=At2g30000 PE=3 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 2.8e-64 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy Swiss-Prot
Match: Q0WMV8 (PHD finger-like domain-containing protein 5B OS=Arabidopsis thaliana OX=3702 GN=At1g07170 PE=3 SV=1) HSP 1 Score: 246.1 bits (627), Expect = 2.8e-64 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy Swiss-Prot
Match: Q7RTV0 (PHD finger-like domain-containing protein 5A OS=Homo sapiens OX=9606 GN=PHF5A PE=1 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 3.2e-60 Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy Swiss-Prot
Match: P83870 (PHD finger-like domain-containing protein 5A OS=Mus musculus OX=10090 GN=Phf5a PE=1 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 3.2e-60 Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy Swiss-Prot
Match: P83871 (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Phf5a PE=2 SV=1) HSP 1 Score: 232.6 bits (592), Expect = 3.2e-60 Identity = 101/110 (91.82%), Postives = 106/110 (96.36%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy TrEMBL
Match: A0A4S4DZR4 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_015305 PE=3 SV=1) HSP 1 Score: 251.5 bits (641), Expect = 2.4e-63 Identity = 113/114 (99.12%), Postives = 114/114 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy TrEMBL
Match: A0A3P6CUE1 (Uncharacterized protein (Fragment) OS=Brassica oleracea OX=3712 GN=BOLC4T27403H PE=3 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 4.2e-63 Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy TrEMBL
Match: A0A0D3C2Y7 (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106339523 PE=3 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 4.2e-63 Identity = 111/117 (94.87%), Postives = 115/117 (98.29%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy TrEMBL
Match: A0A6A5M4Z6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00048175 PE=3 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62 Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Carg26028 vs. ExPASy TrEMBL
Match: A0A445FPW2 (PHD finger-like domain-containing protein 5B OS=Glycine soja OX=3848 GN=D0Y65_047672 PE=3 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 1.6e-62 Identity = 111/114 (97.37%), Postives = 113/114 (99.12%), Query Frame = 0
BLAST of Carg26028 vs. TAIR 10
Match: AT1G07170.1 (PHF5-like protein ) HSP 1 Score: 246.1 bits (627), Expect = 2.0e-65 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. TAIR 10
Match: AT1G07170.2 (PHF5-like protein ) HSP 1 Score: 246.1 bits (627), Expect = 2.0e-65 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. TAIR 10
Match: AT1G07170.3 (PHF5-like protein ) HSP 1 Score: 246.1 bits (627), Expect = 2.0e-65 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
BLAST of Carg26028 vs. TAIR 10
Match: AT2G30000.1 (PHF5-like protein ) HSP 1 Score: 246.1 bits (627), Expect = 2.0e-65 Identity = 109/110 (99.09%), Postives = 110/110 (100.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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