Carg25993 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25993
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	HTH cro/C1-type domain-containing protein
Location	Carg_Chr12: 11596194 .. 11596631 (+)
RNA-Seq Expression	Carg25993
Synteny	Carg25993

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGAGCCGATTCCCGGGAGCCATATCTCAAGATTGGGAGCCTGTAGTGCTCCACAAGTCCAAGCCAAAGGCGCAGGACCTTCGCGATCCAAAGGCCGTGAACCAAGCGATTCGATCCGGCGCGCCCGTCCTGACCGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCCACAGCAGCGCCGGTGAACGCGAGAAAGCTCGAGGAAGGAACCGAGCCGGCGGCGCTCGACCGGGTACCGACGGAGGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAAGCGGAACTTGGGAAGCAGATTAACGAGAGGACTCAGGTGGTGCAGGAGTATGAGAATGGAAAGGCTGTGCCGAATCAGGCCGTTTTGGCTAAGATGGAGAAGGTCTTGGGCGTCAAGCTTCGAGGCAAATCTGGCAAGTAA

mRNA sequence

ATGCCGAGCCGATTCCCGGGAGCCATATCTCAAGATTGGGAGCCTGTAGTGCTCCACAAGTCCAAGCCAAAGGCGCAGGACCTTCGCGATCCAAAGGCCGTGAACCAAGCGATTCGATCCGGCGCGCCCGTCCTGACCGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCCACAGCAGCGCCGGTGAACGCGAGAAAGCTCGAGGAAGGAACCGAGCCGGCGGCGCTCGACCGGGTACCGACGGAGGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAAGCGGAACTTGGGAAGCAGATTAACGAGAGGACTCAGGTGGTGCAGGAGTATGAGAATGGAAAGGCTGTGCCGAATCAGGCCGTTTTGGCTAAGATGGAGAAGGTCTTGGGCGTCAAGCTTCGAGGCAAATCTGGCAAGTAA

Coding sequence (CDS)

ATGCCGAGCCGATTCCCGGGAGCCATATCTCAAGATTGGGAGCCTGTAGTGCTCCACAAGTCCAAGCCAAAGGCGCAGGACCTTCGCGATCCAAAGGCCGTGAACCAAGCGATTCGATCCGGCGCGCCCGTCCTGACCGTGAAGAAGTTCGACGCCGGTTCGAACAAGAAAGCCACAGCAGCGCCGGTGAACGCGAGAAAGCTCGAGGAAGGAACCGAGCCGGCGGCGCTCGACCGGGTACCGACGGAGGTGAGGCATGCGATTCAGAAGGCGCGGCTGGAGAAGAAGATGAGCCAAGCGGAACTTGGGAAGCAGATTAACGAGAGGACTCAGGTGGTGCAGGAGTATGAGAATGGAAAGGCTGTGCCGAATCAGGCCGTTTTGGCTAAGATGGAGAAGGTCTTGGGCGTCAAGCTTCGAGGCAAATCTGGCAAGTAA

Protein sequence

MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLRGKSGK

Homology

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BLAST of Carg25993 vs. NCBI nr
Match: XP_022937454.1 (multiprotein-bridging factor 1c [Cucurbita moschata] >KAG6586426.1 Multiprotein-bridging factor 1c, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021281.1 Multiprotein-bridging factor 1c, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 276.9 bits (707), Expect = 9.6e-71
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRGKSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

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BLAST of Carg25993 vs. NCBI nr
Match: XP_022965996.1 (multiprotein-bridging factor 1c [Cucurbita maxima] >XP_023537921.1 multiprotein-bridging factor 1c [Cucurbita pepo subsp. pepo])

HSP 1 Score: 274.6 bits (701), Expect = 4.8e-70
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAEL KQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRGKSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

[Close]

BLAST of Carg25993 vs. NCBI nr
Match: XP_004139340.1 (multiprotein-bridging factor 1c [Cucumis sativus] >KGN60623.1 hypothetical protein Csa_019517 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 6.7e-64
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK TA
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVTA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKLEEGTEPAALDRV  EVR AIQKARLEKKMSQAEL KQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVAVEVRQAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Carg25993 vs. NCBI nr
Match: TYK10712.1 (multiprotein-bridging factor 1c [Cucumis melo var. makuwa])

HSP 1 Score: 249.6 bits (636), Expect = 1.6e-62
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  A
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQAEL KQINERTQVVQEYENGK
Sbjct: 61  APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Carg25993 vs. NCBI nr
Match: XP_008458302.1 (PREDICTED: multiprotein-bridging factor 1c [Cucumis melo])

HSP 1 Score: 249.2 bits (635), Expect = 2.2e-62
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  A
Sbjct: 68  MPSRFPGALSQDWEPVVLHKAKPKAQVLRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 127

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQAEL KQINERTQVVQEYENGK
Sbjct: 128 APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 187

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 188 AVPNQAVLAKMEKVLGVKLRGRSGK 212

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BLAST of Carg25993 vs. ExPASy Swiss-Prot
Match: Q9LV58 (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 2.2e-57
Identity = 121/148 (81.76%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KA 60
           MPSR+PGA++QDWEPVVLHKSK K+QDLRDPKAVN A+R+G  V TVKKFDAGSNK  K+
Sbjct: 1   MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKS 60

Query: 61  TAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYE 120
           TA PV N +KLEE TEPAA+DRV  EVR  IQKARLEKKMSQA+L KQINERTQVVQEYE
Sbjct: 61  TAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYE 120

Query: 121 NGKAVPNQAVLAKMEKVLGVKLRGKSGK 146
           NGKAVPNQAVLAKMEKVLGVKLRGK GK
Sbjct: 121 NGKAVPNQAVLAKMEKVLGVKLRGKIGK 148

[Close]

BLAST of Carg25993 vs. ExPASy Swiss-Prot
Match: Q9LXT3 (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 1.5e-34
Identity = 77/137 (56.20%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 7   GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNA 66
           G I+QDWEPVV+ K  P A   RD K VN A RSGA + TV+KF+AGSNK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNT 64

Query: 67  RKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGKAVPNQ 126
           +KL++ TE  + DRVPTE++ AI +AR EKK++Q++L   INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLAKMEKVLGVKLRGK 143
            +L+K+E+ LG KLRGK
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]

BLAST of Carg25993 vs. ExPASy Swiss-Prot
Match: Q9SJI8 (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-32
Identity = 72/137 (52.55%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 7   GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNA 66
           G I+QDWEPVV+ K    A   RD K VN A RSGA + TV+KF+AG+NK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNT 64

Query: 67  RKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGKAVPNQ 126
           + L++ TE    +RVPTE++ AI +AR +KK++Q++L + INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLAKMEKVLGVKLRGK 143
            +L+K+E+ LG KLRGK
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]

BLAST of Carg25993 vs. ExPASy Swiss-Prot
Match: Q6GPQ6 (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 GN=edf1 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-20
Identity = 61/132 (46.21%), Postives = 81/132 (61.36%), Query Frame = 0


Query: 12  DWEPV-VLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEE 71
           DW+ V VL K  P A   +  +A+  A R G  V T KK+ AG NK+ T    N  KL+ 
Sbjct: 5   DWDTVTVLRKKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNKQHTITR-NTAKLDR 64

Query: 72  GTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGKAVPNQAVLAK 131
            TE    DRVP EV   IQ+ R  K M+Q +L  +INE+ QV+ +YE GKA+PN  V+ K
Sbjct: 65  ETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGK 124

Query: 132 MEKVLGVKLRGK 143
           +E+V+G+KLRGK
Sbjct: 125 IERVIGLKLRGK 135

[Close]

BLAST of Carg25993 vs. ExPASy Swiss-Prot
Match: Q5ZMC0 (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus OX=9031 GN=EDF1 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 3.1e-19
Identity = 59/132 (44.70%), Postives = 80/132 (60.61%), Query Frame = 0


Query: 12  DWEPV-VLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATAAPVNARKLEE 71
           DW+ V VL K  P A   +  +AV  A R G  V T KK+ AG NK+      N  KL+ 
Sbjct: 5   DWDTVTVLRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNKQHFITK-NTAKLDR 64

Query: 72  GTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGKAVPNQAVLAK 131
            TE    DRVP EV   IQ+ R  K M+Q +L  +INE+ QV+ +YE+G+A+PN  V+ K
Sbjct: 65  ETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMGK 124

Query: 132 MEKVLGVKLRGK 143
           +E+ +G+KLRGK
Sbjct: 125 IERAIGLKLRGK 135

[Close]

BLAST of Carg25993 vs. ExPASy TrEMBL
Match: A0A6J1FB80 (multiprotein-bridging factor 1c OS=Cucurbita moschata OX=3662 GN=LOC111443860 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 4.7e-71
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRGKSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

[Close]

BLAST of Carg25993 vs. ExPASy TrEMBL
Match: A0A6J1HN61 (multiprotein-bridging factor 1c OS=Cucurbita maxima OX=3661 GN=LOC111465714 PE=4 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 2.3e-70
Identity = 144/145 (99.31%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA
Sbjct: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAEL KQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRGKSGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 145

[Close]

BLAST of Carg25993 vs. ExPASy TrEMBL
Match: A0A0A0LFV9 (HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G004720 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.2e-64
Identity = 134/145 (92.41%), Postives = 137/145 (94.48%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK TA
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVTA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKLEEGTEPAALDRV  EVR AIQKARLEKKMSQAEL KQINERTQVVQEYENGK
Sbjct: 61  APVNARKLEEGTEPAALDRVAVEVRQAIQKARLEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Carg25993 vs. ExPASy TrEMBL
Match: A0A5D3CHG2 (Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00210 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 8.0e-63
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  A
Sbjct: 1   MPSRFPGALSQDWEPVVLHKAKPKAQALRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 60

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQAEL KQINERTQVVQEYENGK
Sbjct: 61  APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 120

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 121 AVPNQAVLAKMEKVLGVKLRGRSGK 145

[Close]

BLAST of Carg25993 vs. ExPASy TrEMBL
Match: A0A5A7V2S1 (Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G001220 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.0e-62
Identity = 131/145 (90.34%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA 60
           MPSRFPGA+SQDWEPVVLHK+KPKAQ LRDPKAVNQAIRSGAPV TVKKFDAG NKK  A
Sbjct: 68  MPSRFPGALSQDWEPVVLHKAKPKAQVLRDPKAVNQAIRSGAPVQTVKKFDAGLNKKVAA 127

Query: 61  APVNARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGK 120
           APVNARKL+EGTEPAALDRV  EVR AIQKAR+EKKMSQAEL KQINERTQVVQEYENGK
Sbjct: 128 APVNARKLDEGTEPAALDRVGVEVRQAIQKARVEKKMSQAELAKQINERTQVVQEYENGK 187

Query: 121 AVPNQAVLAKMEKVLGVKLRGKSGK 146
           AVPNQAVLAKMEKVLGVKLRG+SGK
Sbjct: 188 AVPNQAVLAKMEKVLGVKLRGRSGK 212

[Close]

BLAST of Carg25993 vs. TAIR 10
Match: AT3G24500.1 (multiprotein bridging factor 1C )

HSP 1 Score: 223.0 bits (567), Expect = 1.5e-58
Identity = 121/148 (81.76%), Postives = 131/148 (88.51%), Query Frame = 0


Query: 1   MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KA 60
           MPSR+PGA++QDWEPVVLHKSK K+QDLRDPKAVN A+R+G  V TVKKFDAGSNK  K+
Sbjct: 1   MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKS 60

Query: 61  TAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYE 120
           TA PV N +KLEE TEPAA+DRV  EVR  IQKARLEKKMSQA+L KQINERTQVVQEYE
Sbjct: 61  TAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYE 120

Query: 121 NGKAVPNQAVLAKMEKVLGVKLRGKSGK 146
           NGKAVPNQAVLAKMEKVLGVKLRGK GK
Sbjct: 121 NGKAVPNQAVLAKMEKVLGVKLRGKIGK 148

[Close]

BLAST of Carg25993 vs. TAIR 10
Match: AT3G58680.1 (multiprotein bridging factor 1B )

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-35
Identity = 77/137 (56.20%), Postives = 104/137 (75.91%), Query Frame = 0


Query: 7   GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNA 66
           G I+QDWEPVV+ K  P A   RD K VN A RSGA + TV+KF+AGSNK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNT 64

Query: 67  RKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGKAVPNQ 126
           +KL++ TE  + DRVPTE++ AI +AR EKK++Q++L   INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLAKMEKVLGVKLRGK 143
            +L+K+E+ LG KLRGK
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]

BLAST of Carg25993 vs. TAIR 10
Match: AT2G42680.1 (multiprotein bridging factor 1A )

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-33
Identity = 72/137 (52.55%), Postives = 102/137 (74.45%), Query Frame = 0


Query: 7   GAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNKKATA-APVNA 66
           G I+QDWEPVV+ K    A   RD K VN A RSGA + TV+KF+AG+NK A++   +N 
Sbjct: 5   GPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNT 64

Query: 67  RKLEEGTEPAALDRVPTEVRHAIQKARLEKKMSQAELGKQINERTQVVQEYENGKAVPNQ 126
           + L++ TE    +RVPTE++ AI +AR +KK++Q++L + INE+ QV+QEYE+GKA+PNQ
Sbjct: 65  KMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQ 124

Query: 127 AVLAKMEKVLGVKLRGK 143
            +L+K+E+ LG KLRGK
Sbjct: 125 QILSKLERALGAKLRGK 141

[Close]

BLAST of Carg25993 vs. TAIR 10
Match: AT3G24500.2 (multiprotein bridging factor 1C )

HSP 1 Score: 127.5 bits (319), Expect = 8.8e-30
Identity = 67/95 (70.53%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 1  MPSRFPGAISQDWEPVVLHKSKPKAQDLRDPKAVNQAIRSGAPVLTVKKFDAGSNK--KA 60
          MPSR+PGA++QDWEPVVLHKSK K+QDLRDPKAVN A+R+G  V TVKKFDAGSNK  K+
Sbjct: 1  MPSRYPGAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKS 60

Query: 61 TAAPV-NARKLEEGTEPAALDRVPTEVRHAIQKAR 93
          TA PV N +KLEE TEPAA+DRV  EVR  +++ R
Sbjct: 61 TAVPVINTKKLEEETEPAAMDRVKAEVRLCLRRWR 95

The following BLAST results are available for this feature:

BLAST of Carg25993 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022937454.1	9.6e-71	100.00	multiprotein-bridging factor 1c [Cucurbita moschata] >KAG6586426.1 Multiprotein-...	[more]
XP_022965996.1	4.8e-70	99.31	multiprotein-bridging factor 1c [Cucurbita maxima] >XP_023537921.1 multiprotein-...	[more]
XP_004139340.1	6.7e-64	92.41	multiprotein-bridging factor 1c [Cucumis sativus] >KGN60623.1 hypothetical prote...	[more]
TYK10712.1	1.6e-62	90.34	multiprotein-bridging factor 1c [Cucumis melo var. makuwa]	[more]
XP_008458302.1	2.2e-62	90.34	PREDICTED: multiprotein-bridging factor 1c [Cucumis melo]	[more]

BLAST of Carg25993 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LV58	2.2e-57	81.76	Multiprotein-bridging factor 1c OS=Arabidopsis thaliana OX=3702 GN=MBF1C PE=1 SV...	[more]
Q9LXT3	1.5e-34	56.20	Multiprotein-bridging factor 1b OS=Arabidopsis thaliana OX=3702 GN=MBF1B PE=1 SV...	[more]
Q9SJI8	3.2e-32	52.55	Multiprotein-bridging factor 1a OS=Arabidopsis thaliana OX=3702 GN=MBF1A PE=2 SV...	[more]
Q6GPQ6	2.1e-20	46.21	Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis OX=8355 G...	[more]
Q5ZMC0	3.1e-19	44.70	Endothelial differentiation-related factor 1 homolog OS=Gallus gallus OX=9031 GN...	[more]

BLAST of Carg25993 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FB80	4.7e-71	100.00	multiprotein-bridging factor 1c OS=Cucurbita moschata OX=3662 GN=LOC111443860 PE...	[more]
A0A6J1HN61	2.3e-70	99.31	multiprotein-bridging factor 1c OS=Cucurbita maxima OX=3661 GN=LOC111465714 PE=4...	[more]
A0A0A0LFV9	3.2e-64	92.41	HTH cro/C1-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G00...	[more]
A0A5D3CHG2	8.0e-63	90.34	Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7V2S1	1.0e-62	90.34	Multiprotein-bridging factor 1c OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Carg25993 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24500.1	1.5e-58	81.76	multiprotein bridging factor 1C	[more]
AT3G58680.1	1.1e-35	56.20	multiprotein bridging factor 1B	[more]
AT2G42680.1	2.2e-33	52.55	multiprotein bridging factor 1A	[more]
AT3G24500.2	8.8e-30	70.53	multiprotein bridging factor 1C	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001387	Cro/C1-type helix-turn-helix domain	SMART	SM00530	mbf_short4	coord: 87..142 e-value: 2.4E-12 score: 57.0
IPR001387	Cro/C1-type helix-turn-helix domain	PFAM	PF01381	HTH_3	coord: 88..139 e-value: 1.1E-12 score: 47.8
IPR001387	Cro/C1-type helix-turn-helix domain	PROSITE	PS50943	HTH_CROC1	coord: 88..142 score: 13.391214
IPR001387	Cro/C1-type helix-turn-helix domain	CDD	cd00093	HTH_XRE	coord: 87..139 e-value: 3.81354E-11 score: 52.9406
IPR013729	Multiprotein bridging factor 1, N-terminal	PFAM	PF08523	MBF1	coord: 11..80 e-value: 1.7E-19 score: 70.0
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	GENE3D	1.10.260.40		coord: 71..145 e-value: 2.3E-28 score: 99.5
IPR010982	Lambda repressor-like, DNA-binding domain superfamily	SUPERFAMILY	47413	lambda repressor-like DNA-binding domains	coord: 82..139
None	No IPR available	PANTHER	PTHR10245:SF71	MULTIPROTEIN-BRIDGING FACTOR 1C	coord: 1..144
None	No IPR available	PANTHER	PTHR10245	ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25993-RA	Carg25993-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009408	response to heat
biological_process	GO:0009414	response to water deprivation
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity