Carg25990 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25990
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 4517400 .. 4517657 (+)
RNA-Seq Expression	Carg25990
Synteny	Carg25990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCCACGGCACACGGCACCACCGCCGATCGGACCATGGTGGGTCTCATGGCCTCTGGCTATGGAGTTGGCCTTAGTGTTTTGCCTCTTCTTACTGGTCTTGCGCCGTCGAAGTGTCGGAATTGAAGAGACTAATTTTGATGCATCAGCCTGCGGCTGCGCGGCGATGGCGATGGCGGAGCGAGGTGATGGGGTTCAAGTTTCATGGGAATAA

mRNA sequence

ATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCCACGGCACACGGCACCACCGCCGATCGGACCATGGTGGGTCTCATGGCCTCTGGCTATGGAGTTGGCCTTAGTGTTTTGCCTCTTCTTACTGGTCTTGCGCCGTCGAAGTGTCGGAATTGAAGAGACTAATTTTGATGCATCAGCCTGCGGCTGCGCGGCGATGGCGATGGCGGAGCGAGGTGATGGGGTTCAAGTTTCATGGGAATAA

Coding sequence (CDS)

ATGTGGCCCTCCACCTCCTCCACCAGACCTATTGCCGGTGCGTATGGCCCACGGCACACGGCACCACCGCCGATCGGACCATGGTGGGTCTCATGGCCTCTGGCTATGGAGTTGGCCTTAGTGTTTTGCCTCTTCTTACTGGTCTTGCGCCGTCGAAGTGTCGGAATTGAAGAGACTAATTTTGATGCATCAGCCTGCGGCTGCGCGGCGATGGCGATGGCGGAGCGAGGTGATGGGGTTCAAGTTTCATGGGAATAA

Protein sequence

MWPSTSSTRPIAGAYGPRHTAPPPIGPWWVSWPLAMELALVFCLFLLVLRRRSVGIEETNFDASACGCAAMAMAERGDGVQVSWE

Homology

[Close]

BLAST of Carg25990 vs. NCBI nr
Match: KAG7022133.1 (hypothetical protein SDJN02_15862, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 182.6 bits (462), Expect = 1.5e-42
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0


Query: 1  MWPSTSSTRPIAGAYGPRHTAPPPIGPWWVSWPLAMELALVFCLFLLVLRRRSVGIEETN 60
          MWPSTSSTRPIAGAYGPRHTAPPPIGPWWVSWPLAMELALVFCLFLLVLRRRSVGIEETN
Sbjct: 1  MWPSTSSTRPIAGAYGPRHTAPPPIGPWWVSWPLAMELALVFCLFLLVLRRRSVGIEETN 60

Query: 61 FDASACGCAAMAMAERGDGVQVSWE 86
          FDASACGCAAMAMAERGDGVQVSWE
Sbjct: 61 FDASACGCAAMAMAERGDGVQVSWE 85

The following BLAST results are available for this feature:

BLAST of Carg25990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022133.1	1.5e-42	100.00	hypothetical protein SDJN02_15862, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg25990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25990-RA	Carg25990-RA	mRNA