Carg25989 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25989
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein LATERAL ROOT PRIMORDIUM 1
Location	Carg_Chr11: 4517729 .. 4518659 (+)
RNA-Seq Expression	Carg25989
Synteny	Carg25989

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGATTTGACTGTGCTTGGACTCACGTTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGTCAACGCCAAGTTACTGAGCGCCGGCCGCCGCCGCCGCCGCCACTGTGGGACTTCATCGGGGTCCACCTCCGGCGGGAAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACCTCCAACACGAAGCTTCGACACTTGCTCAGGTGATATAAAATCTCCAAACCCTTTCTAGATCGAAATTGCATTTTCATCCCTCGATTTTTCAAACTATTTCATTTCGATCCCGATATTTTCAAATATTATACTTTAATCCCTAAATTGTGATAATTTAATCATTTACGCTCATAAGCTTCCATGAATGTCTATCTACGTTAACAAAAAAAAACGAAATCTGCTAATTTTAAGAGTCAGATGAATCATGTACTAAAAACATGCGAGTTTCGAGTAGAAAATAAAATAAGAGGTCTTTGTCTTAATGCAGCTGCAGATATGAGTTATAAAAGGGCGAAAAAGCTGCCGGAACAAGTAAGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCGACCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGA

mRNA sequence

ATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGATTTGACTGTGCTTGGACTCACGTTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGTCAACGCCAAGTTACTGAGCGCCGGCCGCCGCCGCCGCCGCCACTGTGGGACTTCATCGGGGTCCACCTCCGGCGGGAAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACCTCCAACACGAAGCTTCGACACTTGCTCAGCTGCCGGAACAAGTAAGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCGACCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGA

Coding sequence (CDS)

ATGACTGTGGGAACCAAGCTAAGAAAGACTGCAACCACCGCCGGTGCCGGAGTTGCTGTAAAAGCCGAGGATTTGACTGTGCTTGGACTCACGTTGAAGAGCACGTGGGTTCCAGCAGCCCGGCGGAGAGTCAACGCCAAGTTACTGAGCGCCGGCCGCCGCCGCCGCCGCCACTGTGGGACTTCATCGGGGTCCACCTCCGGCGGGAAAGAAGCCGAGGCTCATTGCATCACAAACAACCACCAATTCTCACACTTCCACTTCCAATACCTCCAACACGAAGCTTCGACACTTGCTCAGCTGCCGGAACAAGTAAGAGCGCCGGCAGTGTTCAAGTGCGTCCGGGTGACGGCGGTGGAGGGTGGCGGTACCGGCGGGAATGAATATGCATATCAAGCCGTGGTGAAGATCGGCGGCCATGTTTTCAAAGGCTATTTATACGACCATGGAGTGGAAGCTAGAGAAGGGTTTCCAATGTTGTCGGATTTGCATCTGGGAGGAGGCGGAGATGGCGGTTCAACATCGTCACCGATCATCGACCCTAGTGATGTTTATGGAAGCTCCGCCGGGCGCGGTGGAGGATTGGCTGGGAGTTCCGGCTATGGTAATCCAATAAATTGA

Protein sequence

MTVGTKLRKTATTAGAGVAVKAEDLTVLGLTLKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKEAEAHCITNNHQFSHFHFQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYGNPIN

Homology

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: KAG7022134.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 402.9 bits (1034), Expect = 1.7e-108
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MTVGTKLRKTATTAGAGVAVKAEDLTVLGLTLKSTWVPAARRRVNAKLLSAGRRRRRHCG 60
           MTVGTKLRKTATTAGAGVAVKAEDLTVLGLTLKSTWVPAARRRVNAKLLSAGRRRRRHCG
Sbjct: 1   MTVGTKLRKTATTAGAGVAVKAEDLTVLGLTLKSTWVPAARRRVNAKLLSAGRRRRRHCG 60

Query: 61  TSSGSTSGGKEAEAHCITNNHQFSHFHFQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVE 120
           TSSGSTSGGKEAEAHCITNNHQFSHFHFQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVE
Sbjct: 61  TSSGSTSGGKEAEAHCITNNHQFSHFHFQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVE 120

Query: 121 GGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIID 180
           GGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIID
Sbjct: 121 GGGTGGNEYAYQAVVKIGGHVFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIID 180

Query: 181 PSDVYGSSAGRGGGLAGSSGYGNPIN 207
           PSDVYGSSAGRGGGLAGSSGYGNPIN
Sbjct: 181 PSDVYGSSAGRGGGLAGSSGYGNPIN 206

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: XP_022933450.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 4.1e-59
Identity = 135/185 (72.97%), Postives = 142/185 (76.76%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR   ++LSA        GTSSGSTSGGK+           +H  T+N  
Sbjct: 130 VKSTWVPAARRR-ERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 189

Query: 92  FSHFH-FQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV 151
              F              +LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV
Sbjct: 190 TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV 249

Query: 152 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY 207
           FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY
Sbjct: 250 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY 309

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: XP_022933451.1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 238.8 bits (608), Expect = 4.1e-59
Identity = 135/184 (73.37%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR   ++LSA        GTSSGSTSGGK+           +H  T+N  
Sbjct: 130 VKSTWVPAARRR-ERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 189

Query: 92  FSHFHFQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVF 151
              F             +LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVF
Sbjct: 190 TRSFD-TCSDMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVF 249

Query: 152 KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYG 207
           KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYG
Sbjct: 250 KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYG 309

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: KAG6588219.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 236.1 bits (601), Expect = 2.7e-58
Identity = 132/185 (71.35%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR    L +A        GTSSGSTSGGK+           +H  T+N  
Sbjct: 186 VKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 245

Query: 92  FSHFH-FQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV 151
              F              +LPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHV
Sbjct: 246 TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHV 305

Query: 152 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY 207
           FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAG SGY
Sbjct: 306 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGY 365

[Close]

BLAST of Carg25989 vs. NCBI nr
Match: KAG7022130.1 (Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.1 bits (601), Expect = 2.7e-58
Identity = 132/185 (71.35%), Postives = 139/185 (75.14%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR    L +A        GTSSGSTSGGK+           +H  T+N  
Sbjct: 156 VKSTWVPAARRRERQVLSAAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 215

Query: 92  FSHFH-FQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV 151
              F              +LPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHV
Sbjct: 216 TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHV 275

Query: 152 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY 207
           FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAG SGY
Sbjct: 276 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGY 335

[Close]

BLAST of Carg25989 vs. ExPASy Swiss-Prot
Match: Q94CK9 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.7e-28
Identity = 86/181 (47.51%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGK-------------EAEAHCIT 91
           +KSTWV AARRR   +++  G       G+S  ++SG K             +A +H  T
Sbjct: 143 VKSTWVSAARRR-ERQVMPTGANPT--AGSSLSTSSGTKKPRIVGSQQQQQQQATSHTST 202

Query: 92  NNHQFSHFHFQYLQHEASTLAQL-PEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKI 151
           +N     F     + +     +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKI
Sbjct: 203 SNTPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKI 262

Query: 152 GGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGG 195
           GGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VYG   G GG
Sbjct: 263 GGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGG 317

[Close]

BLAST of Carg25989 vs. ExPASy Swiss-Prot
Match: O65517 (Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.6e-11
Identity = 64/186 (34.41%), Postives = 87/186 (46.77%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTS---SGSTSGGKEAEAHCITNNHQ-----F 91
           ++STW+P ARRR         R+++ H  TS    GS SGG       I   H+      
Sbjct: 125 VRSTWIPVARRR--------ERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPG 184

Query: 92  SHFHFQYLQHEAST---LAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGH 151
           +    +   H A      A  P +V + A+F+CV+++ V+ GG G  +YAYQ  V IGGH
Sbjct: 185 TSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDG--QYAYQTTVNIGGH 244

Query: 152 VFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSG 207
           +FKG LYD G E+          ++ GG  G          SD   SSAG GGG      
Sbjct: 245 LFKGILYDQGPESS---------YMSGGSGG----------SDHQSSSAGGGGG------ 274

[Close]

BLAST of Carg25989 vs. ExPASy Swiss-Prot
Match: Q9LQZ5 (Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.8e-10
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE-AEAHCITNNHQFSH----- 91
           +KSTWVPAA+RR     L++     +H   SS  T   K   EA    NN    H     
Sbjct: 156 VKSTWVPAAKRRERLAQLAS----LQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGG 215

Query: 92  ---FHFQYLQHEAST----LAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIG 151
               + + +   +++       LP +V +PA+F+CVRV+++E        YAYQ  V IG
Sbjct: 216 SALANTRVVNANSNSGLEVSQHLPPEVNSPAIFRCVRVSSIE-EDEDDQAYAYQTAVNIG 275

Query: 152 GHVFKGYLYDHGVEARE 156
           GH+FKG LYD G E ++
Sbjct: 276 GHIFKGILYDQGPEHQD 287

[Close]

BLAST of Carg25989 vs. ExPASy Swiss-Prot
Match: Q9XGX0 (Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 8.2e-10
Identity = 61/177 (34.46%), Postives = 86/177 (48.59%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKEAEAHCITNNHQFSHFHFQYL 91
           +KSTWVPAA+RR   + LS G++ ++  G      S  K         +   ++      
Sbjct: 151 VKSTWVPAAKRRERQQQLSTGQQPQQLGG------SVPKRQRERIPARSTSMAYTRIPSN 210

Query: 92  QHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYDHGV 151
                 +   P +V + AVF+CVRV++V+       EYAY+  V IGGHVFKG LYD G 
Sbjct: 211 NTSGLEVGNFPPEVSSSAVFRCVRVSSVD---DEEEEYAYKTAVSIGGHVFKGVLYDQGP 270

Query: 152 EAREGFPMLSD-LHLGGGGDGGSTSSPIIDPSD-VYGSSAGRGGGLAGSSGYGNPIN 207
             R      S  L+L   G   S+SSP +  ++ V GS++      A S  Y  PIN
Sbjct: 271 AERSSSGGGSQPLNLITAGPSASSSSPNVSCNNGVVGSTSDHYIDPA-SLNYPTPIN 317

[Close]

BLAST of Carg25989 vs. ExPASy Swiss-Prot
Match: K4B6C9 (Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-08
Identity = 51/178 (28.65%), Postives = 91/178 (51.12%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKEAE---AHCITNNHQFSHFHF 91
           +KSTWVPAA+RR   + L+A +++++    ++ +    ++ E   A  + +    S+ + 
Sbjct: 160 VKSTWVPAAKRRERQQQLAALQQQQQGHNNNNNNHKNKRQREDPSASSLVSTRLPSNTN- 219

Query: 92  QYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVFKGYLYD 151
                    + + P +VR  AVF+C++++++E      ++ AYQA V IGGHVFKG LYD
Sbjct: 220 ------GLEVGKFPSKVRTSAVFQCIQMSSIE---DDEDQLAYQAAVSIGGHVFKGILYD 279

Query: 152 HGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGG--LAGSSGYGNP 205
            G E++    + +      GG  G       + + V  ++   GG    AG S + +P
Sbjct: 280 QGHESQYNNMVAAGGDTSSGGSAGGVQHHHHNSAAVATATTTSGGDATAAGPSNFLDP 327

[Close]

BLAST of Carg25989 vs. ExPASy TrEMBL
Match: A0A6J1EZ30 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111440862 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.0e-59
Identity = 135/184 (73.37%), Postives = 142/184 (77.17%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR   ++LSA        GTSSGSTSGGK+           +H  T+N  
Sbjct: 130 VKSTWVPAARRR-ERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 189

Query: 92  FSHFHFQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVF 151
              F             +LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVF
Sbjct: 190 TRSFD-TCSDMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVF 249

Query: 152 KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYG 207
           KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYG
Sbjct: 250 KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYG 309

[Close]

BLAST of Carg25989 vs. ExPASy TrEMBL
Match: A0A6J1F4X3 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440862 PE=3 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.0e-59
Identity = 135/185 (72.97%), Postives = 142/185 (76.76%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR   ++LSA        GTSSGSTSGGK+           +H  T+N  
Sbjct: 130 VKSTWVPAARRR-ERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 189

Query: 92  FSHFH-FQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV 151
              F              +LPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV
Sbjct: 190 TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV 249

Query: 152 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY 207
           FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY
Sbjct: 250 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY 309

[Close]

BLAST of Carg25989 vs. ExPASy TrEMBL
Match: A0A6J1ID91 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472747 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.7e-58
Identity = 133/185 (71.89%), Postives = 141/185 (76.22%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR   ++LSA        GTSSGSTSGGK+           +H  T+N  
Sbjct: 132 VKSTWVPAARRR-ERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 191

Query: 92  FSHFH-FQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHV 151
              F              +LPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHV
Sbjct: 192 TRSFDTCSAADMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHV 251

Query: 152 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGY 207
           FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAG SGY
Sbjct: 252 FKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGY 311

[Close]

BLAST of Carg25989 vs. ExPASy TrEMBL
Match: A0A6J1IFF1 (protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472747 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.7e-58
Identity = 133/184 (72.28%), Postives = 141/184 (76.63%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR   ++LSA        GTSSGSTSGGK+           +H  T+N  
Sbjct: 132 VKSTWVPAARRR-ERQVLSAAAAAAATGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 191

Query: 92  FSHFHFQYLQHEASTLAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGHVF 151
              F             +LPEQVRAPAVFKCVRVTAVEGGG+GGNEYAYQAVVKIGGHVF
Sbjct: 192 TRSFD-TCSDMSYKRAKKLPEQVRAPAVFKCVRVTAVEGGGSGGNEYAYQAVVKIGGHVF 251

Query: 152 KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSGYG 207
           KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAG SGYG
Sbjct: 252 KGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGGSGYG 311

[Close]

BLAST of Carg25989 vs. ExPASy TrEMBL
Match: A0A5A7UJ85 (Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00230 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 7.1e-49
Identity = 121/186 (65.05%), Postives = 135/186 (72.58%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE---------AEAHCITNNHQ 91
           +KSTWVPAARRR    + +A        GTSSGSTSGGK+           +H  T+N  
Sbjct: 188 VKSTWVPAARRRERQMMGAASDAAAG--GTSSGSTSGGKKPRLIASQTTTNSHTSTSNTP 247

Query: 92  FSHFHFQYLQHEASTLA-QLPEQVRAPAVFKCVRVTAVEGGGT-GGNEYAYQAVVKIGGH 151
              F        +S  A +LPEQ+RAPAVFKCVRVTAVEGG + GGNEYAYQAVVKIGGH
Sbjct: 248 TPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGH 307

Query: 152 VFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSG 207
           VFKGYLYDHGVEAR+GFP +S+LHL   GDGGSTSSP+IDPSDVYGSSA RGGGLAG SG
Sbjct: 308 VFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPSDVYGSSATRGGGLAGGSG 367

[Close]

BLAST of Carg25989 vs. TAIR 10
Match: AT5G12330.2 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 125.6 bits (314), Expect = 4.8e-29
Identity = 86/181 (47.51%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGK-------------EAEAHCIT 91
           +KSTWV AARRR   +++  G       G+S  ++SG K             +A +H  T
Sbjct: 143 VKSTWVSAARRR-ERQVMPTGANPT--AGSSLSTSSGTKKPRIVGSQQQQQQQATSHTST 202

Query: 92  NNHQFSHFHFQYLQHEASTLAQL-PEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKI 151
           +N     F     + +     +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKI
Sbjct: 203 SNTPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKI 262

Query: 152 GGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGG 195
           GGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VYG   G GG
Sbjct: 263 GGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGG 317

[Close]

BLAST of Carg25989 vs. TAIR 10
Match: AT5G12330.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 125.6 bits (314), Expect = 4.8e-29
Identity = 86/181 (47.51%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGK-------------EAEAHCIT 91
           +KSTWV AARRR   +++  G       G+S  ++SG K             +A +H  T
Sbjct: 143 VKSTWVSAARRR-ERQVMPTGANPT--AGSSLSTSSGTKKPRIVGSQQQQQQQATSHTST 202

Query: 92  NNHQFSHFHFQYLQHEASTLAQL-PEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKI 151
           +N     F     + +     +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKI
Sbjct: 203 SNTPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKI 262

Query: 152 GGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGG 195
           GGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VYG   G GG
Sbjct: 263 GGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGG 317

[Close]

BLAST of Carg25989 vs. TAIR 10
Match: AT5G12330.4 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 125.6 bits (314), Expect = 4.8e-29
Identity = 86/181 (47.51%), Postives = 108/181 (59.67%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGK-------------EAEAHCIT 91
           +KSTWV AARRR   +++  G       G+S  ++SG K             +A +H  T
Sbjct: 230 VKSTWVSAARRR-ERQVMPTGANPT--AGSSLSTSSGTKKPRIVGSQQQQQQQATSHTST 289

Query: 92  NNHQFSHFHFQYLQHEASTLAQL-PEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKI 151
           +N     F     + +     +  P QVRA AVFKCVRVTAVE    G +EYAYQAVVKI
Sbjct: 290 SNTPPQSFETSSSRQDGGGSREAWPGQVRAAAVFKCVRVTAVE---DGDDEYAYQAVVKI 349

Query: 152 GGHVFKGYLYDHGVEAREGFPMLSDLHLGGGG---DGGSTSSPIIDPSD-VYGSSAGRGG 195
           GGHVFKG+LYD G+E +EGFP +SDLHLGG     +G S S+PI+DP + VYG   G GG
Sbjct: 350 GGHVFKGFLYDQGLEPKEGFPSMSDLHLGGSANNHNGVSASAPILDPPNVVYGGGGGSGG 404

[Close]

BLAST of Carg25989 vs. TAIR 10
Match: AT4G36260.1 (Lateral root primordium (LRP) protein-related )

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-12
Identity = 64/186 (34.41%), Postives = 87/186 (46.77%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTS---SGSTSGGKEAEAHCITNNHQ-----F 91
           ++STW+P ARRR         R+++ H  TS    GS SGG       I   H+      
Sbjct: 125 VRSTWIPVARRR--------ERQQQLHMSTSGGGGGSGSGGAGGGGSSIPKRHRDPTLPG 184

Query: 92  SHFHFQYLQHEAST---LAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIGGH 151
           +    +   H A      A  P +V + A+F+CV+++ V+ GG G  +YAYQ  V IGGH
Sbjct: 185 TSSSSRLPSHSAGLEMGEASFPGEVSSDALFRCVKMSGVDDGGDG--QYAYQTTVNIGGH 244

Query: 152 VFKGYLYDHGVEAREGFPMLSDLHLGGGGDGGSTSSPIIDPSDVYGSSAGRGGGLAGSSG 207
           +FKG LYD G E+          ++ GG  G          SD   SSAG GGG      
Sbjct: 245 LFKGILYDQGPESS---------YMSGGSGG----------SDHQSSSAGGGGG------ 274

[Close]

BLAST of Carg25989 vs. TAIR 10
Match: AT1G75520.1 (SHI-related sequence 5 )

HSP 1 Score: 67.0 bits (162), Expect = 2.0e-11
Identity = 49/137 (35.77%), Postives = 70/137 (51.09%), Query Frame = 0


Query: 32  LKSTWVPAARRRVNAKLLSAGRRRRRHCGTSSGSTSGGKE-AEAHCITNNHQFSH----- 91
           +KSTWVPAA+RR     L++     +H   SS  T   K   EA    NN    H     
Sbjct: 156 VKSTWVPAAKRRERLAQLAS----LQHHSASSRETQNAKRLREASGGDNNDDKDHSGGGG 215

Query: 92  ---FHFQYLQHEAST----LAQLPEQVRAPAVFKCVRVTAVEGGGTGGNEYAYQAVVKIG 151
               + + +   +++       LP +V +PA+F+CVRV+++E        YAYQ  V IG
Sbjct: 216 SALANTRVVNANSNSGLEVSQHLPPEVNSPAIFRCVRVSSIE-EDEDDQAYAYQTAVNIG 275

Query: 152 GHVFKGYLYDHGVEARE 156
           GH+FKG LYD G E ++
Sbjct: 276 GHIFKGILYDQGPEHQD 287

The following BLAST results are available for this feature:

BLAST of Carg25989 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022134.1	1.7e-108	100.00	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022933450.1	4.1e-59	72.97	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita moschata]	[more]
XP_022933451.1	4.1e-59	73.37	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 [Cucurbita moschata]	[more]
KAG6588219.1	2.7e-58	71.35	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7022130.1	2.7e-58	71.35	Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg25989 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94CK9	6.7e-28	47.51	Protein LATERAL ROOT PRIMORDIUM 1 OS=Arabidopsis thaliana OX=3702 GN=LRP1 PE=1 S...	[more]
O65517	2.6e-11	34.41	Protein SHI RELATED SEQUENCE 2 OS=Arabidopsis thaliana OX=3702 GN=SRS2 PE=1 SV=1	[more]
Q9LQZ5	2.8e-10	35.77	Protein SHI RELATED SEQUENCE 5 OS=Arabidopsis thaliana OX=3702 GN=SRS5 PE=1 SV=1	[more]
Q9XGX0	8.2e-10	34.46	Protein SHORT INTERNODES OS=Arabidopsis thaliana OX=3702 GN=SHI PE=1 SV=1	[more]
K4B6C9	2.0e-08	28.65	Protein EXPRESSION OF TERPENOIDS 1 OS=Solanum lycopersicum OX=4081 GN=EOT1 PE=2 ...	[more]

BLAST of Carg25989 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZ30	2.0e-59	73.37	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1F4X3	2.0e-59	72.97	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1ID91	1.7e-58	71.89	protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A6J1IFF1	1.7e-58	72.28	protein LATERAL ROOT PRIMORDIUM 1-like isoform X2 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A5A7UJ85	7.1e-49	65.05	Protein LATERAL ROOT PRIMORDIUM 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Carg25989 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12330.2	4.8e-29	47.51	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.1	4.8e-29	47.51	Lateral root primordium (LRP) protein-related	[more]
AT5G12330.4	4.8e-29	47.51	Lateral root primordium (LRP) protein-related	[more]
AT4G36260.1	1.8e-12	34.41	Lateral root primordium (LRP) protein-related	[more]
AT1G75520.1	2.0e-11	35.77	SHI-related sequence 5	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF05142	DUF702	coord: 32..152 e-value: 1.0E-26 score: 94.2
None	No IPR available	PANTHER	PTHR31604:SF30	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 32..206
IPR006511	SHORT INTERNODES, C-terminal	TIGRFAM	TIGR01624	TIGR01624	coord: 101..151 e-value: 2.1E-24 score: 83.2
IPR007818	SHI protein family	PANTHER	PTHR31604	PROTEIN LATERAL ROOT PRIMORDIUM 1	coord: 32..206

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25989-RA	Carg25989-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding