Carg25975 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25975
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	succinate dehydrogenase subunit 6, mitochondrial-like
Location	Carg_Chr11: 4622328 .. 4625014 (-)
RNA-Seq Expression	Carg25975
Synteny	Carg25975

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGGAGCTTTCAAGAACGAGATTGCAGAGCTTGAAGAGAACAGCCATCGGCCATCGGGGGGTTCTTCTGCTTTCAATCGGATTAGTTTCTGTATTCTCAAATCGCCGCAACAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATTCCCCTTTCGTCCAGCGCGAGAAGCCCCTTCCTTCCTGGTCTGACTCCGATGTCGAGGAGTTTATTGCTTCCGATCCCGTTCATGGCCCCGTTGTAAATCATCTTCCACTTTCCCTTTCTTTTACTTCCAGATTTATTAATTGTTCATTGGTGTATCTTAAATTAAATGCGGTCGTTCACTCTTTCTCCTTGATAAGGTAAAACAGCTGGAGGTCAATGGAAATGATTGTTTTTACTTTGAGTTTGGGATAATCTATAATTTCTTAGCCCAATGATTGTTGATGCAAAATGGTTATGATCTTGCATTCCTTGTCTCCCTACCCTTGTTGTGCAGTATTGATTTGAAGATTGTTATACTTTTCAATCTTCTGGTGCAGTGTATAGTGTGATTATTAGTAGGGAACTGGACCAAATATTTCCTTTTAACATGCTTTTCATGATCAGCAGTTTATCAGTAAGTGCTGCCCATTACAGGACTACTTAATTACTGTCTTTTGAAATCGTTTTGATCATAATAAGTGAAATAATACTTTGCCTTTTCTTTTCTTTCCCGTCATTGTAATTTGATTATTATCAGTACAATCAAATTGATTTGTTTCATTTAACCCTTTTTCTTGGTTTGTTTAGATTCATTGTTCTATCATGATATATTGCAATCTTGTTTCACCGGGGTTGGAATCAATTGCTTTTTAGTAAAGTATTTGTGAACTGTATTGGTAGATGGTTGTCATCATTCTGATTAATGGAACCTTTTAGCGCACCTATTTCCCTGGTTTTTGTTTGATTTTTATATGCAAAAGTAATTTCCTGTTTATTTTTTGGTTTCATCTGGACTAATATGTATGCCTATAATGCTCTCTAGTTAGATCATGGATTCATTATGTAATCTCCCTTGCCTTCTTAAGGTGAACTACTTGGTCTGGGTGCATGCTCTACGTCGTTTTTCGCTAGCGTATTCCTACACGTTCTTCCTTATGAAATTCCAATAATTACTTAGGCAGCATATCTACTGAGACTACCGGGTTAAGCATGGTTGACATTATGTTTTACATTTTACTTAGAGCTTTACTAGGAGCTCCTATACATGCCCTTTTGGATTCCTCGTTTACAAGCTGCTCGTTTTCTTTTTCAGTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGAAGCCTTATTGGAGCTGTGTCAACTGCAGGCGTTGCCTGGAAATACTCTAGAAGTTTGCATGGTATTCAACCTTGTCTCTCCACTTATCTGCTTCATATTAATCAATGAATAGCAGTAGCATTCAAACTATCATTTATCTCTCATCAGTACTCATTTCTTAATTTCCATTTTCATGCAAGTCCAATATATTCCTCAACCAATTAAGAACATTTTATCATCAGCTAGAACCTTGAACGATACTTAATTATGTCCACAGCTTGATGAAGTCATGACTTTGATTGAGATGAATGAATACTGGCTTAAAATAATTCCTATTTTTTGTATTTATGAGGTGATATTTTAGAGTAGTTTAGGAGTCTCAAGTTGAAACGTGATGTCTTTTGGTAGAATAGTGAAGTCCTCAAGGTTCAAAGTCTTGAGAGTCCCATTTCTAAAAGAGTTGAGGAGCTGGGTTTATATGTCAAGACCTTGGGAATCATTTCTCTATGTTTAAATCTGCTTCAAAGCAAGCCACAAGACACAATAAGTGTATCTAGCGTGTTAAAATGTTGACCACGAGCGACGTGTAAAAGGGTCGTAAACATTTGGTTGCTTACCCTGTAGCTGTGTGTTTGACAGGTGCTGGGCTGTCGTTCCTTGCGGGAGGTGCATTCGGTTGGACTTTCGGCCATGAGATTGCGAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGAGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGCGAGGGACGTTTTTAGGCTCTGATTTGCAGTTGAAGCAACAACACTCGCACTGCTGCTGCCATCTAAAATAAAAATGAAGTGCAACTTTGTTGAAATACAATGGTTGATTGGTTTGTTTTTATGAGTTTAGAAAAGGACTATCCTTTTATTTTTATCTTCTGGAAATGACTGGTTCTAATTTGTAAGCTTGTTACAAATGTACTCATCTTTACCAATAACTACATCAATCCTGCCTTCTTTGTAATGCCTGGTGGACAACGTGAGCTTTACTGCTTGTTTTTCGGCCTTCTTTCTTGATCCAACTTCATGATCCTTCGAGATTTGTTTGTGCTTGACTTAGAATATCCTCCTTTTAAAGCTTTCTACGGGTGAAGAAAGGACGACTTTAGATTACCCAACGACTTTACTTGAACAAGATATGTTCCATACGATGTTCCCATCTAACTGTGCTCCCCGAGTTCTAAGGATCTCGAATGTGAAGATTATTAAAAGGCCTCAAATTTTATTATGAGTTTTATATGTTTATATGAAATATATAAATTAG

mRNA sequence

CAAAAGGAGCTTTCAAGAACGAGATTGCAGAGCTTGAAGAGAACAGCCATCGGCCATCGGGGGGTTCTTCTGCTTTCAATCGGATTAGTTTCTGTATTCTCAAATCGCCGCAACAATTATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATTCCCCTTTCGTCCAGCGCGAGAAGCCCCTTCCTTCCTGGTCTGACTCCGATGTCGAGGAGTTTATTGCTTCCGATCCCGTTCATGGCCCCGTTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGAAGCCTTATTGGAGCTGTGTCAACTGCAGGCGTTGCCTGGAAATACTCTAGAAGTTTGCATGGTGCTGGGCTGTCGTTCCTTGCGGGAGGTGCATTCGGTTGGACTTTCGGCCATGAGATTGCGAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGAGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGCGAGGGACGTTTTTAGGCTCTGATTTGCAGTTGAAGCAACAACACTCGCACTGCTGCTGCCATCTAAAATAAAAATGAAGTGCAACTTTGTTGAAATACAATGGTTGATTGGTTTGTTTTTATGAGTTTAGAAAAGGACTATCCTTTTATTTTTATCTTCTGGAAATGACTGGTTCTAATTTGTAAGCTTGTTACAAATGTACTCATCTTTACCAATAACTACATCAATCCTGCCTTCTTTGTAATGCCTGGTGGACAACGTGAGCTTTACTGCTTGTTTTTCGGCCTTCTTTCTTGATCCAACTTCATGATCCTTCGAGATTTGTTTGTGCTTGACTTAGAATATCCTCCTTTTAAAGCTTTCTACGGGTGAAGAAAGGACGACTTTAGATTACCCAACGACTTTACTTGAACAAGATATGTTCCATACGATGTTCCCATCTAACTGTGCTCCCCGAGTTCTAAGGATCTCGAATGTGAAGATTATTAAAAGGCCTCAAATTTTATTATGAGTTTTATATGTTTATATGAAATATATAAATTAG

Coding sequence (CDS)

ATGGAAGATTCTTCCTCTCAATCCTTCTTCAGGAAGCACTGGGAGGGCTACAAGGAGTTTTGGTCCGAGAGATTCTCGATCCTCGACAACTATTCCCCTTTCGTCCAGCGCGAGAAGCCCCTTCCTTCCTGGTCTGACTCCGATGTCGAGGAGTTTATTGCTTCCGATCCCGTTCATGGCCCCGTTTTGAAGACTGCCAGAGAAGCTGTAAACTTTGGTCTTACAGGAAGCCTTATTGGAGCTGTGTCAACTGCAGGCGTTGCCTGGAAATACTCTAGAAGTTTGCATGGTGCTGGGCTGTCGTTCCTTGCGGGAGGTGCATTCGGTTGGACTTTCGGCCATGAGATTGCGAATCATTGGTATCAACTCTACAGGGTGGACACCATGGGAGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAGCGAGGGACGTTTTTAG

Protein sequence

MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKSEGRF

Homology

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_022927277.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata] >XP_023531100.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6588233.1 Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022147.1 Succinate dehydrogenase subunit 6, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 311.2 bits (796), Expect = 4.7e-81
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 148
           YQLYRVDTMGAQVKFMEWWRNKSEGRF
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 147

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_022965868.1 (succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 304.7 bits (779), Expect = 4.4e-79
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSE 145
           YQLYRVDTMGAQVKFMEWWRNKSE
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSE 144

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_022153276.1 (succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia])

HSP 1 Score: 295.0 bits (754), Expect = 3.5e-76
Identity = 136/147 (92.52%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFGHE+ANHW
Sbjct: 61  PTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEVANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 148
           YQLYR+DTM AQVKFMEWWRNK+EGRF
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKNEGRF 147

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_011660175.1 (succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus] >KAE8653538.1 hypothetical protein Csa_007645 [Cucumis sativus])

HSP 1 Score: 290.8 bits (743), Expect = 6.5e-75
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWS+RFSILDNYSP+VQR+ PLPSWS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSDRFSILDNYSPYVQRQTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEG 146
           YQLYRVDTM AQVKFMEWWRNKSEG
Sbjct: 121 YQLYRVDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Carg25975 vs. NCBI nr
Match: XP_008450314.1 (PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo] >KAA0055944.1 succinate dehydrogenase subunit 6 [Cucumis melo var. makuwa] >TYK28150.1 succinate dehydrogenase subunit 6 [Cucumis melo var. makuwa])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGLSFLAGGAFGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEG 146
           YQLYR+DTM AQVKFMEWWRNKSEG
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Carg25975 vs. ExPASy Swiss-Prot
Match: Q941A6 (Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.7e-55
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKT 65
           S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLPSWS SDVEEFIASDPVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYR 125
           AREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL GG FGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDTMGAQVKFMEWWRNKSE 145
           +DTM AQVKFMEWW  KS+
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

[Close]

BLAST of Carg25975 vs. ExPASy Swiss-Prot
Match: Q6ZCC4 (Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica OX=39947 GN=SDH6 PE=1 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-32
Identity = 64/134 (47.76%), Postives = 86/134 (64.18%), Query Frame = 0


Query: 12  KHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKTAREAVN 71
           +H EG K  W++ FS LD +     R+KPLP W+D+DV+EFIASDPV+GP LK  RE+  
Sbjct: 5   EHVEGIKAHWAKNFSFLDYFKKVYGRDKPLPKWTDADVDEFIASDPVYGPQLKAMRESRK 64

Query: 72  FGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYRVDTMGA 131
           F L G+L+G     G+A KYS++ HG  L+   G   G   G E+A HWYQLY+ D  GA
Sbjct: 65  FALGGALVGGAHLGGIALKYSKAPHGVVLATGFGAICGAVVGSEVAEHWYQLYKTDKQGA 124

Query: 132 QVKFMEWWRNKSEG 146
            ++F+ WW +K  G
Sbjct: 125 NLRFIYWWEDKVAG 138

[Close]

BLAST of Carg25975 vs. ExPASy TrEMBL
Match: A0A6J1EGQ0 (succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111434163 PE=4 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.3e-81
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 148
           YQLYRVDTMGAQVKFMEWWRNKSEGRF
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 147

[Close]

BLAST of Carg25975 vs. ExPASy TrEMBL
Match: A0A6J1HQ77 (succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111465621 PE=4 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.1e-79
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSE 145
           YQLYRVDTMGAQVKFMEWWRNKSE
Sbjct: 121 YQLYRVDTMGAQVKFMEWWRNKSE 144

[Close]

BLAST of Carg25975 vs. ExPASy TrEMBL
Match: A0A6J1DK58 (succinate dehydrogenase subunit 6, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111020802 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 1.7e-76
Identity = 136/147 (92.52%), Postives = 142/147 (96.60%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQREKPLPSWS SDVE FIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYAPYVQREKPLPSWSSSDVEAFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           P LKTAREAVNFGLTGS+IGAVSTAGVAWKYSRSLHGAGLSFLAGG FGWTFGHE+ANHW
Sbjct: 61  PTLKTAREAVNFGLTGSVIGAVSTAGVAWKYSRSLHGAGLSFLAGGVFGWTFGHEVANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEGRF 148
           YQLYR+DTM AQVKFMEWWRNK+EGRF
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKNEGRF 147

[Close]

BLAST of Carg25975 vs. ExPASy TrEMBL
Match: A0A5D3DY28 (Succinate dehydrogenase subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00640 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGLSFLAGGAFGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEG 146
           YQLYR+DTM AQVKFMEWWRNKSEG
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Carg25975 vs. ExPASy TrEMBL
Match: A0A1S3BP04 (succinate dehydrogenase subunit 6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103491959 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.4e-75
Identity = 136/145 (93.79%), Postives = 140/145 (96.55%), Query Frame = 0


Query: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHG 60
           MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSP+VQR  PLPSWS SDVEEFIASDPVHG
Sbjct: 1   MEDSSSQSFFRKHWEGYKEFWSERFSILDNYSPYVQRPTPLPSWSSSDVEEFIASDPVHG 60

Query: 61  PVLKTAREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHW 120
           PVLKTAREAVNFGLTGS+IGAVSTAGVAWKYS+SLHGAGLSFLAGGAFGWTFG EIANHW
Sbjct: 61  PVLKTAREAVNFGLTGSVIGAVSTAGVAWKYSKSLHGAGLSFLAGGAFGWTFGQEIANHW 120

Query: 121 YQLYRVDTMGAQVKFMEWWRNKSEG 146
           YQLYR+DTM AQVKFMEWWRNKSEG
Sbjct: 121 YQLYRLDTMAAQVKFMEWWRNKSEG 145

[Close]

BLAST of Carg25975 vs. TAIR 10
Match: AT1G08480.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, plasma membrane, plastid, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; Has 39 Blast hits to 39 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 216.1 bits (549), Expect = 1.9e-56
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 6   SQSFFRKHWEGYKEFWSERFSILDNYSPFVQREKPLPSWSDSDVEEFIASDPVHGPVLKT 65
           S+SF  K+W G K+FWS+R S  +NY+ F +R+ PLPSWS SDVEEFIASDPVHGP LKT
Sbjct: 4   SESFVGKNWNGLKDFWSDRLSFFENYTRFTKRDAPLPSWSSSDVEEFIASDPVHGPTLKT 63

Query: 66  AREAVNFGLTGSLIGAVSTAGVAWKYSRSLHGAGLSFLAGGAFGWTFGHEIANHWYQLYR 125
           AREAV FG+TG+ +GAVSTA  AWKYSRS HGA LSFL GG FGWTFG E+ANH  QLY+
Sbjct: 64  AREAVTFGVTGAALGAVSTAAFAWKYSRSPHGAALSFLGGGVFGWTFGQEVANHTLQLYK 123

Query: 126 VDTMGAQVKFMEWWRNKSE 145
           +DTM AQVKFMEWW  KS+
Sbjct: 124 LDTMAAQVKFMEWWERKSQ 142

The following BLAST results are available for this feature:

BLAST of Carg25975 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022927277.1	4.7e-81	100.00	succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata] >XP_0...	[more]
XP_022965868.1	4.4e-79	100.00	succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]	[more]
XP_022153276.1	3.5e-76	92.52	succinate dehydrogenase subunit 6, mitochondrial [Momordica charantia]	[more]
XP_011660175.1	6.5e-75	93.79	succinate dehydrogenase subunit 6, mitochondrial [Cucumis sativus] >KAE8653538.1...	[more]
XP_008450314.1	1.1e-74	93.79	PREDICTED: succinate dehydrogenase subunit 6, mitochondrial [Cucumis melo] >KAA0...	[more]

BLAST of Carg25975 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q941A6	2.7e-55	70.50	Succinate dehydrogenase subunit 6, mitochondrial OS=Arabidopsis thaliana OX=3702...	[more]
Q6ZCC4	1.4e-32	47.76	Succinate dehydrogenase subunit 6, mitochondrial OS=Oryza sativa subsp. japonica...	[more]

BLAST of Carg25975 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EGQ0	2.3e-81	100.00	succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita moschata OX=3...	[more]
A0A6J1HQ77	2.1e-79	100.00	succinate dehydrogenase subunit 6, mitochondrial-like OS=Cucurbita maxima OX=366...	[more]
A0A6J1DK58	1.7e-76	92.52	succinate dehydrogenase subunit 6, mitochondrial OS=Momordica charantia OX=3673 ...	[more]
A0A5D3DY28	5.4e-75	93.79	Succinate dehydrogenase subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BP04	5.4e-75	93.79	succinate dehydrogenase subunit 6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC1...	[more]

BLAST of Carg25975 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08480.1	1.9e-56	70.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36708:SF2	SUCCINATE DEHYDROGENASE SUBUNIT 6, MITOCHONDRIAL-LIKE	coord: 3..145
IPR034574	Succinate dehydrogenase subunit 6, mitochondrial	PANTHER	PTHR36708	SUCCINATE DEHYDROGENASE SUBUNIT 6, MITOCHONDRIAL	coord: 3..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25975-RA	Carg25975-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005749	mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone)
molecular_function	GO:0043495	protein-membrane adaptor activity