Carg25972 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25972
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	serine/arginine-rich SC35-like splicing factor SCL30A
Location	Carg_Chr11: 4641384 .. 4644252 (+)
RNA-Seq Expression	Carg25972
Synteny	Carg25972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACTATGCCCTAAACTTACAAATCTGAAGGGCCGCCGTCTGTTTCTCGTAGGAGACTTCAATTTCATCTTCGTGCCCTAATTTGTTCTTCAGCTGCGCTCGATTTGCTCCATCTTCAAGGTTTCCCTCACTTTTTCTCTCAACCATTCACATTCACATTCACGCAACACTTCCAAATCTTGGCCAGTGCATTTAGATAAACACTGAGCATCTTGCATCGATCTGTTCCCGCTTCACTATTTTGAGGTGATTTCCCCCAATTTCTGGCTTTTAATTTCGTATATCATATGGGATTCCATCAAGTTAAGGTTTATTGTTACGTTGTAGTCGCGTACTTTGTTTACTGGATTAATTTAGTTGTGTTGAGAACTTGTCATGACATGTTGAAATAATCTTTAATGGTTAACTCTTGTTCACTTTCTCAGGTACAGCGAGATTCTTGGACAGCCGGCCCCTGTCATTGGTTACTGTACAAATGAGGGGTAGGAGTTACACTCCATCGCCGCCAAGGGGTTATGGCAGGAGGGGCAGGAGCCCTAGCCCTAGGGGACGCTATGGTGGTGGACGTGGGAGAGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGTTTGTTCTTGATGAGTTTGTTTGTTTTTTTGCCCTCAAAAGTCCTATAGAAAGTCTTGAGAAGGAATGGAGGTCGTTTTATTTTGTTTTGCTTTGATAGGAGATAGATTTTAGTATCAAGAAAAAAAAATGGTGGAGAGGAAGGGGTAACAACGAGCCACTTTGTCCAGATAACGGAGTTGAAGAGGCTTTTCCCTGGAGTATTAGAACATTAGAATATTGATGAGAATTCGTATTTAGACAGCTTCGGAAAGAAGCAAAATGCCCTGGACCAGAGAACCTTGTTTAATCTCTTTCTTTGTCTTCTAAGAGCCTTCCATTTCTTCCTAGCTTACGTAGGTCGCATTCAATCTCCATCCACATGTGGTTAAGGGTGCCCTTAGGTTCGCTCACAATGTGTTTGGGTATTCACCAACCCTCAATTAGGCTTGCTGTGATGTGGCTCCGGATTTGTTTAACTTTAATTTTTATATCTCAACGAATCTTGTGGAAATCTACCATTTTTTTTTCAGCTGTAATTGTTATTCAAAATACTATTTATTTTTTGTGTCAATGTTTCTGTTTTGCATTAAGCAAAATAAGTTTTTCTTAACAGCCTTGGAGGGTTGTTTGGCCCCAAGCATGCGTGACACTTTAAAAACGTTGTTGCCACCTTACCACATTATGTTTGTGTGTGTTTTACCACTTTAAATTGTATTATTTCTTTAAGAAGACTAAAGCTAGTTATAGAAATATAGTAGATTTCCTTTCATTTTCTTCTCTCTCACTGCGCCCTTAGTGGAATCAGAAACTCTCCTGCATGGCCATAGTTTTATCCAAACTATTGACTCTTTTCAAGCTCACTTGGGTGCTAGGATGCAGTCTTGTAGTCAGTGGATGGGGGGTCTTTTATTCTGTAAGATATTTCAGTTTCACTCTTTCTTCCACTTATCATCTCTCTGTGGGACTTATATTCATGTAATTTTATGTGGTGGCATGTTCTTGTTCTGATTATCTAGTTTCTTTATATATCTTCACGTGATTTGTAATTAGGAATAGATTGCTGTATCACTATTCTGGAACTTTGTACTGCATATTATTTTTTTTAGAGAAATGCTTTTGCTCCATGCTGTTATTCTTCCTAGCTTACTGATCAAATTCTTAGTAAGAACATGATGAAATCTTGTATGCCACTCATTTATTTCTTTTAATGCAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACGTATACCTACCAAAGGACTATTATACTGGGTGAGCGTTTCTTAGCTGTATGTAGCTTGTGGTTCTTTGGTACTGATGTTAGTTTTTTATTGATGAAGGGAAATTTTGCACCTCGCTCTTATGGTTTTCAAAGAAATTGTTTAAGTTTTACCCAATATCTTTAGTTTCTGACAAATGTTTGATTTATTGCTTTGTTTTGAACATTGTGGTTATTTTCTATGTTGCTTTGTTGTATTGGTTCAGAGGCAAGGGTACCAAATAAATCATTTTTTCCATCATTTCCATGCATCTTTTGAACAAAATGTTTGTAGTTCAATCTTTGGAAAACAATGTTCATGAATTCGTGAAGCAGGCCCTACTTCATGTTCATCTTTCAAATTATTCATTTGATGATGGGGGCATATTTTCTTTCTGGTTCTTTTCTTTTTTTTTTTTTTTTCCTTATCACGTATTAGGTCTGTGTATTGAATGTTTGAAGATTTAACAGTGAAACTAATGTTTTGAAGAAGACATCAAGTAATTAGAGTTCTATTGAAGATGATGTTAATGGTAGTGAAGATTGGAAGGAAGTTGGATTTGAATACATAGAAGATGTTCCAAGTCTTGAAGAATTTCAAGTCATCTTAAATCTGACACATGCAAGGTCAGCAGCCAAGTGCTTGCTTTATTATCACAGACCTTCCATATTGCAAGGGATATGATGGACATTATTATTAGAAAAGGTTTAGGGCAGGCGAAGTACCTGACCTGATTCTGTGGCTTTATATTTTCCTTTTTGTAACTTTTTTTCCTTTTGATTTATTTGTATGACAATTTTGCAGAGAGCCTCGTGGTTTTGGTTTTGTTCAGTATGTAGATCCTGCTGATGCTGCAGATGCTAAACATCAGATGGATGGCTGTGTTCTTCAAGGTCGGGAGATAACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGGTATGAAGCTTCCTCCTAA

mRNA sequence

AAACTATGCCCTAAACTTACAAATCTGAAGGGCCGCCGTCTGTTTCTCGTAGGAGACTTCAATTTCATCTTCGTGCCCTAATTTGTTCTTCAGCTGCGCTCGATTTGCTCCATCTTCAAGGTTTCCCTCACTTTTTCTCTCAACCATTCACATTCACATTCACGCAACACTTCCAAATCTTGGCCAGTGCATTTAGATAAACACTGAGCATCTTGCATCGATCTGTTCCCGCTTCACTATTTTGAGGTACAGCGAGATTCTTGGACAGCCGGCCCCTGTCATTGGTTACTGTACAAATGAGGGGTAGGAGTTACACTCCATCGCCGCCAAGGGGTTATGGCAGGAGGGGCAGGAGCCCTAGCCCTAGGGGACGCTATGGTGGTGGACGTGGGAGAGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACGTATACCTACCAAAGGACTATTATACTGGAGAGCCTCGTGGTTTTGGTTTTGTTCAGTATGTAGATCCTGCTGATGCTGCAGATGCTAAACATCAGATGGATGGCTGTGTTCTTCAAGGTCGGGAGATAACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGGTATGAAGCTTCCTCCTAA

Coding sequence (CDS)

ATGAGGGGTAGGAGTTACACTCCATCGCCGCCAAGGGGTTATGGCAGGAGGGGCAGGAGCCCTAGCCCTAGGGGACGCTATGGTGGTGGACGTGGGAGAGACCTTCCCACTAGCCTTCTAGTTCGTAATCTTCGCCATGACTGCAGGCCCGAGGATCTTCGTAGACAATTTGGACAGTTTGGTGCTATTAAGGACGTATACCTACCAAAGGACTATTATACTGGAGAGCCTCGTGGTTTTGGTTTTGTTCAGTATGTAGATCCTGCTGATGCTGCAGATGCTAAACATCAGATGGATGGCTGTGTTCTTCAAGGTCGGGAGATAACTGTGGTATTTGCTGAGGAAAACAGGAAGAAGCCATCTGATATGAGGGCAAGGGAGAGAGGAAGGTATGAAGCTTCCTCCTAA

Protein sequence

MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQFGAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKPSDMRARERGRYEASS

Homology

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BLAST of Carg25972 vs. NCBI nr
Match: KAG7022150.1 (Serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP
Sbjct: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120

Query: 121 SDMRARERGRYEASS 136
           SDMRARERGRYEASS
Sbjct: 121 SDMRARERGRYEASS 135

[Close]

BLAST of Carg25972 vs. NCBI nr
Match: XP_023531530.1 (serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pepo] >XP_023531531.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP
Sbjct: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           SDMRARERG
Sbjct: 121 SDMRARERG 129

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BLAST of Carg25972 vs. NCBI nr
Match: XP_022927245.1 (serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita moschata] >XP_022927254.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita moschata] >XP_022927262.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita moschata])

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP
Sbjct: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           SDMRARERG
Sbjct: 121 SDMRARERG 129

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BLAST of Carg25972 vs. NCBI nr
Match: XP_023006139.1 (serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita maxima] >XP_023006146.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita maxima] >XP_023006155.1 serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita maxima])

HSP 1 Score: 269.6 bits (688), Expect = 1.4e-68
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP
Sbjct: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           SDMRARERG
Sbjct: 121 SDMRARERG 129

[Close]

BLAST of Carg25972 vs. NCBI nr
Match: XP_022153264.1 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Momordica charantia])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-GRGRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGG GR RDLPTSLLVRNLRHDCRPEDLRRQFGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKK 120
           FGAIKD+YLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVL GRE+TVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERG 130
           PSDMRARERG
Sbjct: 121 PSDMRARERG 130

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BLAST of Carg25972 vs. ExPASy Swiss-Prot
Match: Q9SEU4 (Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=3702 GN=SCL33 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-59
Identity = 109/129 (84.50%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GGR RDLPTSLLVRNLRHDCR EDLR+ F QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRY-GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           G +KD+YLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +L GRE+TVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           ++MRARERG
Sbjct: 121 TEMRARERG 128

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BLAST of Carg25972 vs. ExPASy Swiss-Prot
Match: Q9LHP2 (Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX=3702 GN=SCL30A PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 4.8e-59
Identity = 105/129 (81.40%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGR+GG R  DLPTSLLVRNLRHDCR EDLRR F QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           G +KD+YLP+DYYTG+PRGFGF+Q++DPADAA+AKHQMDG +L GRE+TVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           ++MR R+RG
Sbjct: 121 TEMRTRDRG 129

[Close]

BLAST of Carg25972 vs. ExPASy Swiss-Prot
Match: Q8L3X8 (Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=3702 GN=SCL30 PE=1 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.7e-30
Identity = 73/139 (52.52%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 4   RSYTP---SPP-RGYGRRGRSPSP--------RGRYGGGRGRDLPTSLLVRNLRHDCRPE 63
           R Y+P   SPP RGYG RGRSP P         G  GGGR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRQFGQFGAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVV 123
           +LR  F +FG ++DVY+P+DYY+G+PRGF FV++VD  DA +A+  M+     GREITVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 FAEENRKKPSDMRARERGR 131
            A E+RK+P +MR + R R
Sbjct: 122 VASESRKRPEEMRVKTRTR 140

[Close]

BLAST of Carg25972 vs. ExPASy Swiss-Prot
Match: Q1PDV2 (Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=3702 GN=SCL28 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 8.3e-27
Identity = 70/133 (52.63%), Postives = 85/133 (63.91%), Query Frame = 0


Query: 2   RGRSYTP-----SPPR---GY--GRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPE 61
           R RSY+P     SPPR   GY   R    PS R     G     P+ LL+RNL  D RP 
Sbjct: 7   RSRSYSPRPRDRSPPRERKGYDDNRLRERPSSRDHESSG-----PSGLLIRNLPLDARPN 66

Query: 62  DLRRQFGQFGAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVV 121
           DLR  F +FG +KD+YLP++YYTGEPRGFGFV+Y    DAA+A  +M+  V+ GREI +V
Sbjct: 67  DLRDSFERFGPLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIV 126

Query: 122 FAEENRKKPSDMR 125
           FAEENRK P +MR
Sbjct: 127 FAEENRKTPQEMR 134

[Close]

BLAST of Carg25972 vs. ExPASy Swiss-Prot
Match: O75494 (Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.0e-21
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 37  TSLLVRNLRHDCRPEDLRRQFGQFGAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKH 96
           TSL VRN+  D R EDLRR+FG++G I DVY+P D+YT  PRGF +VQ+ D  DA DA H
Sbjct: 10  TSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALH 69

Query: 97  QMDGCVLQGREITVVFAEENRKKPSDMRARE-RGRYEAS 135
            +D   + GR+I + FA+ +RK P+ M+A+E R  Y +S
Sbjct: 70  NLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRNVYSSS 108

[Close]

BLAST of Carg25972 vs. ExPASy TrEMBL
Match: A0A6J1KZE4 (serine/arginine-rich SC35-like splicing factor SCL30A OS=Cucurbita maxima OX=3661 GN=LOC111498968 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 6.9e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP
Sbjct: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           SDMRARERG
Sbjct: 121 SDMRARERG 129

[Close]

BLAST of Carg25972 vs. ExPASy TrEMBL
Match: A0A6J1EGN8 (serine/arginine-rich SC35-like splicing factor SCL30A OS=Cucurbita moschata OX=3662 GN=LOC111434147 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 6.9e-69
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP
Sbjct: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           SDMRARERG
Sbjct: 121 SDMRARERG 129

[Close]

BLAST of Carg25972 vs. ExPASy TrEMBL
Match: A0A6J1DIJ4 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-GRGRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGG GR RDLPTSLLVRNLRHDCRPEDLRRQFGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKK 120
           FGAIKD+YLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVL GRE+TVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERG 130
           PSDMRARERG
Sbjct: 121 PSDMRARERG 130

[Close]

BLAST of Carg25972 vs. ExPASy TrEMBL
Match: A0A6J1DH06 (serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica charantia OX=3673 GN=LOC111020794 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGG-GRGRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRYGG GR RDLPTSLLVRNLRHDCRPEDLRRQFGQ
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGRGRDRDLPTSLLVRNLRHDCRPEDLRRQFGQ 60

Query: 61  FGAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKK 120
           FGAIKD+YLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVL GRE+TVVFAEENRKK
Sbjct: 61  FGAIKDIYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVFAEENRKK 120

Query: 121 PSDMRARERG 130
           PSDMRARERG
Sbjct: 121 PSDMRARERG 130

[Close]

BLAST of Carg25972 vs. ExPASy TrEMBL
Match: A0A6J1JLK2 (serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485508 PE=4 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.4e-63
Identity = 120/131 (91.60%), Postives = 125/131 (95.42%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GGRGRDLPTSLLVRNLR DCRPEDLRR FGQF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRY-GGRGRDLPTSLLVRNLRRDCRPEDLRRPFGQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           GAIKD+YLPKDY+TGEPRGFGFVQYVDPADAADAKHQMDGCVL GRE+TVV+AEENRKKP
Sbjct: 61  GAIKDIYLPKDYHTGEPRGFGFVQYVDPADAADAKHQMDGCVLLGRELTVVYAEENRKKP 120

Query: 121 SDMRARERGRY 132
           SDMR RERG +
Sbjct: 121 SDMRTRERGSF 130

[Close]

BLAST of Carg25972 vs. TAIR 10
Match: AT1G55310.1 (SC35-like splicing factor 33 )

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-60
Identity = 109/129 (84.50%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GGR RDLPTSLLVRNLRHDCR EDLR+ F QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRY-GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           G +KD+YLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +L GRE+TVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           ++MRARERG
Sbjct: 121 TEMRARERG 128

[Close]

BLAST of Carg25972 vs. TAIR 10
Match: AT1G55310.2 (SC35-like splicing factor 33 )

HSP 1 Score: 229.9 bits (585), Expect = 1.2e-60
Identity = 109/129 (84.50%), Postives = 120/129 (93.02%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GGR RDLPTSLLVRNLRHDCR EDLR+ F QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRY-GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           G +KD+YLP+DYYTG+PRGFGFVQ++DPADAADAKH MDG +L GRE+TVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           ++MRARERG
Sbjct: 121 TEMRARERG 128

[Close]

BLAST of Carg25972 vs. TAIR 10
Match: AT3G13570.1 (SC35-like splicing factor 30A )

HSP 1 Score: 228.4 bits (581), Expect = 3.4e-60
Identity = 105/129 (81.40%), Postives = 119/129 (92.25%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGR+GG R  DLPTSLLVRNLRHDCR EDLRR F QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRFGGSRDSDLPTSLLVRNLRHDCRQEDLRRPFEQF 60

Query: 61  GAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVVFAEENRKKP 120
           G +KD+YLP+DYYTG+PRGFGF+Q++DPADAA+AKHQMDG +L GRE+TVVFAEENRKKP
Sbjct: 61  GPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFAEENRKKP 120

Query: 121 SDMRARERG 130
           ++MR R+RG
Sbjct: 121 TEMRTRDRG 129

[Close]

BLAST of Carg25972 vs. TAIR 10
Match: AT1G55310.3 (SC35-like splicing factor 33 )

HSP 1 Score: 221.1 bits (562), Expect = 5.4e-58
Identity = 109/141 (77.30%), Postives = 120/141 (85.11%), Query Frame = 0


Query: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRYGGGRGRDLPTSLLVRNLRHDCRPEDLRRQFGQF 60
           MRGRSYTPSPPRGYGRRGRSPSPRGRY GGR RDLPTSLLVRNLRHDCR EDLR+ F QF
Sbjct: 1   MRGRSYTPSPPRGYGRRGRSPSPRGRY-GGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQF 60

Query: 61  GAIKDVYLPKDYYTG------------EPRGFGFVQYVDPADAADAKHQMDGCVLQGREI 120
           G +KD+YLP+DYYTG            +PRGFGFVQ++DPADAADAKH MDG +L GRE+
Sbjct: 61  GPVKDIYLPRDYYTGSHLCTDTCKASRDPRGFGFVQFMDPADAADAKHHMDGYLLLGREL 120

Query: 121 TVVFAEENRKKPSDMRARERG 130
           TVVFAEENRKKP++MRARERG
Sbjct: 121 TVVFAEENRKKPTEMRARERG 140

[Close]

BLAST of Carg25972 vs. TAIR 10
Match: AT3G55460.1 (SC35-like splicing factor 30 )

HSP 1 Score: 132.9 bits (333), Expect = 2.0e-31
Identity = 73/139 (52.52%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 4   RSYTP---SPP-RGYGRRGRSPSP--------RGRYGGGRGRDLPTSLLVRNLRHDCRPE 63
           R Y+P   SPP RGYG RGRSP P         G  GGGR      SLLVRN+  DCRPE
Sbjct: 2   RRYSPPYYSPPRRGYGGRGRSPPPPPPRRGYGGGGGGGGRRGSSHGSLLVRNIPLDCRPE 61

Query: 64  DLRRQFGQFGAIKDVYLPKDYYTGEPRGFGFVQYVDPADAADAKHQMDGCVLQGREITVV 123
           +LR  F +FG ++DVY+P+DYY+G+PRGF FV++VD  DA +A+  M+     GREITVV
Sbjct: 62  ELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMNRRSFAGREITVV 121

Query: 124 FAEENRKKPSDMRARERGR 131
            A E+RK+P +MR + R R
Sbjct: 122 VASESRKRPEEMRVKTRTR 140

The following BLAST results are available for this feature:

BLAST of Carg25972 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022150.1	1.4e-71	100.00	Serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita argyrosperma su...	[more]
XP_023531530.1	1.4e-68	100.00	serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita pepo subsp. pep...	[more]
XP_022927245.1	1.4e-68	100.00	serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita moschata] >XP_0...	[more]
XP_023006139.1	1.4e-68	100.00	serine/arginine-rich SC35-like splicing factor SCL30A [Cucurbita maxima] >XP_023...	[more]
XP_022153264.1	3.3e-65	96.15	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 [Momordica char...	[more]

BLAST of Carg25972 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU4	1.7e-59	84.50	Serine/arginine-rich SC35-like splicing factor SCL33 OS=Arabidopsis thaliana OX=...	[more]
Q9LHP2	4.8e-59	81.40	Serine/arginine-rich SC35-like splicing factor SCL30A OS=Arabidopsis thaliana OX...	[more]
Q8L3X8	2.7e-30	52.52	Serine/arginine-rich SC35-like splicing factor SCL30 OS=Arabidopsis thaliana OX=...	[more]
Q1PDV2	8.3e-27	52.63	Serine/arginine-rich SC35-like splicing factor SCL28 OS=Arabidopsis thaliana OX=...	[more]
O75494	1.0e-21	51.52	Serine/arginine-rich splicing factor 10 OS=Homo sapiens OX=9606 GN=SRSF10 PE=1 S...	[more]

BLAST of Carg25972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KZE4	6.9e-69	100.00	serine/arginine-rich SC35-like splicing factor SCL30A OS=Cucurbita maxima OX=366...	[more]
A0A6J1EGN8	6.9e-69	100.00	serine/arginine-rich SC35-like splicing factor SCL30A OS=Cucurbita moschata OX=3...	[more]
A0A6J1DIJ4	1.6e-65	96.15	serine/arginine-rich SC35-like splicing factor SCL30A isoform X2 OS=Momordica ch...	[more]
A0A6J1DH06	1.6e-65	96.15	serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 OS=Momordica ch...	[more]
A0A6J1JLK2	7.4e-63	91.60	serine/arginine-rich SC35-like splicing factor SCL33 isoform X1 OS=Cucurbita max...	[more]

BLAST of Carg25972 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55310.1	1.2e-60	84.50	SC35-like splicing factor 33	[more]
AT1G55310.2	1.2e-60	84.50	SC35-like splicing factor 33	[more]
AT3G13570.1	3.4e-60	81.40	SC35-like splicing factor 30A	[more]
AT1G55310.3	5.4e-58	77.30	SC35-like splicing factor 33	[more]
AT3G55460.1	2.0e-31	52.52	SC35-like splicing factor 30	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 38..111 e-value: 2.3E-22 score: 90.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 39..109 e-value: 9.0E-20 score: 70.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 37..115 score: 17.489346
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 33..135 e-value: 6.8E-29 score: 102.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR23147:SF149	SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL30A	coord: 1..132
None	No IPR available	PANTHER	PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	coord: 1..132
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 37..130

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25972-RA	Carg25972-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding