Carg25961 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25961
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr20: 3923411 .. 3926374 (+)
RNA-Seq Expression	Carg25961
Synteny	Carg25961

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAGGCCTCTTCTGGAGCGGATAAATAACTCTCGTCTCTCACCTCCATCACCGATGTCGAAATCTCCGGCGACTTGCAGGTATTTTGAGAGATTGTTCAAATTGAAGAGCTACTAGGCAGGGTTACTTTTTGCTATTCTTGCGATGTTCTGTAGTGCGTAATAGAATTAGGTTTTGTTTTCCTTTTGTGCTCTTTATGCCCTGAAATTGTAGTTACGTTATGGAACTGAGAAAGAATTGAATCCAAGGACTAAAACCTAAAGGGAATGATTGGATATTTACACTGCACCCAAGCGGTTCATTTGTTGAAGATAAGGGATTCTATGGAATTTAGACTTCTTAAATTGCTACACAATTCAATTGCTGGTTGCATCTTGGGCTGTGTTTATACTCTGTTTTAGCCACTGGGAAATGATTAGGAGGCTTCAGAAGCCCATCTGCAAATGCTTGGTTGACATTTTCTTTGAAGCACAAGTGAAATAGTATTCAAAATTTTAGCTTAAGGATTAGACTTTTGGGGAAATATTGAAATTGAAGAGAGTTCTTGAGGAATGCTTGAAAATCAGGAGAAGTATGTTGTACTAGCCCAAGCCCGCCATGGAGAAGTATGTTATAACAACTCAAGCCCACCACTAGCAGATATTTTCTTCTTTGGGATTCTCCTTTCGGGCTTCCCCTTAAGGTTGGAAGTTTCCACACCCTTGTAAGGCCGGTTGAGAATTGTTGGGAGAGGAGTCCTACATCGGCTAAGTAAGGGATTGATCATGGGTTGATAAGTAAGGAGTACATCTCCATTGGTATGAGGCTTTTTGGGGAAGCCAAAAGCAAAGTCACGAGAGCTTATGCTCAAAGTGGACAATATCATACCATTGTGTAGATTCGTGATTCCTAACAAGGCTAACCGATACACCCTTACAAGGAATGTTTCGTTCTCCTTTCCAACCAATGTGGGATCTCACAATCCACCCATCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGCTTTGTTCCCCTCGCCAACCGATGTGGGATCTCACATACGTGCTAGGACGACAATGCTTTTGGAGGAATCTCTGAGAAGTTATGCTGACATCAACCACTGGGTAAACCATTGCTTCTCAATCTGGGACTAATTCTACTGTAGAGACAAATGAAAAAAGTTCATTGATTTCCTTTTTCATAAAGCAACTGATCCTTATCACTTGTGCTTTTGAACTTAAAGTGGCAGCTGCATAAATGGTGGTTATGTTTTTTTTTTTTTATTGATGTTTGAACATTGTGTGAGCTGAGCTGCATATAGCTTAGGACTTTCCTCTTTGTCTTACTATAATTCAAAATATTTCCTTCACTTAGCTTCATATATGGATATGTTAAGTGCAATACAAACTCTTTGGTCTTCTCTGAGCCATGACTGAGATGTTTAGTGGTTTGCTCTTTTTGCTTGACTGTAGTAAGCCTCCTGACTTTCAATCATGCCCAGAAATCAGTTTTCTCGCTCTCCATTGCTTGTCGTCGTCGTCGATGTGAAATGCAACATAGAGATTTTTTCGTAAAAGAGTGAACAATACAATATACCTTTTTATTGTTGTGAAATTTTGAGTACTATGAAGGTCCAACCTTACTTTTGCCATTTAACTCTTCACCTTCTCTGGATTGTCTTAAGTAATAAGGGTCTTAGCTATGCTCACTTTCGTGTCTCTAACCATAAAACTTTAGTGAAAATTTTTTGTTATCTTCGAAGCTCACCGTGGGGTGGGCAAAGTAGCTGAAGATTAGTGAATTTGTGTGTAACAGCCCTAGCCCACTGCTAACAGATATAGTCCGCTTTGGCCCATTACGTATCATTGTCAGCCTCACAGTTTTAAAGCGCATCTGCTAGGGAGATGTTTCCATACCCTTATAAGGACTGCTTCGTTCCCCTCTCCAAATGACGTGAGATCTCACAATTCACCCCCCTTGGGGGCCCAACGTCCTCGTTGGCACACTGCTCAGTGTTTGGTTCTGATATCATTTGTAATAGCCAAAGCCCACCGCTAACATATATTGTCCGCTTTGGCCCATTATGTATCGTCATCAGCCTCACAGTTTTAAAACGTGTCGGTTAGGGAGAGGTTTTCACACTCTTATCAAGAATAGTTTGTTCCCCTCTCTAACTGATGTGGGATCTCACGCATGACCCAATGAGGGGAGGCCTCCCGATTATGAAGAGTACCAATGGGGGAATAGATTTGACTGTTAAATGTACATCACAAAGACTTCTTTTTAAAACTCATCTAGTCACTTCCTTTAGCAATTATCTAAATTTGATGATTCTTTCCTGTACTATTATGGATTCAAACTTTCCCAGGTAATTTCTTTATTGGATCGGATCGGATGAAGGACAAAAAGAAGGATACTAACGATGAAGACTTCGAGCAATCGGAACTGTCCGATGCTCCTGAAGATGACAGGGACTGCAAAGCTGATGATGCTGATGAAGACATTACATATGCTCATCTGTGCTGAGGCATCGGTTCACTTTCGCAAGGTTCGTCATCGTAACGAGTTCAAGCAACAAATTTACTACCTCTGTCCTTGTCCTTAGCTTAGCCTTGATTTTGGATGATATCATTTTGAAGCCTAAATTGTTATTTTCAGAGCAAGAAGGCACCAAAATATCAGAATGATGCTGCTCAAAACATTCTCCACTATACCATCCAGAATCTATGATCATCATCAAAGGTAATATACAGAAATTGCCTATTCTACCCGAAATTAAAATATCGATATCAACAAAAATGTCCCGACAGATACTCGTGTTAGTATTTGTCATGATTTAGATGTCTTATCTCCTCGATCTCGGTATTGAATTGCGTTCGATTCACAAAAGGGTGTTTGTTGAGATGAAATATTGTTCACATCATTGCAACTTGTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTGGTGGAAAAGAGAAGA

mRNA sequence

TGAGGCCTCTTCTGGAGCGGATAAATAACTCTCGTCTCTCACCTCCATCACCGATGTCGAAATCTCCGGCGACTTGCAGGTAATTTCTTTATTGGATCGGATCGGATGAAGGACAAAAAGAAGGATACTAACGATGAAGACTTCGAGCAATCGGAACTGTCCGATGCTCCTGAAGATGACAGGGACTGCAAAGCTGATGATGCTGATGAAGACATTACATATGCTCATCTGTGCTGAGGCATCGGTTCACTTTCGCAAGAGCAAGAAGGCACCAAAATATCAGAATGATGCTGCTCAAAACATTCTCCACTATACCATCCAGAATCTATGATCATCATCAAAGGTAATATACAGAAATTGCCTATTCTACCCGAAATTAAAATATCGATATCAACAAAAATGTCCCGACAGATACTCGTGTTAGTATTTGTCATGATTTAGATGTCTTATCTCCTCGATCTCGGTATTGAATTGCGTTCGATTCACAAAAGGGTGTTTGTTGAGATGAAATATTGTTCACATCATTGCAACTTGTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTTTGGTGGAAAAGAGAAGA

Coding sequence (CDS)

ATGAAGACTTCGAGCAATCGGAACTGTCCGATGCTCCTGAAGATGACAGGGACTGCAAAGCTGATGATGCTGATGAAGACATTACATATGCTCATCTGTGCTGAGGCATCGGTTCACTTTCGCAAGAGCAAGAAGGCACCAAAATATCAGAATGATGCTGCTCAAAACATTCTCCACTATACCATCCAGAATCTATGA

Protein sequence

MKTSSNRNCPMLLKMTGTAKLMMLMKTLHMLICAEASVHFRKSKKAPKYQNDAAQNILHYTIQNL

Homology

[Close]

BLAST of Carg25961 vs. NCBI nr
Match: KAG7010882.1 (hypothetical protein SDJN02_27680 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 129.4 bits (324), Expect = 1.1e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MKTSSNRNCPMLLKMTGTAKLMMLMKTLHMLICAEASVHFRKSKKAPKYQNDAAQNILHY 60
          MKTSSNRNCPMLLKMTGTAKLMMLMKTLHMLICAEASVHFRKSKKAPKYQNDAAQNILHY
Sbjct: 1  MKTSSNRNCPMLLKMTGTAKLMMLMKTLHMLICAEASVHFRKSKKAPKYQNDAAQNILHY 60

Query: 61 TIQNL 66
          TIQNL
Sbjct: 61 TIQNL 65

[Close]

BLAST of Carg25961 vs. NCBI nr
Match: XP_022943919.1 (uncharacterized protein LOC111448497 isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MKTSSNRNCPMLLKMTGTAKLMMLMKTLHMLICAEASVHFRKSKKAPKYQNDAAQNILHY 60
           MKTSSNRNCPMLLKMTGTAKLMMLMKTLH+LICAEASVHFRKSKKAPKYQNDAAQNILHY
Sbjct: 40  MKTSSNRNCPMLLKMTGTAKLMMLMKTLHILICAEASVHFRKSKKAPKYQNDAAQNILHY 99

Query: 61  TIQNL 66
           TIQNL
Sbjct: 100 TIQNL 104

[Close]

BLAST of Carg25961 vs. NCBI nr
Match: XP_022943920.1 (uncharacterized protein LOC111448497 isoform X2 [Cucurbita moschata])

HSP 1 Score: 127.9 bits (320), Expect = 3.2e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MKTSSNRNCPMLLKMTGTAKLMMLMKTLHMLICAEASVHFRKSKKAPKYQNDAAQNILHY 60
          MKTSSNRNCPMLLKMTGTAKLMMLMKTLH+LICAEASVHFRKSKKAPKYQNDAAQNILHY
Sbjct: 35 MKTSSNRNCPMLLKMTGTAKLMMLMKTLHILICAEASVHFRKSKKAPKYQNDAAQNILHY 94

Query: 61 TIQNL 66
          TIQNL
Sbjct: 95 TIQNL 99

[Close]

BLAST of Carg25961 vs. ExPASy TrEMBL
Match: A0A6J1FYD2 (uncharacterized protein LOC111448497 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448497 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MKTSSNRNCPMLLKMTGTAKLMMLMKTLHMLICAEASVHFRKSKKAPKYQNDAAQNILHY 60
          MKTSSNRNCPMLLKMTGTAKLMMLMKTLH+LICAEASVHFRKSKKAPKYQNDAAQNILHY
Sbjct: 35 MKTSSNRNCPMLLKMTGTAKLMMLMKTLHILICAEASVHFRKSKKAPKYQNDAAQNILHY 94

Query: 61 TIQNL 66
          TIQNL
Sbjct: 95 TIQNL 99

[Close]

BLAST of Carg25961 vs. ExPASy TrEMBL
Match: A0A6J1FVL1 (uncharacterized protein LOC111448497 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448497 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.6e-26
Identity = 64/65 (98.46%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MKTSSNRNCPMLLKMTGTAKLMMLMKTLHMLICAEASVHFRKSKKAPKYQNDAAQNILHY 60
           MKTSSNRNCPMLLKMTGTAKLMMLMKTLH+LICAEASVHFRKSKKAPKYQNDAAQNILHY
Sbjct: 40  MKTSSNRNCPMLLKMTGTAKLMMLMKTLHILICAEASVHFRKSKKAPKYQNDAAQNILHY 99

Query: 61  TIQNL 66
           TIQNL
Sbjct: 100 TIQNL 104

The following BLAST results are available for this feature:

BLAST of Carg25961 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010882.1	1.1e-26	100.00	hypothetical protein SDJN02_27680 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022943919.1	3.2e-26	98.46	uncharacterized protein LOC111448497 isoform X1 [Cucurbita moschata]	[more]
XP_022943920.1	3.2e-26	98.46	uncharacterized protein LOC111448497 isoform X2 [Cucurbita moschata]	[more]

BLAST of Carg25961 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FYD2	1.6e-26	98.46	uncharacterized protein LOC111448497 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FVL1	1.6e-26	98.46	uncharacterized protein LOC111448497 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Carg25961 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25961-RA	Carg25961-RA	mRNA