Carg25901 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25901
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr06: 2464042 .. 2465242 (-)
RNA-Seq Expression	Carg25901
Synteny	Carg25901

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCGTGCCATCAAAAACTAAACCTTTTCGCCTTCGCCGCACACAATCCTCTGGCGCTCAGCTGCATCGCCGCCATTGGCTTTTGAGCTCTCTGCCCGATTAAATCCTCCTCCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGTGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGTTTTGTCTATTAATGGTGGTCAGGGGAAATACAAATCAGCTCCCCCCTTTGACTGAAATAAATCGTCATCTGTTTCTATTCTGTTCTATGTATTAATGAATATATGCACATACACCCCTATGAGTACAGTCTAAGAAGAAGAAGAAAAAGAAAAATTGGGATGTAAATGTTCGATGAAAAGTTCCAAAATGAATCTAATCTTTTATCTTCCTTTGGTCGGGGAGAGGGTTTGCAGTGTTGTCGTCTTCTTTTTTATGTACAGTTTTTTGTTTGGTAACTTCTAGTAGGTTTTTTTGGATCCTCGGAATCGAGCTTGGTTGTGGTTTTGATCTTCATAAAAATAGTTTGTTTGATCATGAAGGGGAAATTGCACATCAAAGTCCTCCGATGTGGCTGTGGAACGCCGATTACTGGAGCCGGGCAGAGGAGGGGCACTTGGAAACCACTTCATGGCATTGCTCTTGCTCGAGTCCTTGGTCTTCCTTGGAGGCTTATGGAAGAACGAGGGCAGATCATTTGGACGCGGCGGAGGTGGTGGTGGCGCTGGCGGCGCACTTGGACGTTGGTGACGTTCGTTCCTCTGCAAAATGTCAATTTTCATCTCTAATTAAATGGATTTCGATGCTCCGGCTGGGTTCTATTCCTAATAAGGTTTTTGTAAATGTCTTAAAAGCACAGGAAAATAAGTTCTTTCTTGCTCTCATTAACTGCTAA

mRNA sequence

ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCCTCTCTGCCCGATTAAATCCTCCTCCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGTGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGGGAAATTGCACATCAAAGTCCTCCGATGTGGCTGTGGAACGCCGATTACTGGAGCCGGGCAGAGGAGGGGCACTTGGAAACCACTTCATGGCATTGCTCTTGCTCGAGTCCTTGGTCTTCCTTGGAGGCTTATGGAAGAACGAGGGCAGATCATTTGGACGCGGCGGAGGTGGTGGTGGCGCTGGCGGCGCACTTGGACGTTGGTGACGTTCGTTCCTCTGCAAAATGTCAATTTTCATCTCTAATTAAATGGATTTCGATGCTCCGGCTGGGTTCTATTCCTAATAAGGTTTTTGTAAATGTCTTAAAAGCACAGGAAAATAAGTTCTTTCTTGCTCTCATTAACTGCTAA

Coding sequence (CDS)

ATGGATGACATCTCCGCTCAAAAACCATACCCACCACCGCCGAATCTTCGCCGAAGAAACTCCATCGCGGTGCCCGTCGTCCTCTCTGCCCGATTAAATCCTCCTCCCCACTCCCTTACCTACACTTCTCTCAGAGACATTTTGCCATCTCCGACTTCCATGAGCTCCCCCACCGCCGCCTCTGCAGCGAATTCGGGCTTTGAGATCTCGATCCGCAACCGCCTCGTGAAGCAAGCGGCTTGGGCGTATCTTCAACCCATGTCTTCCTCTCCGGGATCATCAGGACCCCACCTCCTCCGCCGTATCTGGCTCAGATTTTCAGCTTGTCTAGGCTTCCTCAACCTGCACATAATTTCCAGTGTGACAAAGGCTTTGGATCGGATATTTCGCGTTGTGGGGTTCAGGGAAATTGCACATCAAAGTCCTCCGATGTGGCTGTGGAACGCCGATTACTGGAGCCGGGCAGAGGAGGGGCACTTGGAAACCACTTCATGGCATTGCTCTTGCTCGAGTCCTTGGTCTTCCTTGGAGGCTTATGGAAGAACGAGGGCAGATCATTTGGACGCGGCGGAGGTGGTGGTGGCGCTGGCGGCGCACTTGGACGTTGGTGACGTTCGTTCCTCTGCAAAATGTCAATTTTCATCTCTAATTAAATGGATTTCGATGCTCCGGCTGGGTTCTATTCCTAATAAGGTTTTTGTAAATGTCTTAAAAGCACAGGAAAATAAGTTCTTTCTTGCTCTCATTAACTGCTAA

Protein sequence

MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLNPPPHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGFREIAHQSPPMWLWNADYWSRAEEGHLETTSWHCSCSSPWSSLEAYGRTRADHLDAAEVVVALAAHLDVGDVRSSAKCQFSSLIKWISMLRLGSIPNKVFVNVLKAQENKFFLALINC

Homology

[Close]

BLAST of Carg25901 vs. NCBI nr
Match: KAG7028138.1 (hypothetical protein SDJN02_09318, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 507.7 bits (1306), Expect = 5.8e-140
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLNPPPHSLTYTSLRDILPSPTSMSSPTAA 60
           MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLNPPPHSLTYTSLRDILPSPTSMSSPTAA
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLNPPPHSLTYTSLRDILPSPTSMSSPTAA 60

Query: 61  SAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLGFLNLHIISS 120
           SAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLGFLNLHIISS
Sbjct: 61  SAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGPHLLRRIWLRFSACLGFLNLHIISS 120

Query: 121 VTKALDRIFRVVGFREIAHQSPPMWLWNADYWSRAEEGHLETTSWHCSCSSPWSSLEAYG 180
           VTKALDRIFRVVGFREIAHQSPPMWLWNADYWSRAEEGHLETTSWHCSCSSPWSSLEAYG
Sbjct: 121 VTKALDRIFRVVGFREIAHQSPPMWLWNADYWSRAEEGHLETTSWHCSCSSPWSSLEAYG 180

Query: 181 RTRADHLDAAEVVVALAAHLDVGDVRSSAKCQFSSLIKWISMLRLGSIPNKVFVNVLKAQ 240
           RTRADHLDAAEVVVALAAHLDVGDVRSSAKCQFSSLIKWISMLRLGSIPNKVFVNVLKAQ
Sbjct: 181 RTRADHLDAAEVVVALAAHLDVGDVRSSAKCQFSSLIKWISMLRLGSIPNKVFVNVLKAQ 240

Query: 241 ENKFFLALINC 252
           ENKFFLALINC
Sbjct: 241 ENKFFLALINC 251

[Close]

BLAST of Carg25901 vs. NCBI nr
Match: XP_023005655.1 (uncharacterized protein LOC111498593 [Cucurbita maxima])

HSP 1 Score: 238.8 bits (608), Expect = 5.0e-59
Identity = 129/161 (80.12%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN----------------PP--------- 60
           MDDISAQKPYPPPPNLRRRNSIAVPVV+ ++LN                PP         
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFSATKSSGGSAASPPLAFELFPVK 60

Query: 61  --PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
              HSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 135
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 161

[Close]

BLAST of Carg25901 vs. NCBI nr
Match: XP_022957964.1 (uncharacterized protein LOC111459312 [Cucurbita moschata] >KAG6596601.1 hypothetical protein SDJN03_09781, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 238.8 bits (608), Expect = 5.0e-59
Identity = 129/161 (80.12%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN----------------PP--------- 60
           MDDISAQKPYPPPPNLRRRNSIAVPVV+ ++LN                PP         
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60

Query: 61  --PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
              HSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 135
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 161

[Close]

BLAST of Carg25901 vs. NCBI nr
Match: XP_023539526.1 (uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 231.1 bits (588), Expect = 1.1e-56
Identity = 126/161 (78.26%), Postives = 130/161 (80.75%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN----------------PP--------- 60
           MDDISA KP+PPPPNLRRRNSIAVPVV+ ++LN                PP         
Sbjct: 1   MDDISALKPHPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60

Query: 61  --PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
              HSLTYTSLRDILPS TSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSSTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 135
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 161

[Close]

BLAST of Carg25901 vs. NCBI nr
Match: XP_008442897.1 (PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo] >KAA0043832.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa] >TYK25301.1 putative COPII coat assembly protein SEC16 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 1.6e-44
Identity = 109/164 (66.46%), Postives = 116/164 (70.73%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN--------------PP----------- 60
           MD+ SA KP PP  NLRRRNSI VPV + ++LN              PP           
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLLAATKPSRGAEASPPLPLAFELVPIK 60

Query: 61  ------PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
                   SL YTSLRDILPS T+ SSPTAASAANSG+EISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPMSS 120

Query: 121 SPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVG 134
           SPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG
Sbjct: 121 SPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVG 164

[Close]

BLAST of Carg25901 vs. ExPASy TrEMBL
Match: A0A6J1KY03 (uncharacterized protein LOC111498593 OS=Cucurbita maxima OX=3661 GN=LOC111498593 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 129/161 (80.12%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN----------------PP--------- 60
           MDDISAQKPYPPPPNLRRRNSIAVPVV+ ++LN                PP         
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFSATKSSGGSAASPPLAFELFPVK 60

Query: 61  --PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
              HSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 135
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 161

[Close]

BLAST of Carg25901 vs. ExPASy TrEMBL
Match: A0A6J1H3M0 (uncharacterized protein LOC111459312 OS=Cucurbita moschata OX=3662 GN=LOC111459312 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 2.4e-59
Identity = 129/161 (80.12%), Postives = 132/161 (81.99%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN----------------PP--------- 60
           MDDISAQKPYPPPPNLRRRNSIAVPVV+ ++LN                PP         
Sbjct: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVVPSKLNLFAFAATKSSGGSAASPPLAFELFPIK 60

Query: 61  --PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120
              HSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS
Sbjct: 61  SSSHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGS 120

Query: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 135
           SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF
Sbjct: 121 SGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVGF 161

[Close]

BLAST of Carg25901 vs. ExPASy TrEMBL
Match: A0A5A7TKK1 (Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004370 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 7.6e-45
Identity = 109/164 (66.46%), Postives = 116/164 (70.73%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN--------------PP----------- 60
           MD+ SA KP PP  NLRRRNSI VPV + ++LN              PP           
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLLAATKPSRGAEASPPLPLAFELVPIK 60

Query: 61  ------PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
                   SL YTSLRDILPS T+ SSPTAASAANSG+EISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPMSS 120

Query: 121 SPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVG 134
           SPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG
Sbjct: 121 SPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVG 164

[Close]

BLAST of Carg25901 vs. ExPASy TrEMBL
Match: A0A1S3B6B1 (uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 7.6e-45
Identity = 109/164 (66.46%), Postives = 116/164 (70.73%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN--------------PP----------- 60
           MD+ SA KP PP  NLRRRNSI VPV + ++LN              PP           
Sbjct: 1   MDETSALKPDPPFSNLRRRNSITVPVAVPSKLNLLAATKPSRGAEASPPLPLAFELVPIK 60

Query: 61  ------PHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
                   SL YTSLRDILPS T+ SSPTAASAANSG+EISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSSGSSPSLAYTSLRDILPSNTASSSPTAASAANSGYEISIRNRLVKQAAWAYLQPMSS 120

Query: 121 SPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVG 134
           SPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG
Sbjct: 121 SPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVG 164

[Close]

BLAST of Carg25901 vs. ExPASy TrEMBL
Match: A0A0A0LE45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 4.9e-44
Identity = 106/164 (64.63%), Postives = 113/164 (68.90%), Query Frame = 0


Query: 1   MDDISAQKPYPPPPNLRRRNSIAVPVVLSARLN--------------------------- 60
           MDD SA KP  P  NLRRRNSI VPV + ++LN                           
Sbjct: 1   MDDTSALKPDSPFSNLRRRNSITVPVAVPSKLNLLAATKSSRGAEASPRLPLAFELVPIK 60

Query: 61  ----PPPHSLTYTSLRDILPSPTSMSSPTAASAANSGFEISIRNRLVKQAAWAYLQPMSS 120
                   SL YTSL+DILPSPT+ SSPTA SAANSG+EISIRNRLVKQAAWAYLQPMSS
Sbjct: 61  SSSSESSPSLAYTSLKDILPSPTASSSPTAVSAANSGYEISIRNRLVKQAAWAYLQPMSS 120

Query: 121 SPGSSGPHLLRRIWLRFSACLGFLNLHIISSVTKALDRIFRVVG 134
           SPGSSGPHLLRRIWLRFSACL FLNL IISS+T A DRIFRVVG
Sbjct: 121 SPGSSGPHLLRRIWLRFSACLSFLNLPIISSITNAFDRIFRVVG 164

[Close]

BLAST of Carg25901 vs. TAIR 10
Match: AT5G06280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 35  PPHSLTYTSLRDILPSPTSMS----------SPTAASAANSGFEISIRNRLVKQAAWAYL 94
           P   + YTSLRDI+ SP + S          SP  ++AA    +ISIRNRLVKQAA +YL
Sbjct: 51  PSSFVAYTSLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYL 110

Query: 95  QP--MSSSPGSSGPHLLRRIWLRFSACLGFL 114
           QP  ++SS  S+G    RR+WL  SA   FL
Sbjct: 111 QPTVLTSSDDSAGSQFFRRVWLHLSAGFQFL 138

[Close]

BLAST of Carg25901 vs. TAIR 10
Match: AT5G06280.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52520.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-10
Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 0


Query: 35  PPHSLTYTSLRDILPSPTSMS----------SPTAASAANSGFEISIRNRLVKQAAWAYL 94
           P   + YTSLRDI+ SP + S          SP  ++AA    +ISIRNRLVKQAA +YL
Sbjct: 51  PSSFVAYTSLRDIISSPINSSLNLPSINGSCSPVISTAAG---DISIRNRLVKQAALSYL 110

Query: 95  QP--MSSSPGSSGPHLLRRIWLRFSACLGFL 114
           QP  ++SS  S+G    RR+WL  SA   FL
Sbjct: 111 QPTVLTSSDDSAGSQFFRRVWLHLSAGFQFL 138

[Close]

BLAST of Carg25901 vs. TAIR 10
Match: AT3G52520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06280.3); Has 24 Blast hits to 24 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-10
Identity = 45/93 (48.39%), Postives = 59/93 (63.44%), Query Frame = 0


Query: 41  YTSLRDILP-SPTSMSSPT---AASAANSGFEISIRNRLVKQAAWAYLQPMSSSPGSSGP 100
           YTSL+DILP S T++ SP    A ++A SG  I+IRNRLVKQAA +YLQP + +P SS P
Sbjct: 41  YTSLKDILPSSSTTVDSPAISFAVASAVSGPTITIRNRLVKQAACSYLQPSTPTP-SSNP 100

Query: 101 HLLRRIWLRFSACLGFLNLHIISSVTKALDRIF 130
             LRR+   F        + ++S+   AL RIF
Sbjct: 101 SFLRRVSSSF--------IRLVSAFFDALLRIF 124

The following BLAST results are available for this feature:

BLAST of Carg25901 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028138.1	5.8e-140	100.00	hypothetical protein SDJN02_09318, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023005655.1	5.0e-59	80.12	uncharacterized protein LOC111498593 [Cucurbita maxima]	[more]
XP_022957964.1	5.0e-59	80.12	uncharacterized protein LOC111459312 [Cucurbita moschata] >KAG6596601.1 hypothet...	[more]
XP_023539526.1	1.1e-56	78.26	uncharacterized protein LOC111800166 [Cucurbita pepo subsp. pepo]	[more]
XP_008442897.1	1.6e-44	66.46	PREDICTED: uncharacterized protein LOC103486660 [Cucumis melo] >KAA0043832.1 put...	[more]

BLAST of Carg25901 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25901 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KY03	2.4e-59	80.12	uncharacterized protein LOC111498593 OS=Cucurbita maxima OX=3661 GN=LOC111498593...	[more]
A0A6J1H3M0	2.4e-59	80.12	uncharacterized protein LOC111459312 OS=Cucurbita moschata OX=3662 GN=LOC1114593...	[more]
A0A5A7TKK1	7.6e-45	66.46	Putative COPII coat assembly protein SEC16 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A1S3B6B1	7.6e-45	66.46	uncharacterized protein LOC103486660 OS=Cucumis melo OX=3656 GN=LOC103486660 PE=...	[more]
A0A0A0LE45	4.9e-44	64.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778400 PE=4 SV=1	[more]

BLAST of Carg25901 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06280.1	1.2e-10	47.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G06280.3	1.2e-10	47.25	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52520.1	3.5e-10	48.39	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34569:SF2	EXPRESSED PROTEIN	coord: 10..129
None	No IPR available	PANTHER	PTHR34569	EXPRESSED PROTEIN	coord: 10..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25901-RA	Carg25901-RA	mRNA