Carg25896 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25896
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	Carg_Chr06: 2441665 .. 2442027 (+)
RNA-Seq Expression	Carg25896
Synteny	Carg25896

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACGGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCACACTAAGATACTCAAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAAAATGACCCCAAATGCCCGAAATGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCATCTCCGCCGTCCACGGCCGTCGCCCGGAAGATCTAG

mRNA sequence

ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACGGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCACACTAAGATACTCAAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAAAATGACCCCAAATGCCCGAAATGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCATCTCCGCCGTCCACGGCCGTCGCCCGGAAGATCTAG

Coding sequence (CDS)

ATGAGCAGAAGAAGCAATGGAAGTGTTCCAAAGCTCGAATTGAAGCTGAATCTGTCACCACCACGGTCACATTCACTGATGTCATCACCAAGCCGATCGGCGACAGTGTCACCCACATCGCCACCAAGCTCTTGCGTGTCGTTGGAGCTAAACCAAGACGATGGTACCACACTAAGATACTCAAGCAGTCCGGAAGCCACCTCAATGGTGCTGGTGGGGTGCCCTCGCTGTCTTATGTACGTAATGCTGTCGGAAAATGACCCCAAATGCCCGAAATGCAAAAGCTCTGTTTTGCTGGATTTTCTCCATGATGGCGGCGCCACCGCATCTCCGCCGTCCACGGCCGTCGCCCGGAAGATCTAG

Protein sequence

MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI

Homology

[Close]

BLAST of Carg25896 vs. NCBI nr
Match: KAG6596596.1 (Protein salt-induced and EIN3/EIL1-dependent 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028133.1 hypothetical protein SDJN02_09313, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.9 bits (603), Expect = 9.2e-59
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60
           MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY
Sbjct: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI 120
           SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI
Sbjct: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI 120

[Close]

BLAST of Carg25896 vs. NCBI nr
Match: XP_023539011.1 (uncharacterized protein LOC111799770 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60
           MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGT LRY
Sbjct: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI 120
           SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATA PPSTAVARKI
Sbjct: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120

[Close]

BLAST of Carg25896 vs. NCBI nr
Match: XP_022958318.1 (uncharacterized protein LOC111459550 [Cucurbita moschata])

HSP 1 Score: 231.5 bits (589), Expect = 3.8e-57
Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60
           MSRRSNGSVPKLELKLNLSPP+SHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGT LRY
Sbjct: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI 120
           SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATA PPSTAVARKI
Sbjct: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120

[Close]

BLAST of Carg25896 vs. NCBI nr
Match: XP_023005134.1 (uncharacterized protein LOC111498264 [Cucurbita maxima])

HSP 1 Score: 231.1 bits (588), Expect = 5.0e-57
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60
           MSRRSNGSVPKLELKLNLSPPR HSLMSSPSRSATVSPTSPPSSCVSLELNQDDGT LRY
Sbjct: 1   MSRRSNGSVPKLELKLNLSPPRPHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI 120
           SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATA PPSTAVARKI
Sbjct: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120

[Close]

BLAST of Carg25896 vs. NCBI nr
Match: XP_008442891.1 (PREDICTED: uncharacterized protein LOC103486655 [Cucumis melo] >KAA0043838.1 uncharacterized protein E6C27_scaffold236G001730 [Cucumis melo var. makuwa] >TYK04712.1 uncharacterized protein E5676_scaffold23737G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 6.6e-49
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDD-GTTLR 60
           MSRRS+GSVPKLELKLNLSPPR H L+SSPSRSATVSPTSPPSSCVS ELNQDD G  LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARK 120
           YSSSPEATSMVLVGCPRCLMYVMLSEN+PKCPKCKSSVLLDFLHDG A+A PPST  ARK
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASA-PPSTTAARK 120

[Close]

BLAST of Carg25896 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-36
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRS--HSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTL 60
           MSRRS    PKLELKLNLSPP S    ++ SPSRSAT SPTSPPSSCVS E+NQD+  ++
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE-PSV 60

Query: 61  RYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVA 118
           RYS+SPE TSMVLVGCPRCLMYVMLSE+DPKCPKCKS+VLLDFLH+    A+  + A +
Sbjct: 61  RYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAAS 114

[Close]

BLAST of Carg25896 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.2e-26
Identity = 68/119 (57.14%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60
           MSRR N + PKLEL+LNLSPP S +   S  RS   S T+ PSSCVS E NQ++  T+  
Sbjct: 1   MSRR-NKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETI-- 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARK 120
                 TSMVLVGCPRCLMYVMLS++DPKCPKCKS+VLLDFL +    A+  + A  R+
Sbjct: 61  ------TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAANTRR 110

[Close]

BLAST of Carg25896 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-10
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 12  LELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRYSSSPEATSMVL 71
           L+LKLN+SP    SL++  S S+  S  +                        EA SMV+
Sbjct: 11  LDLKLNISPSLDSSLLTESSSSSLCSEEAE-------------------GGGGEAKSMVV 70

Query: 72  VGCPRCLMYVMLS-ENDPKCPKCKSSVLLDFL 103
           VGCP C+MY++ S ENDP+CP+C S VLLDFL
Sbjct: 71  VGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

[Close]

BLAST of Carg25896 vs. ExPASy TrEMBL
Match: A0A6J1H2T2 (uncharacterized protein LOC111459550 OS=Cucurbita moschata OX=3662 GN=LOC111459550 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.9e-57
Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60
           MSRRSNGSVPKLELKLNLSPP+SHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGT LRY
Sbjct: 1   MSRRSNGSVPKLELKLNLSPPQSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI 120
           SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATA PPSTAVARKI
Sbjct: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120

[Close]

BLAST of Carg25896 vs. ExPASy TrEMBL
Match: A0A6J1KYB2 (uncharacterized protein LOC111498264 OS=Cucurbita maxima OX=3661 GN=LOC111498264 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.4e-57
Identity = 117/120 (97.50%), Postives = 117/120 (97.50%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60
           MSRRSNGSVPKLELKLNLSPPR HSLMSSPSRSATVSPTSPPSSCVSLELNQDDGT LRY
Sbjct: 1   MSRRSNGSVPKLELKLNLSPPRPHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTALRY 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARKI 120
           SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATA PPSTAVARKI
Sbjct: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATAPPPSTAVARKI 120

[Close]

BLAST of Carg25896 vs. ExPASy TrEMBL
Match: A0A5A7TLW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold23737G00010 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.2e-49
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDD-GTTLR 60
           MSRRS+GSVPKLELKLNLSPPR H L+SSPSRSATVSPTSPPSSCVS ELNQDD G  LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARK 120
           YSSSPEATSMVLVGCPRCLMYVMLSEN+PKCPKCKSSVLLDFLHDG A+A PPST  ARK
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASA-PPSTTAARK 120

[Close]

BLAST of Carg25896 vs. ExPASy TrEMBL
Match: A0A1S3B7J8 (uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 3.2e-49
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDD-GTTLR 60
           MSRRS+GSVPKLELKLNLSPPR H L+SSPSRSATVSPTSPPSSCVS ELNQDD G  LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARK 120
           YSSSPEATSMVLVGCPRCLMYVMLSEN+PKCPKCKSSVLLDFLHDG A+A PPST  ARK
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASA-PPSTTAARK 120

[Close]

BLAST of Carg25896 vs. ExPASy TrEMBL
Match: A0A0A0LBI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 5.4e-49
Identity = 107/121 (88.43%), Postives = 111/121 (91.74%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDD-GTTLR 60
           MSRRS+GSVPKLELKLNLSPPR H L+SSPSRSATVSPTSPPSSCVS ELNQDD G  LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARK 120
           YSSSPEATSMVLVGCPRCLMYVMLSEN+PKCPKCKSSVLLDFLHDG A+A PPST  ARK
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASA-PPSTTAARK 120

[Close]

BLAST of Carg25896 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 153.7 bits (387), Expect = 9.5e-38
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRS--HSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTL 60
           MSRRS    PKLELKLNLSPP S    ++ SPSRSAT SPTSPPSSCVS E+NQD+  ++
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE-PSV 60

Query: 61  RYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVA 118
           RYS+SPE TSMVLVGCPRCLMYVMLSE+DPKCPKCKS+VLLDFLH+    A+  + A +
Sbjct: 61  RYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAAS 114

[Close]

BLAST of Carg25896 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 118.2 bits (295), Expect = 4.4e-27
Identity = 68/119 (57.14%), Postives = 82/119 (68.91%), Query Frame = 0


Query: 1   MSRRSNGSVPKLELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRY 60
           MSRR N + PKLEL+LNLSPP S +   S  RS   S T+ PSSCVS E NQ++  T+  
Sbjct: 1   MSRR-NKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENETI-- 60

Query: 61  SSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLLDFLHDGGATASPPSTAVARK 120
                 TSMVLVGCPRCLMYVMLS++DPKCPKCKS+VLLDFL +    A+  + A  R+
Sbjct: 61  ------TSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAANTRR 110

[Close]

BLAST of Carg25896 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-11
Identity = 39/92 (42.39%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 12  LELKLNLSPPRSHSLMSSPSRSATVSPTSPPSSCVSLELNQDDGTTLRYSSSPEATSMVL 71
           L+LKLN+SP    SL++  S S+  S  +                        EA SMV+
Sbjct: 11  LDLKLNISPSLDSSLLTESSSSSLCSEEAE-------------------GGGGEAKSMVV 70

Query: 72  VGCPRCLMYVMLS-ENDPKCPKCKSSVLLDFL 103
           VGCP C+MY++ S ENDP+CP+C S VLLDFL
Sbjct: 71  VGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

[Close]

BLAST of Carg25896 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 51.6 bits (122), Expect = 5.1e-07
Identity = 23/48 (47.92%), Postives = 31/48 (64.58%), Query Frame = 0


Query: 52  QDDGTTLRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCPKCKSSVLL 100
           +DDG     +S+  A S V  GCP CL YV +++N+PKCP+C S V L
Sbjct: 198 EDDGVYDGTASATVAASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPL 245

[Close]

BLAST of Carg25896 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 23/70 (32.86%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 32  RSATVSPTSPPSSCVSLELNQDDGTTLRYSSSPEATSMVLVGCPRCLMYVMLSENDPKCP 91
           RS +   +S  +SC++      +     +    EA  MV++GC  C+MYVM+ +   +CP
Sbjct: 30  RSPSSDTSSSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQRCP 89

Query: 92  KCKSSVLLDF 102
           KCK + L+ F
Sbjct: 90  KCKCTDLIFF 99

The following BLAST results are available for this feature:

BLAST of Carg25896 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596596.1	9.2e-59	100.00	Protein salt-induced and EIN3/EIL1-dependent 1, partial [Cucurbita argyrosperma ...	[more]
XP_023539011.1	1.3e-57	98.33	uncharacterized protein LOC111799770 [Cucurbita pepo subsp. pepo]	[more]
XP_022958318.1	3.8e-57	97.50	uncharacterized protein LOC111459550 [Cucurbita moschata]	[more]
XP_023005134.1	5.0e-57	97.50	uncharacterized protein LOC111498264 [Cucurbita maxima]	[more]
XP_008442891.1	6.6e-49	88.43	PREDICTED: uncharacterized protein LOC103486655 [Cucumis melo] >KAA0043838.1 unc...	[more]

BLAST of Carg25896 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	1.3e-36	69.75	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	6.2e-26	57.14	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FMS4	3.7e-10	42.39	Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Carg25896 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H2T2	1.9e-57	97.50	uncharacterized protein LOC111459550 OS=Cucurbita moschata OX=3662 GN=LOC1114595...	[more]
A0A6J1KYB2	2.4e-57	97.50	uncharacterized protein LOC111498264 OS=Cucurbita maxima OX=3661 GN=LOC111498264...	[more]
A0A5A7TLW3	3.2e-49	88.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7J8	3.2e-49	88.43	uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=...	[more]
A0A0A0LBI1	5.4e-49	88.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1	[more]

BLAST of Carg25896 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06270.1	9.5e-38	69.75	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11600.1	4.4e-27	57.14	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G22270.1	2.6e-11	42.39	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16500.1	5.1e-07	47.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52561.1	1.3e-05	32.86	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..49
None	No IPR available	PANTHER	PTHR33177:SF47	BNAC02G02040D PROTEIN	coord: 3..116
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 3..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25896-RA	Carg25896-RA	mRNA