Carg25887 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25887
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	small RNA-binding protein 11, chloroplastic-like
Location	Carg_Chr06: 2401429 .. 2403747 (+)
RNA-Seq Expression	Carg25887
Synteny	Carg25887

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTTCCATATATCTTTACTCGTAGATACAAGGGCATAGTTTCACTCTGCTACTACTACTATTATGGCGGCAATCAGAAAAGCGATGGCGATGTCCTCCGATCGTCGCGTTCTTACCTCTTTATTTCATCCGCCGTCTCGTCTCATCTCTTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGTAAACTCAACATTCCTCCTCTCTATTCTTCTGTTGATTTTTCAGTTCATTATATCCACCTAATGTTGCAGTCTATGTTTCATAATTGAAATTGCAATTTTTGCTGCGAGTTCCTCTGTTTCTGTGAATTGAGATAACTGTGTAGCTTGCACGAGAGACTGTGAATTGTTCAGATGTCTCTGTGATGTTCGTACGTTATGTTTGTAAAATATACTTGTTTTGATCTTACTAATGAAAGTATGGCTGTGTAATCGTGGATTTCTGTATTGATTTACTTCAGGAAACCAAGATCGTGGACAACTATAGAGAAACTTTTTATATTGATACTCATTCCAAAAATTGATATCTGTTCTATATATTATAAAGGATAGACATCTTATGAATACGGATACTTAATATGATTTATCTTTAGCAATTATGCCCAAACTGATTTGCCACTTGCTGTAATCCACACAGCATTCATGATCATTTTGAAGGTATCTACCCAAGCTTTGGAGAAATTGGATATGAAGGGAGTTTTCATTGCTTCTAGACTTTTAGTGGCTTCTCATCTGTAGTATTTTCCAGGCAATTCAAATATGTGTAGGCGCAGACCACCCATCTAGAATCAATTGTTTGTATTCTTTGTATGATCCTTGCTTTTGTTCTTTCATTTATCTTAATGGAATTTCTTTGTATGAACCATGGTCCATTTGCTTAGATCGTTTCATTTTTCAGTCCTGAAGATGGAAGAGAACATGAGAACACCGTTTCTTCCTCGAGCTTCAATTGTTAATTCCTCCTCAAATCTGTAAATTTGTTTCCATAATTTATTGAAAGCTTCAGCATTCACATGCTTGTGTCCTAGAACTTTCTCCATTCTCTTTTGAGTTTGCTACAATTTCTTCAATCTTCATAAACTATTACAGCTTCTTTTCTTCCATGAGCCTGAACTCTCGAAATCTATCTGCAATTGTATTGAAGACATACTTTGATTGCTATTTCTCATTGTACTTGACCACCAAAACTGACCACGCAGCACCGTAAAGCGCTTAGAAGCTTTCTTAAACTCTCATAAGAAGATAACCTAGTGTCCAAGAAGGCACATGCAGCTTTTACAAATCTAGGACGTATAAGGTTCTTTAAGTTCAAAATAATCTGTTGGGGATGTCATTTATGGGTGATCTACACCTAGAGAGACCAAGAATATTCATGTAGCTTAAGCTAAACCTTGATTGTTGTCAAAGGTTAGTGTGTTCTTGTTCTGTTAGATTGCCACATCAACTTGTTCTGTGATGGAATTTCTGGATTTTTAAGGAACTTACCCAATATTTATCCCCCTTTCATTGTTAACCTTTGATCTCTAGTTTCTTTCCGGTTCTGGAAGATTCTCACATGTCACATGGTGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAGCATCCTTTATAAGGGTGTGGACCTCCCTAGCAGACGCGTTTTAAAAACCTTGATGGGAAGCCCGAAAGAAAAAGCTCAAAGAGGACAATATCTGCTAGCGGTAGGCTTGGGCCGTTACACATAGATTAATAGAACTGTTTCCTATTATTGTGAGAAGGAATAGAATCATTTGTCTATACCAATGCCCTTGAAACTTCTGCTATTGAGTTCTTATCAGTCTACTTATTACAACTCCTTATTCCATATGGAAATCCTCTTTCTTGAATATTTTGCTATAGGACTTTCGTTTTACACCTCGGACAAAGGACTGGCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGGTGAATTCCATTCAAATACTTTAGCTTTCATGTCTAACCATGGCAACTTCGTTTCATGGAGCATAACATTTTCTCAATTCCAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTTACCTTTGCGTCTGATGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGGTCTGCACTTTTCTCTATTTCATTACTTTTAATCTTAGAAATCTAAGTCTTATGGTTATTCGTTGCAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGACCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGA

mRNA sequence

ATTTTTCCATATATCTTTACTCGTAGATACAAGGGCATAGTTTCACTCTGCTACTACTACTATTATGGCGGCAATCAGAAAAGCGATGGCGATGTCCTCCGATCGTCGCGTTCTTACCTCTTTATTTCATCCGCCGTCTCGTCTCATCTCTTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTTTCGTTTTACACCTCGGACAAAGGACTGGCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTTACCTTTGCGTCTGATGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGACCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGA

Coding sequence (CDS)

ATGGCGGCAATCAGAAAAGCGATGGCGATGTCCTCCGATCGTCGCGTTCTTACCTCTTTATTTCATCCGCCGTCTCGTCTCATCTCTTTCAGAGGCATAGCTTCGAAGCTTTTTGTTGGAGGACTTTCGTTTTACACCTCGGACAAAGGACTGGCGGAAGCCTTTTCTCAATATGGTCAGGTTGTTGAAGCTAAAGTTGTGATGGACAGAGTATCTGATAAGTCAAAGGGATTCGGATTCGTTACCTTTGCGTCTGATGACGAAGCTCATACAGCTCTGACCGAGATGAACGGAAAGTCTTTGAACGGAAGGGTTATTTTCGTGGACTATGCAAAACCGACGACCAATTTTCGTGGTGGAATTCCGATAGCGAGAGGACCTCCTGAGGAGAAAACTGATGAATGA

Protein sequence

MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGPPEEKTDE

Homology

[Close]

BLAST of Carg25887 vs. NCBI nr
Match: KAG7028125.1 (Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 265.0 bits (676), Expect = 3.5e-67
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Carg25887 vs. NCBI nr
Match: XP_022933740.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 260.0 bits (663), Expect = 1.1e-65
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Carg25887 vs. NCBI nr
Match: XP_023538908.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 258.5 bits (659), Expect = 3.3e-65
Identity = 130/134 (97.01%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMA+SSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAISSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Carg25887 vs. NCBI nr
Match: KAG6596588.1 (Small RNA-binding protein 11, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 0


Query: 8   MAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVV 67
           MAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVV
Sbjct: 1   MAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVV 60

Query: 68  MDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGP 127
           MDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGP
Sbjct: 61  MDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGGIPIARGP 120

Query: 128 PEEKTDE 135
           PEEKTDE
Sbjct: 121 PEEKTDE 127

[Close]

BLAST of Carg25887 vs. NCBI nr
Match: XP_023005174.1 (small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 246.9 bits (629), Expect = 9.9e-62
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMA+SS+R VL S+F PPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Carg25887 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.6e-33
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAH 90
           RG+ASKLF+GGLSF T+++GL+EAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKSLNGRVIFVDYAKPTTNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of Carg25887 vs. ExPASy Swiss-Prot
Match: Q9LIS2 (Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG4 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.7e-19
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 25  SRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SDDEAHTALTEMNGKSLNGRVIFVDYA-----KPTTNFRGG 121
            +D A+ A+ EM+GK LNGR I V+ A      P ++F GG
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGG 125

[Close]

BLAST of Carg25887 vs. ExPASy Swiss-Prot
Match: Q28IQ9 (Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.1e-18
Identity = 49/96 (51.04%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 36  KLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTE 95
           KLFVGGL+F T+++ L + FS+YGQV E  VV DR S +S+GFGFVTF + ++A  A+  
Sbjct: 7   KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66

Query: 96  MNGKSLNGRVIFVDYAKPTTN-----FRGGIPIARG 127
           MNGKS++GR I VD A  ++N     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSNDRRGGYRGGSSGGRG 102

[Close]

BLAST of Carg25887 vs. ExPASy Swiss-Prot
Match: P60826 (Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-18
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 36  KLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTE 95
           KLFVGGLSF T+++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF + D+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKSLNGRVIFVDYAKPTTN-----FRGGIPIARG 127
           MNGKS++GR I VD A  +++     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG 102

[Close]

BLAST of Carg25887 vs. ExPASy Swiss-Prot
Match: Q14011 (Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 5.3e-18
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0


Query: 36  KLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTE 95
           KLFVGGLSF T+++ L + FS+YGQ+ E  VV DR + +S+GFGFVTF + D+A  A+  
Sbjct: 7   KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66

Query: 96  MNGKSLNGRVIFVDYAKPTTN-----FRGGIPIARG 127
           MNGKS++GR I VD A  +++     +RGG    RG
Sbjct: 67  MNGKSVDGRQIRVDQAGKSSDNRSRGYRGGSAGGRG 102

[Close]

BLAST of Carg25887 vs. ExPASy TrEMBL
Match: A0A6J1F5P0 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441037 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.5e-66
Identity = 131/134 (97.76%), Postives = 133/134 (99.25%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVV DRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG
Sbjct: 61  VVEAKVVTDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Carg25887 vs. ExPASy TrEMBL
Match: A0A6J1KYF3 (small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111498283 PE=4 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 4.8e-62
Identity = 125/134 (93.28%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           MAAIRKAMA+SS+R VL S+F PPSRLISFRGIASKLFVGGLSFYTSDKGL+EAFSQYGQ
Sbjct: 1   MAAIRKAMAISSNRCVLPSVFTPPSRLISFRGIASKLFVGGLSFYTSDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           VVEAKVVMDRVSDKSKGFGFVTFAS+DEAHTALTEMNGKSLNGRVIFVDYAKPT+NFRGG
Sbjct: 61  VVEAKVVMDRVSDKSKGFGFVTFASEDEAHTALTEMNGKSLNGRVIFVDYAKPTSNFRGG 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTDE
Sbjct: 121 IPIARGPPEEKTDE 134

[Close]

BLAST of Carg25887 vs. ExPASy TrEMBL
Match: A0A5A7TKK4 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004160 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.7e-56
Identity = 113/134 (84.33%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           M AIRKA+A+SS+RRVL SLF PPSRL+SFRGIA+KLFVGGLS+YT+DKGL+EAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPTT+ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of Carg25887 vs. ExPASy TrEMBL
Match: A0A1S3B7I3 (glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486638 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 6.7e-56
Identity = 113/134 (84.33%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           M AIRKA+A+SS+RRVL SLF PPSRL+SFRGIA+KLFVGGLS+YT+DKGL+EAFSQYGQ
Sbjct: 1   MEAIRKAIAISSNRRVLPSLFPPPSRLVSFRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPTT+ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASIDEAHTALSEMNGKPLNGRVIFVNYAKPTTSTRGS 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of Carg25887 vs. ExPASy TrEMBL
Match: A0A0A0LE31 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.5e-55
Identity = 112/134 (83.58%), Postives = 126/134 (94.03%), Query Frame = 0


Query: 1   MAAIRKAMAMSSDRRVLTSLFHPPSRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQ 60
           M AIRKAMA++S+RRVL SLF PPSRL+S+RGIA+KLFVGGLS+YT+DKGL+EAFSQYGQ
Sbjct: 1   MEAIRKAMAITSNRRVLPSLFPPPSRLVSYRGIATKLFVGGLSYYTTDKGLSEAFSQYGQ 60

Query: 61  VVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTEMNGKSLNGRVIFVDYAKPTTNFRGG 120
           V+EA VVMDRVSDKSKGFGFVTFAS DEAHTAL+EMNGK LNGRVIFV+YAKPTT+ RG 
Sbjct: 61  VIEATVVMDRVSDKSKGFGFVTFASLDEAHTALSEMNGKPLNGRVIFVNYAKPTTSSRGA 120

Query: 121 IPIARGPPEEKTDE 135
           IPIARGPPEEKTD+
Sbjct: 121 IPIARGPPEEKTDK 134

[Close]

BLAST of Carg25887 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 142.9 bits (359), Expect = 1.9e-34
Identity = 71/101 (70.30%), Postives = 84/101 (83.17%), Query Frame = 0


Query: 31  RGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAH 90
           RG+ASKLF+GGLSF T+++GL+EAFS+ GQVVEA++VMDRVSD+SKGFGFVTFAS DEA 
Sbjct: 30  RGVASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQ 89

Query: 91  TALTEMNGKSLNGRVIFVDYAKPTTNF--RGGIPIARGPPE 130
            AL E NG+ LNGR IFVDYAK   +    GG PIARGPP+
Sbjct: 90  KALMEFNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPD 130

[Close]

BLAST of Carg25887 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-20
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 25  SRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SDDEAHTALTEMNGKSLNGRVIFVDYA-----KPTTNFRGG 121
            +D A+ A+ EM+GK LNGR I V+ A      P ++F GG
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGG 125

[Close]

BLAST of Carg25887 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 95.9 bits (237), Expect = 2.6e-20
Identity = 50/101 (49.50%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 25  SRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R ++SKLFVGGLS+ T D  L +AF+ +G+V EA V+ DR + +S+GFGFV+F+
Sbjct: 25  SMLGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFS 84

Query: 85  SDDEAHTALTEMNGKSLNGRVIFVDYA-----KPTTNFRGG 121
            +D A+ A+ EM+GK LNGR I V+ A      P ++F GG
Sbjct: 85  CEDSANNAIKEMDGKELNGRQIRVNLATERSSAPRSSFGGG 125

[Close]

BLAST of Carg25887 vs. TAIR 10
Match: AT3G20930.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-19
Identity = 44/83 (53.01%), Postives = 62/83 (74.70%), Query Frame = 0


Query: 36  KLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFASDDEAHTALTE 95
           KLF+ GLSFYTS+K L  AF  +G++VE K++MD++S +SKG+ F+ + +++ A TAL E
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKE 342

Query: 96  MNGKSLNGRVIFVDYAKPTTNFR 119
           MNGK +NG +I VD AK T  FR
Sbjct: 343 MNGKIINGWMIVVDVAK-TKPFR 364

[Close]

BLAST of Carg25887 vs. TAIR 10
Match: AT4G13850.4 (glycine-rich RNA-binding protein 2 )

HSP 1 Score: 90.9 bits (224), Expect = 8.4e-19
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 0


Query: 25  SRLISFRGIASKLFVGGLSFYTSDKGLAEAFSQYGQVVEAKVVMDRVSDKSKGFGFVTFA 84
           S L S R +++KLF+GGLS+ T D  L +AF+ +G VV+AKV++DR + +S+GFGFV F 
Sbjct: 25  SMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFN 84

Query: 85  SDDEAHTALTEMNGKSLNGRVIFVDYA--KPTTNFRGG 121
            +  A  A++EM+GK LNGR I V+ A  +P+  + GG
Sbjct: 85  DEGAATAAISEMDGKELNGRHIRVNPANDRPSGGYGGG 122

The following BLAST results are available for this feature:

BLAST of Carg25887 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028125.1	3.5e-67	100.00	Small RNA-binding protein 11, chloroplastic [Cucurbita argyrosperma subsp. argyr...	[more]
XP_022933740.1	1.1e-65	97.76	small RNA-binding protein 11, chloroplastic-like [Cucurbita moschata]	[more]
XP_023538908.1	3.3e-65	97.01	small RNA-binding protein 11, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]
KAG6596588.1	1.1e-63	100.00	Small RNA-binding protein 11, chloroplastic, partial [Cucurbita argyrosperma sub...	[more]
XP_023005174.1	9.9e-62	93.28	small RNA-binding protein 11, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of Carg25887 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FFZ6	2.6e-33	70.30	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9LIS2	3.7e-19	49.50	Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q28IQ9	1.1e-18	51.04	Cold-inducible RNA-binding protein OS=Xenopus tropicalis OX=8364 GN=cirbp PE=2 S...	[more]
P60826	5.3e-18	50.00	Cold-inducible RNA-binding protein OS=Cricetulus griseus OX=10029 GN=CIRBP PE=2 ...	[more]
Q14011	5.3e-18	50.00	Cold-inducible RNA-binding protein OS=Homo sapiens OX=9606 GN=CIRBP PE=1 SV=1	[more]

BLAST of Carg25887 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F5P0	5.5e-66	97.76	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1KYF3	4.8e-62	93.28	small RNA-binding protein 11, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7TKK4	6.7e-56	84.33	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B7I3	6.7e-56	84.33	glycine-rich RNA-binding protein 4, mitochondrial isoform X1 OS=Cucumis melo OX=...	[more]
A0A0A0LE31	1.5e-55	83.58	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G777670 PE=4 SV...	[more]

BLAST of Carg25887 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06210.1	1.9e-34	70.30	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G23830.1	2.6e-20	49.50	glycine-rich RNA-binding protein 4	[more]
AT3G23830.2	2.6e-20	49.50	glycine-rich RNA-binding protein 4	[more]
AT3G20930.1	3.8e-19	53.01	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G13850.4	8.4e-19	47.96	glycine-rich RNA-binding protein 2	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 36..109 e-value: 1.2E-26 score: 104.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 37..106 e-value: 5.7E-21 score: 74.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 35..113 score: 20.66165
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 32..131 e-value: 6.1E-29 score: 102.9
None	No IPR available	PANTHER	PTHR15241:SF335	GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL-LIKE	coord: 1..133
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..133
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 36..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25887-RA	Carg25887-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:1901002	positive regulation of response to salt stress
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding