Carg25870 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25870
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 4789450 .. 4789823 (+)
RNA-Seq ExpressionCarg25870
SyntenyCarg25870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTACGGATGATGACGTTGCGGTCTGGTTTTGTGTCTTAGGGTTTCTTTCTTAACGTGCACTGTCATTTCGGATATCACTTTCAAGAGGCCGTTAACTGGTGCCAGTTTCAATCTGGAGAATTTTATTACTAACCAATTTAAATATACATATTGGCGTTCTTTGTGACCGTGCTGATCTTTGTTTGCTATGTTGCGACTTCTCAGATCACTCGCATTCTACAGTTTTAACGCTGGCGGTGATCTTTCCGGCCTAAACAAACAGCACAGCAATGGCGAATTTAGCAATGATGGGTATCCTCGAGAAGGTACTCTGTTACCGGATTGTATGAGCTGCTATAGTCTTATATCTATTACCTTTTTTCTTCACTGA

mRNA sequence

ATGCGTACGGATGATGACGTTGCGGTCTGGTTTTGTGTCTTAGGATCACTCGCATTCTACAGTTTTAACGCTGGCGGTGATCTTTCCGGCCTAAACAAACAGCACAGCAATGGCGAATTTAGCAATGATGGGTATCCTCGAGAAGGTACTCTGTTACCGGATTGTATGAGCTGCTATAGTCTTATATCTATTACCTTTTTTCTTCACTGA

Coding sequence (CDS)

ATGCGTACGGATGATGACGTTGCGGTCTGGTTTTGTGTCTTAGGATCACTCGCATTCTACAGTTTTAACGCTGGCGGTGATCTTTCCGGCCTAAACAAACAGCACAGCAATGGCGAATTTAGCAATGATGGGTATCCTCGAGAAGGTACTCTGTTACCGGATTGTATGAGCTGCTATAGTCTTATATCTATTACCTTTTTTCTTCACTGA

Protein sequence

MRTDDDVAVWFCVLGSLAFYSFNAGGDLSGLNKQHSNGEFSNDGYPREGTLLPDCMSCYSLISITFFLH
Homology
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BLAST of Carg25870 vs. NCBI nr
Match: KAG7031341.1 (hypothetical protein SDJN02_05381, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 3.8e-33
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MRTDDDVAVWFCVLGSLAFYSFNAGGDLSGLNKQHSNGEFSNDGYPREGTLLPDCMSCYS 60
          MRTDDDVAVWFCVLGSLAFYSFNAGGDLSGLNKQHSNGEFSNDGYPREGTLLPDCMSCYS
Sbjct: 1  MRTDDDVAVWFCVLGSLAFYSFNAGGDLSGLNKQHSNGEFSNDGYPREGTLLPDCMSCYS 60

Query: 61 LISITFFLH 70
          LISITFFLH
Sbjct: 61 LISITFFLH 69

The following BLAST results are available for this feature:
BLAST of Carg25870 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031341.13.8e-33100.00hypothetical protein SDJN02_05381, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25870 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25870-RACarg25870-RAmRNA