Carg25868 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25868
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr04: 4769655 .. 4778881 (-)
RNA-Seq ExpressionCarg25868
SyntenyCarg25868
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATAAAAATTTCAGATGGAAGTGGAGGGAATAGATGGATATAATAAAGTTGAGGTCATTCTACGAGGAATCCAACTCCGGTTGCTACTTTAAACACTCCAATCACGTAAGAAATTTTCTATTTGACGTCATGAACTACATATATGCGGCTTAGTTCTTACCGGAGTTGCATCTTTCTTCTTCTTCTTCTTATTATTATTATTATTATTTATGTTCCTTGTGCTATTGATATTATGTTTTTGTTTAAAGAGTAAATGATTAAACTACAATAAATGATTGTAATGAATGTTAAAGAAAAAAGAAAAGCCCAATTTACCTAAAAGATGCTCCAATCAAACAAAATAAGACTAAAAGGGTAATTACAAAAAATTGCACATGCCCTCCCATACAAAGGTGTGATCCAATAAGGCTACACCTCACCCCAAGCTTTTCCCATCCCTTTAAAAATCGTAATGTTCCTTTCAACCAAAGAAAATCCCTTTCAAAATCCGAAAAACGATGAAAAATAAGCTCTTTCACCATGGAACTACAACCCGTAGATTGGGCAAGACCATAGGAGAGATAGATCTAGTTGATATCTTTACTCAAAGTGGAAAAAGATATCTCTACTCAAAGTGGAAAAAAAATCCTCTAGTGTGTGGTAAATGGAGGACTACATGTTATTGGAAAGCAAACAATTGTTGGAATTGGAAAGCAAAAAATTGTTGAGTAAGTTGTCATATGCCATAGGTAAGAAAGAATTTGAATCAAAGACAATTGTGTAGGAATCAAGGAATAAAGGGATCACAAGAAGAGGTTTGTGAAAACAAGGGAAACACTATAATAACAGAACTAAGAACCGAAGAATAAAACCTAAGGACCTAAGTTTTCCGAACAAGAATAAAAACATGACAAGAAATGAGTATGGTACCCTAACATCTACCAAAGACACGATTAATAGCCGTCAAGTAGGCTATTTATTGAGCCTTTGTACTCATTCTAGTTCTTGCATGTTTATCACATGTGACCAGAAGGAGTTGATCAAGGATGGAAGTGGTCCTAGTGCAGGTGCCATAGAGAACCACATTGAGTTTTCAACTCTTGAATGTTTTAAGTTGTTTTGTTTATTGGGCCCAATGTATTAGACTCATAAAATTTATTTGGAAGAAAATGTATTTTATGTTTTTGTTTTCAAACGCGAAATTTTTTACCGTCTTTTGTCTTTCCAAATTTTTACATAGTCGCGACTTGTGAAATTTTGGTCGTGAGAGAGTGGTATCAAAGAAAATGTTCTCTATGGCCCCGCTCGAAAGACGCTCCGCCGTGACCATGTATGAATACTTTCAAGACTTTCGGATAAGAATGCCTAAGGATTTTGGGAGCTAGGTTAACTTTAGGGTTGTTCCACCAAGGTGGAAGAACTAAGACTATAGACGGTCAGAAACAGTCTTTACAAGGCCAAGTATAGTTACGAGGGTTAAGGAACCTCGTAACACCAAGGTGAGAAGCACTTTAGACCATAAGAGAACCCACCAATAAGACTCGTACAAAAAGGAACAAGGTTGATTATGTCAAAGTTAATTGGGCACGAGGAAGAAAATATGCTCCAAGAGAGAAGGAAATACGAGGATGACCAATAAGACTCGTACAAAAATTGGGCACGAGGAAGAAAATATGCACCAATAAGACTCGTACAAAAAGGAACAAGGTTGATTATGTCAAAGTTAATTGGGCACGAGGAAGAAATTATGCTCCAAGAGAGAAGGAAATACGAGGATGACCAAGAAAAACATGTAATTTCAATAAAACATTTTAAGAAGATTGTTGAGAATAACGAATGTCGTAATAAGTAGATGACCTCATGACATTAGTTGAGGACAAAAGGCCTTGGACAAACCCATCCAAGGACTCTCAAGGAACTTTGAAGGACATAACTAAGACCAAGTACTCCCCAAGTCATGGTAAGAACGGTGAACTTTTGGGGAGAATTTGTAAGAGCTCAAGTTGGATTAAGATACTCGGGTAAGTTTAAGGTGACCAAGAAAGGTTTAAGAGATCCAACGGAAAGAAAGAAAAATAAGTTTGGATATGAGAATTGTTGGTTAAAGTATGAGATTCGGCTCCCAACATTTTGGTAATGGACAATCTTTCGATTTTTTTTTTTGTTTAATTGTTATGTGTGAAAGGAGATATGAATGGTATTAGTTGAGGACAAAAGGCCACAAGGGCAAATTATAAGGACATGATGGAGAAGGACAAACCTATCCAAGAACCCTGAAGGAACTTAGAAGGACATAACTAAGACCAAGTACTCCCCGAGTCATGGTAAGAATGTGAACTTTTGGGGAGAATTTGTAAGAGATCAAGTTGGATTAAGATACTCGAATAAGTCTAAGGTGCCCAAGAAAGGTTTAATAGATCCAAAGAAAGGAAGAAAAATAAGTTTAGATACGAGAATTGTGGGTAGTATGAGATTGGGCTCCCAACGTTTTGATAATGGACAATCTATCGAATTTATTTTAGTTTAATTGTTATGTATGAAAGTGGTATTAGTTGAGGACAAAAGGCCACAAGGGCAAATTATAAGGACATGGTGGAGAAGGACAAACCCATCCAAGGACCCTTAAGGAACTTAGAAGGACATAACTAAGACTGAGTACTTCCCCGAGTCATGGTAAGAACTGTGAGCTTTTGGGGAGAGTTTGTAAGAGGTCAAGTTGGATTAAGATACTCGAATAAGTTGAAGGTGCCCAAGAAAGGTTTAAGAGATCCAAAGAAAGGAAGAAAAATGTTTGGTTTAAGATTGAGCTCTCAACATTTTGATAATGGACACTATTTCGAACTTTTTTCCGTTTAATTGTTATGTATGAAAGGACGGACGAATGGTATTAGTTGAGGACAAAAGGCCACAAAGGCAAATTGTAAGGACATGATGGACAAGGATAAACCCATCCAACGACCGTCAAGTAACTTGTAAGGACATAACTAGGGCCAAGTACTCCCCCAAGTCATGGTAAAAACGGTGAACTTTTGGGGAGAATGTAAGAGCACAAGTTGTTTTATTATACTCGAGTAAGTTTAAGAAGCACAAAAAAGGTTTAAGAGATCCAAAGAAAGGAAGAAAAATAAGTTTGGATACTAGAATTGTCGGTTCAAGTATGAGATTAGGCTCCCAACGTTTTGATAATGGACAATGTATCGAATTTTTTTCAGTTTAATTGTTATGTATGAAAGGACAGATGAATGGTATTAGTTGAGGACAAAAGGCCACAAGGGAAAATTATAAGGACATGATGGAGAAGGACAAACCCATCCAAGGACCCTCAAGGAACTTAGAAGGACATTAACTAAGACCAAATTCTTCCCCGAGTCATGGTAAGAATGGTGAACTTTTGGGGAGAATTTGTGAAAGCTCAAGTATGATTAAGATACTCGAGTAAGTTTAGGGTACCGAAGAAAAGTTTAAGAGATCCAAAGAAAGGAAGAAAAATAAGTTTGGATACGAGAATTGTGGGTTCAAGTATTTATTGTAGTTTAATTGTTATGTATGATAGGACGGTTGAATGGTATTAGTTGAGGACAAAAGGTCACAAGGGCAAATTATAAGGACATGATGGAGAAGGACAAACCCATCCAAGGACCTTGAAGGAACATAGAAGGACATAACTAAGACCAAGTATTCCCCCAAGTCTCGGTAAAAACAGTGAACTTTTGGGGAGTAAGTTTAAGAAGCCAAGAAAGGTTTAAGAGATCCAAAGAAATGAAGAAAAATAAGTTCGGATAGGAGAATAATTGTGGGTTAGTATGTGATTGGCTCCCAACATATTGTTGATGGACAATCTTTCAATTTTTTTTAGTTTAATTGTTATGTATGAAAGGACGGATGAATTGTATTAGTTGAGGACAAAAGGCCACAAGGGCAAATTATAAGGACATGATGGAGAAAGACAAACCCCCCATCCAAGGACTCTCAAGGAACTTAGAAGGACATAACTAAGACCAAGTACTCCCCGAGTCATGGTAAGAATGTGAACTTTTGGATAGAATTTGTAAGAGCTCAAATTGGATTAAGATACTCGAATAAGTTTAAGGTGCTCAAGAAAGGTTTAAGAGATCCAAAGAAAGGAAGAAAAATAAGTTTGGATACGAGAATGGTGAGTTAAAGTATGAAATTGGGCTCTCAGCAATTTGATAATGGAGCATATATTAAATTTTTTATCGAATTTTCTTAGTTTAATTGTTATGTATGAAAGGATGGACGAATGTTATTAGTTGAGGACAAAAGGCCACAAGGGCAAAATTTTAGGACATGATGGAGAAGGATAAACCCATCCAAGGTCCCTCAAGTAACGTAGAAGGACATAACTAAGACCAAGTACTCAAAATTTTAGGACATAACTCGAATAAGTTTAAGGTGCTCAAGAAAGGTTTAAGAGATCCAAAGAAAGGAAGAAAAATAAGTTTGGATACGAGAATGGTGGGTTAAAGTATGAAATTGGGCTCTCAGCAATTTGATAATGGACCATATATTAAATTTTTTATCGAATTTTCTTAGTTTAATTGTTATGTATGAAAAGATGGACGAATGTTATTAGTTAAGGACAAAGGGCCACAACGGCAAAATTTTAGGACATGATGGAGAAGGATAAACCCATCCAAGGTCCCTCAAGTAACGTAGAAGGACAGAACTAAGACCAAGTACTCCCCCAAGTCATGGTAAAAACGGTGAACTTTTGGGGAGAATTTATAAGAGCTCAAGTTAGATTAAGATACTCGGGTAAGTTTTTAAGGTGTCCAAGAAAGATTTAAGAGATCTAAAGAAAGGAAGAAAAATAAGTTTGATACGAGATTGAGATCCCTAACAGTTTGATAAAGAAACTATTTGGAACTTTTTTTAGTTTAATTGTTTTGTATGAAAGGACGAATGGTATTAGTTGAGGTCAAAAGGCCACAATGGCAAATTGTAAGGACATGATAGCAAATTATAAGGACTGGACGAAGAAGGCCAAACCCATCCAAGGACCCTCCAGAAATTTAGGAGGACATAACTAAGACTAAGTACTCCCGAAAGGCATGGTAAGAACAATGAACTTTTGGGAAGATTTTGTTAGATCCCAAGTTAGATTAAGATACTTGGGTAAGTTTAAGATGCCCAAGAAAGGTTTAAGGGATCCAAAGAAAGGAAGATAAGTTTAGATAAGCCTTGTACAAAAAGGAACATGAGAAGCCTCAAAGATACAACCTTAAAGGAACAAGGTTGATTATGTCAAAGCTTGTTGGGTACAAGGAAGGAAATATGCTCTAAGATATGAGGAAACAAAAGGACGGCCAAGAAAGACATGCAATCTCAACAAAAGATGTTACGATGACCGTGAAAAAGAACCAAGTGTCGGAATAAGTATATAACCTCAAGGCATAAGTTAAGTACAAAAGGCCACAAGGGGCCAGGATAGCAAATTAATAAGGACATGACGAAGAAGGACAAACCCATCCAAAGACCTTCGAGAAACTTAGGAGGACATAACTAAGACTAAGTACTCTCCCAAGGCATGGTAAGAACAATGAACTTCTGTAAAGATTTTCTTAGAGCCCAAGTAAGATTAAGATACTTGGGTTAGTTTAAGATGCCCAAGAAAGGTTTAAAGGATCTAAAGAAAGGAAGTAAGATAAGTTTAGACAAGCCTCGTTTAAAAAGGAACAAGAGAAGCCAAAAAGATACAACCTTAAAGGAACAATGTTGATTATGTCAAAGCTTGTTGGTTACAAGGAAAGAAATATGCTCCAAGATATAAGGAAACAAAAGGATGACTAAGAAAGACTTGTAATCTCAACAAAGGATGTTACGGCAGACAATCAAGAAGAACAAATGCCGGAATAAGTACATAAGCTCAAGGCATAAGTTAAGGACAAAAGGCCACAAGGGGCCACGAGGGCAAATTATAAGGACATGACGAAGAAAGGACAAACCCATCCAAGGACTAGAAACTTAGGAGGATATTACTAAAACTAAGTATTCCCCCGAGGCATGGTAAGAACAATGAACTTTTTGGAACATTTTGTTAGAACCCAATTAAGATTAAGATACTTGGGTAAGTTTAAGACACCCAAGAAAGGCTTAAGGGATCCAAAGAAAGGAAGGAAGATAAGTTTGGATAAGCCTTGTACAAAAATGAACAAGAGAAGCCTCGAAGATACAATCTAAAAGAATAAGGTTGATTATGTCAAAGCTTGTTGGGTACAATTTTCTCCAAGATATAAGGAAACAAAAGGATGACCAAGAAAGACTTGTAATCTCAACAAAAGATGTTACAATGACAATCAAGACGAACAAATGCCGGAATAAGTACATAACCTCAAGGCATAAGTTAAGGACAAAAGGCCATAAGGGGTTTAAGAGGACATAACTAAGAGTAAGTATTCATCCAAGGCATGGTAAGAACAATGAACTTTTGGGGAGATTTTGTTAGACAAAAGGCCATAAGGGGCCACAAGGGAAAATTATAAGGACTTGACGGAGAAGGACAAACCCATCTAAGGACCCTCAAGAAGTTTAAGAGGACATAACTAAGAGTAAGTATTCCTCCAAGGCATGGTAAGAACAATGAACTTTTGGGGAGATTTTGTTAGAGCCCAAGTAAGATTAAGATACTTGGATAAGTTTAAGATGCCCAAGAAAGGTTTAAGGGATCCAAATAAAGAAAGAAAGGAAGATAAGTTTGGATACGTGAATTGTGTGTTGAAGTATGAGATTGAGCTCCCAACGTTTTGAATTATTTCTTCTCATTCTTTGTAACAAAAATAATTATTGAGGTAGTATTGTCTAATAAGGTTTTATTCGGGATGAGAGAATAAAGTGTTATAAAAAATAGGGTACTTCATTGAACGGTCTATGGGTTTTCTTGAAGAACTAAATAAGATGATATCCTTACTTAAAGTAAAAAAAATCCACTTGGTGTGGTAAATGGAGGACTATATGTTCGAATAGACAATTGGAAAACGAAAAATTGTTGGAATCAAGGAATAAATTTTTCATGTCATAAGTACGAAAGAATTTGAATCAAGGACAATTGAAAAGCAAAGAATAGTAGGAATAGAGGAATAAGGAATCACAAAAAGAGGTTTGTAAAATTTTAAAGAAAGGAAGCATTAGGATAAAAGAATTTGTTTAATTCGTGGTATAGAAAAGTTAAATTGTATTTAGATATAAGCTAGATAATGGATAATCTTTTGTGTTCTTTTAGTATAACGGTTATGTATGAAAGTACGGTAGAAAGGTAAGTTTGAATACGAAGTGTGAGATTGGAATTCAACTTTTGAAGTGCAAGTTAGATAACGACTTTTCGATTTTTTTTTTTGGAGTTGGCTAATTATGTAAGTAAGGAAAGAAAATAAGTTTAGAAACGAGAATGGTGGGTTAAAGAATGAGATTGGACTCCCAACTTTTTGATAATGGACAATCTTTTGATTTTTGTAAGTTCAATGGTTTTATATGAAAAGATGGAAGAAAGATAAGTTCGGATACAAGAATTTTAGTTTAAAGTTTAAGATTGGACTTCAAATTTTGATAGATGATTTTTTTTGCCATAATTTGGATAAAAAATAACGTTTGAGGTTGTATAGTCTATTAAGGTTTAATTTGGACAAGTGAATAAAGTATTATAATGATGAAATAAGGTACTTTTTAGAACGGTCTATTGGTTTCTTTGAAGAATTCAACGTGATGATGAATAAATTATTATGATGACGAAATAAGGTGCTTTCTTAAAACGGTCTATAAGATTTCAAGAAGAATTAAATGAGATGATATGATATGCTTATTTAAGGAGGGTAAAGATCCCATTAGTGTGGTAAATAGAAGAATATATGTTCGAATAGACAATTTGGAAAGCGAAGAATTGTTACAAATTTTGTTTGCCGCCTTGTCTATTTGCATGTCGGCTATCCCACCTGGGACCTAACTTCACCAAACAAACCAACCATGACAAATTCCACCGCACATGTTGAACCCAAAAAAAAAAAAAATAAAGAAGAAAAGATATATTTAATATTCTTAATAGATTGTCATCACACTTTGGTTTTAACTGCTTTAGCTGTTTTAGCCTGCACATTGAGGTATCTGTGTTCTTATAATCAAACACTTGAGGAGATGTTCATTCCCTTTATTTGTCTGTTTACTTCAGAAAAATCCAAACATCGTTCCCTCCCTTTTAACATTTGCACTAAATGATGCTGTAACTTACGACAGGGCCAGACTAAAATTCTTCCTCTCTTTGAAATTGCATACTGTGCTTGATTTTACTGCATTCAATTTTTGTAGGCTACTGAAACTGGAGGGCCATATGGATCCATCAATGATGATTCTCGAACAGTTTTCAAGTATGGTATTACATTATTAGTTTTGAATTACTAAACTTCTACGTTTTTTAGTTCCAAAATTATTTTCAGCCATCATAGGGTACTGTTGAAGTAGTTCGTAGGTAACCAAAAGCATGCAATCAATCTGATCTTGTCAGGAGTTATTAGAGTGAATAAGTTATTCAGAAAGCATGTTTATTACCAACAGAAGATTGTGCTAACTCCATTGAAGGGCATGTTTAAGTCATCACCATACGTTAGATTACTTAATTGCAAATAAAGTTGGCTCTTTTATCTTCCTTCTTACATTGCTAGAATAAAGTTGGACCAGTTGGTAAGTGTTAAAAGAATAGATGTAGATGGCTCTTTTATTAAACTTGTGATATATTGTTGAATATTTTAAAGAATATTTCGAAGAATATTCAAGATAATATGGTTTTTGTCGCATCCAAATGGTAGGAAGAGATGGTAGTGGAAGCCAACAGCAACTATAGGGACTTCGCTGCCGAGATGAGCTCGAGGTAGGGGCTTACTGTTTTCAGCTTCCTGTTTAGATCTATCAATTTGCATAAAATAAGAATGACTGAACCTAAAAGAATGATTGAACCTAAAGATGATTTTTTGAAAAATAGGATCCAACAATAAAATATGTTATATTCACTATAAAAAAACTAAAATTCGAGCCAAATTATACATTTAATCCAAAAATCAAACGTGTTAAATGTCAGACGAAATATGTGATTCCCTGTTATAGTTTTTGTAAATAAATATGAAGGGGGCTTTCATTGATAATGAAATAATGCCCTTTTCATGGTAAAAATCAACTCAAGGACAGGACAACATGAAAGTGCTTTAAAGAGAGCACTTATAAGCAGGCAATTCTTTTGAACTCAG

mRNA sequence

TATAAAAATTTCAGATGGAAGTGGAGGGAATAGATGGATATAATAAAGTTGAGGTCATTCTACGAGGAATCCAACTCCGGTTGCTACTTTAAACACTCCAATCACGCTACTGAAACTGGAGGGCCATATGGATCCATCAATGATGATTCTCGAACAGAAGAGATGGTAGTGGAAGCCAACAGCAACTATAGGGACTTCGCTGCCGAGATGAGCTCGAGGTAGGGGCTTACTGTTTTCAGCTTCCTGTTTAGATCTATCAATTTGCATAAAATAAGAATGACTGAACCTAAAAGAATGATTGAACCTAAAGATGATTTTTTGAAAAATAGGATCCAACAATAAAATATGTTATATTCACTATAAAAAAACTAAAATTCGAGCCAAATTATACATTTAATCCAAAAATCAAACGTGTTAAATGTCAGACGAAATATGTGATTCCCTGTTATAGTTTTTGTAAATAAATATGAAGGGGGCTTTCATTGATAATGAAATAATGCCCTTTTCATGGTAAAAATCAACTCAAGGACAGGACAACATGAAAGTGCTTTAAAGAGAGCACTTATAAGCAGGCAATTCTTTTGAACTCAG

Coding sequence (CDS)

ATGGATATAATAAAGTTGAGGTCATTCTACGAGGAATCCAACTCCGGTTGCTACTTTAAACACTCCAATCACGCTACTGAAACTGGAGGGCCATATGGATCCATCAATGATGATTCTCGAACAGAAGAGATGGTAGTGGAAGCCAACAGCAACTATAGGGACTTCGCTGCCGAGATGAGCTCGAGGTAG

Protein sequence

MDIIKLRSFYEESNSGCYFKHSNHATETGGPYGSINDDSRTEEMVVEANSNYRDFAAEMSSR
Homology
[Close]
BLAST of Carg25868 vs. NCBI nr
Match: KAG7031339.1 (hypothetical protein SDJN02_05379 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.9 bits (320), Expect = 3.1e-26
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MDIIKLRSFYEESNSGCYFKHSNHATETGGPYGSINDDSRTEEMVVEANSNYRDFAAEMS 60
          MDIIKLRSFYEESNSGCYFKHSNHATETGGPYGSINDDSRTEEMVVEANSNYRDFAAEMS
Sbjct: 1  MDIIKLRSFYEESNSGCYFKHSNHATETGGPYGSINDDSRTEEMVVEANSNYRDFAAEMS 60

Query: 61 SR 63
          SR
Sbjct: 61 SR 62

The following BLAST results are available for this feature:
BLAST of Carg25868 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7031339.13.1e-26100.00hypothetical protein SDJN02_05379 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg25868 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25868 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25868 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25868-RACarg25868-RAmRNA