Carg25857 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25857
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase
Location	Carg_Chr04: 4704945 .. 4705857 (+)
RNA-Seq Expression	Carg25857
Synteny	Carg25857

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGTTCAAGTTCTTGCTGCTTTTCTTTTGCTTATGTTTTTGTATTTGCTCCTTTTGGTAATACAGAAACTGTGTCCTGCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATAAATTTGTCTACTGAGACTGCTTAATCAACTCTTAATCTAACTCTAATTAAGCTAATATGATTGATTTAATTATAATATTAAGATTAGTCAGATAATTGTTGTTCTGCTTTTGTGTGATTGTTTCTTTGAATTATTGTATGCTAAATCATTTATTACTCTCATTTAATTGTGTTGTTCTATTTATGGTTTTCTCATTCTTATTGATATTCATTTATGAATGGTTTTCACATTTTATTTAATCATCTTATATTATTTTATATTTATATTATTTTATTTTGACGGTTGAGAGCAATTTATTATTTTATTAATATATTTTGGTTGTAATGATGTGTAATGTTGAAGCTTTGAGTTGAGCTGTTTTTATTTGAAAATTTGCCAGAACTGTATATATTTTTTTGAAAATCAATATATAACGTTCTAATAAGATTTTTAACTCATTAATTTAATTTGCAACCAGATATGTCATAATCAACGTCCTAATTTGTTTTAAA

mRNA sequence

ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAGGAAAAAATGAAGTTAATGTTATTCTCGGGTTCAGTTTGTCTTAATTCAGTGTACTTTCCGCATATTTATCCTTAATTTTCATTTTTGATCCTTAATTTTTATTTTTGATTGGCTTAGTCTTGTTAAGGACATTTTGTTTCCTCCCTTAATAAATTTGTCTACTGAGACTGCTTAATCAACTCTTAATCTAACTCTAATTAAGCTAATATGATTGATTTAATTATAATATTAAGATTAGTCAGATAATTGTTGTTCTGCTTTTGTGTGATTGTTTCTTTGAATTATTGTATGCTAAATCATTTATTACTCTCATTTAATTGTGTTGTTCTATTTATGGTTTTCTCATTCTTATTGATATTCATTTATGAATGGTTTTCACATTTTATTTAATCATCTTATATTATTTTATATTTATATTATTTTATTTTGACGGTTGAGAGCAATTTATTATTTTATTAATATATTTTGGTTGTAATGATGTGTAATGTTGAAGCTTTGAGTTGAGCTGTTTTTATTTGAAAATTTGCCAGAACTGTATATATTTTTTTGAAAATCAATATATAACGTTCTAATAAGATTTTTAACTCATTAATTTAATTTGCAACCAGATATGTCATAATCAACGTCCTAATTTGTTTTAAA

Coding sequence (CDS)

ATGATCGTAATGAGTTGCTTTCAGGAATCTGGGAAGTATTCTTTTAGAATGCCAAACAAATGGAACTTTTCTTTCGATTACCTCTATGGAGCGATGCTTATTCTTGCAATCTACGTGCCAGGAAGTCCACATATGTACCGCTACATGCTTGTTCAGAGGTCAAAAGCTCTCTCAAAATCCAAAAAAGAGTAG

Protein sequence

MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE

Homology

[Close]

BLAST of Carg25857 vs. NCBI nr
Match: KAG7031329.1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 2.8e-27
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 0


Query: 1  MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKS 60
          MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKS
Sbjct: 1  MIVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKS 60

Query: 61 KKE 64
          KKE
Sbjct: 61 KKE 63

[Close]

BLAST of Carg25857 vs. NCBI nr
Match: KAG6600692.1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 249 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 308

Query: 62  KE 64
           KE
Sbjct: 309 KE 310

[Close]

BLAST of Carg25857 vs. NCBI nr
Match: XP_022942201.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata] >XP_022942202.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 179 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 238

Query: 62  KE 64
           KE
Sbjct: 239 KE 240

[Close]

BLAST of Carg25857 vs. NCBI nr
Match: XP_022942935.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 160 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 219

Query: 62  KE 64
           KE
Sbjct: 220 KE 221

[Close]

BLAST of Carg25857 vs. NCBI nr
Match: XP_022975511.1 (very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Cucurbita maxima] >XP_022975530.1 very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 179 LALPFMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 238

Query: 62  KE 64
           KE
Sbjct: 239 KE 240

[Close]

BLAST of Carg25857 vs. ExPASy Swiss-Prot
Match: Q7XSZ4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2A PE=2 SV=2)

HSP 1 Score: 84.3 bits (207), Expect = 5.2e-16
Identity = 38/60 (63.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           I +   + S KY  RMPNKWNFSFD+ Y ++L LAIYVPGSPHM+ YML QR KAL+K+K
Sbjct: 160 IALPYMKASEKYCLRMPNKWNFSFDFFYASILSLAIYVPGSPHMFTYMLAQRKKALAKAK 219

[Close]

BLAST of Carg25857 vs. ExPASy Swiss-Prot
Match: Q5ZEJ0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa subsp. japonica OX=39947 GN=PAS2B PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.6e-15
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           I +   + + KY  RMPNKWNFSFD+ Y ++L LA+YVPGSPHM+ YML QR KAL+K+K
Sbjct: 160 IALPYMKATEKYCLRMPNKWNFSFDFSYASILSLAVYVPGSPHMFTYMLAQRKKALAKAK 219

[Close]

BLAST of Carg25857 vs. ExPASy Swiss-Prot
Match: Q8VZB2 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis thaliana OX=3702 GN=PAS2 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-15
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 10  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 64
           S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 168 SEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 221

[Close]

BLAST of Carg25857 vs. ExPASy Swiss-Prot
Match: Q9QY80 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN=Hacd1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-07
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 8   QESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKAL 58
           ++SG +S R+PNK+N SFDY Y  ++ +A Y+P  P +Y +ML QR K L
Sbjct: 222 KKSGMFSVRLPNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 271

[Close]

BLAST of Carg25857 vs. ExPASy Swiss-Prot
Match: Q4W1W1 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris OX=9615 GN=HACD1 PE=2 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 9.9e-07
Identity = 23/50 (46.00%), Postives = 35/50 (70.00%), Query Frame = 0


Query: 8   QESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKAL 58
           +++G +S R+PNK+N SFDY Y  ++ +A Y+P  P +Y +ML QR K L
Sbjct: 190 KKTGMFSIRLPNKYNVSFDYYYFLLITMASYIPLFPQLYFHMLRQRRKVL 239

[Close]

BLAST of Carg25857 vs. ExPASy TrEMBL
Match: A0A6J1IEF4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita maxima OX=3661 GN=LOC111474885 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 179 LALPFMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 238

Query: 62  KE 64
           KE
Sbjct: 239 KE 240

[Close]

BLAST of Carg25857 vs. ExPASy TrEMBL
Match: A0A6J1FPK4 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447328 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 179 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 238

Query: 62  KE 64
           KE
Sbjct: 239 KE 240

[Close]

BLAST of Carg25857 vs. ExPASy TrEMBL
Match: A0A6J1IKY7 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita maxima OX=3661 GN=LOC111474885 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 160 LALPFMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 219

Query: 62  KE 64
           KE
Sbjct: 220 KE 221

[Close]

BLAST of Carg25857 vs. ExPASy TrEMBL
Match: A0A6J1FST0 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447818 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 179 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 238

Query: 62  KE 64
           KE
Sbjct: 239 KE 240

[Close]

BLAST of Carg25857 vs. ExPASy TrEMBL
Match: A0A6J1FQM5 (Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662 GN=LOC111447328 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 55/62 (88.71%), Postives = 58/62 (93.55%), Query Frame = 0


Query: 2   IVMSCFQESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 61
           + +   +ESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK
Sbjct: 160 LALPYMKESGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSK 219

Query: 62  KE 64
           KE
Sbjct: 220 KE 221

[Close]

BLAST of Carg25857 vs. TAIR 10
Match: AT5G10480.1 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-16
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 10  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 64
           S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 168 SEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 221

[Close]

BLAST of Carg25857 vs. TAIR 10
Match: AT5G10480.2 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-16
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 10  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 64
           S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 143 SEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 196

[Close]

BLAST of Carg25857 vs. TAIR 10
Match: AT5G10480.3 (Protein-tyrosine phosphatase-like, PTPLA )

HSP 1 Score: 81.6 bits (200), Expect = 2.4e-16
Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 10  SGKYSFRMPNKWNFSFDYLYGAMLILAIYVPGSPHMYRYMLVQRSKALSKSKKE 64
           S  YS RMPN  NFSFD+ Y  +L+LAIYVPGSPHMYRYML QR +ALSKSK+E
Sbjct: 177 SEMYSVRMPNILNFSFDFFYATILVLAIYVPGSPHMYRYMLGQRKRALSKSKRE 230

The following BLAST results are available for this feature:

BLAST of Carg25857 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7031329.1	2.8e-27	100.00	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurb...	[more]
KAG6600692.1	9.5e-23	88.71	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2, partial [Cucurb...	[more]
XP_022942201.1	9.5e-23	88.71	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X1...	[more]
XP_022942935.1	9.5e-23	88.71	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A-like isoform X2...	[more]
XP_022975511.1	9.5e-23	88.71	very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A isoform X1 [Cuc...	[more]

BLAST of Carg25857 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XSZ4	5.2e-16	63.33	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2A OS=Oryza sativa...	[more]
Q5ZEJ0	2.6e-15	60.00	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2B OS=Oryza sativa...	[more]
Q8VZB2	3.4e-15	72.22	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase PASTICCINO 2 OS=Arabidopsis t...	[more]
Q9QY80	5.8e-07	48.00	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Mus musculus OX=10090 GN...	[more]
Q4W1W1	9.9e-07	46.00	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 1 OS=Canis lupus familiaris O...	[more]

BLAST of Carg25857 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IEF4	4.6e-23	88.71	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FPK4	4.6e-23	88.71	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662...	[more]
A0A6J1IKY7	4.6e-23	88.71	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1FST0	4.6e-23	88.71	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662...	[more]
A0A6J1FQM5	4.6e-23	88.71	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase OS=Cucurbita moschata OX=3662...	[more]

BLAST of Carg25857 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G10480.1	2.4e-16	72.22	Protein-tyrosine phosphatase-like, PTPLA	[more]
AT5G10480.2	2.4e-16	72.22	Protein-tyrosine phosphatase-like, PTPLA	[more]
AT5G10480.3	2.4e-16	72.22	Protein-tyrosine phosphatase-like, PTPLA	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PFAM	PF04387	PTPLA	coord: 5..58 e-value: 8.8E-11 score: 41.8
IPR007482	Protein-tyrosine phosphatase-like, PTPLA	PANTHER	PTHR11035	PTPLA DOMAIN PROTEIN	coord: 6..63
None	No IPR available	PANTHER	PTHR11035:SF39	VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE	coord: 6..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25857-RA	Carg25857-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030497	fatty acid elongation
biological_process	GO:0030148	sphingolipid biosynthetic process
biological_process	GO:0042761	very long-chain fatty acid biosynthetic process
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0018812	3-hydroxyacyl-CoA dehydratase activity
molecular_function	GO:0102343	3-hydroxy-arachidoyl-CoA dehydratase activity
molecular_function	GO:0102344	3-hydroxy-behenoyl-CoA dehydratase activity
molecular_function	GO:0102345	3-hydroxy-lignoceroyl-CoA dehydratase activity
molecular_function	GO:0102158	very-long-chain 3-hydroxyacyl-CoA dehydratase activity