Carg25855 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25855
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUPF0725 protein At4g29550-like
LocationCarg_Chr04: 4697329 .. 4697751 (-)
RNA-Seq ExpressionCarg25855
SyntenyCarg25855
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAATGATTTTAGCTATGGATCCTTTTAAATTTTATTTACAAACTAAATTAAAAAAAACAGACGAAAGTACTTCTGGATTTGATGGCTTCTTCATCCCACATTTTGGAGGAAGAGAAAGAAGAGATAGATTCGGATGATGAATTTTTTCAAGACGGTTACCATACTATCACTAAAAAGGAAGAGATGGAATATTATTGTGCGGTCGAAGAATCCCAGGTTTATTTTCCCTTGATTTTTCACTGTTCAAACTTTTTTTTTTTTAATAAATGGGAGGATCTATGCAGGGTTTTGATGTACCAGATTTTGGTAACGTCTATGCATTTAGTCTCATCACTCCAATGAAATTGCATGAGGTCCCGGGGATGCTTAAAGAGGTTCAAATCTCAGCGAATGAAGCTATCAAACATTACAACAACGAAAAT

mRNA sequence

TTAATGATTTTAGCTATGGATCCTTTTAAATTTTATTTACAAACTAAATTAAAAAAAACAGACGAAAGTACTTCTGGATTTGATGGCTTCTTCATCCCACATTTTGGAGGAAGAGAAAGAAGAGATAGATTCGGATGATGAATTTTTTCAAGACGGTTACCATACTATCACTAAAAAGGAAGAGATGGAATATTATTGTGCGGTCGAAGAATCCCAGGGTTTTGATGTACCAGATTTTGGTAACGTCTATGCATTTAGTCTCATCACTCCAATGAAATTGCATGAGGTCCCGGGGATGCTTAAAGAGGTTCAAATCTCAGCGAATGAAGCTATCAAACATTACAACAACGAAAAT

Coding sequence (CDS)

ATGGCTTCTTCATCCCACATTTTGGAGGAAGAGAAAGAAGAGATAGATTCGGATGATGAATTTTTTCAAGACGGTTACCATACTATCACTAAAAAGGAAGAGATGGAATATTATTGTGCGGTCGAAGAATCCCAGGGTTTTGATGTACCAGATTTTGGTAACGTCTATGCATTTAGTCTCATCACTCCAATGAAATTGCATGAGGTCCCGGGGATGCTTAAAGAGGTTCAAATCTCAGCGAATGAAGCTATCAAACATTACAACAACGAAAAT

Protein sequence

MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSLITPMKLHEVPGMLKEVQISANEAIKHYNNEN
Homology
[Close]
BLAST of Carg25855 vs. NCBI nr
Match: XP_022942206.1 (uncharacterized protein LOC111447330 [Cucurbita moschata] >XP_022942207.1 uncharacterized protein LOC111447330 [Cucurbita moschata])

HSP 1 Score: 185.7 bits (470), Expect = 1.8e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
          MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL
Sbjct: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60

Query: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
          ITPMKLHEVPGMLKEVQISANEAIKHYNNEN
Sbjct: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 91

[Close]
BLAST of Carg25855 vs. NCBI nr
Match: KAG7031327.1 (hypothetical protein SDJN02_05367, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185.7 bits (470), Expect = 1.8e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
          MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL
Sbjct: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60

Query: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
          ITPMKLHEVPGMLKEVQISANEAIKHYNNEN
Sbjct: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 91

[Close]
BLAST of Carg25855 vs. NCBI nr
Match: KAG6600694.1 (hypothetical protein SDJN03_05927, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 185.7 bits (470), Expect = 1.8e-43
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
          MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL
Sbjct: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60

Query: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
          ITPMKLHEVPGMLKEVQISANEAIKHYNNEN
Sbjct: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 91

[Close]
BLAST of Carg25855 vs. NCBI nr
Match: XP_023548353.1 (UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548361.1 UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548367.1 UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.0 bits (445), Expect = 1.5e-40
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0 

Query: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
          MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAV+ESQGFDVPDFG VYAFSL
Sbjct: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVQESQGFDVPDFGTVYAFSL 60

Query: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
          ITPMKLHE P MLKEVQIS NEAIKHYNNEN
Sbjct: 61 ITPMKLHEFPSMLKEVQISPNEAIKHYNNEN 91

[Close]
BLAST of Carg25855 vs. NCBI nr
Match: XP_023521680.1 (UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 4.7e-39
Identity = 83/91 (91.21%), Postives = 86/91 (94.51%), Query Frame = 0 

Query: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
          MASSSHILEEEKEEID DD+FF+DGYHTITKKEEMEYYCAV+ESQGFDVPDFG VYAFSL
Sbjct: 1  MASSSHILEEEKEEIDLDDDFFKDGYHTITKKEEMEYYCAVQESQGFDVPDFGTVYAFSL 60

Query: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
          ITPMKLHE P MLKEVQIS NEAIKHYNNEN
Sbjct: 61 ITPMKLHEFPSMLKEVQISPNEAIKHYNNEN 91

[Close]
BLAST of Carg25855 vs. ExPASy TrEMBL
Match: A0A6J1FN74 (uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC111447330 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 8.9e-44
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0 

Query: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
          MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL
Sbjct: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60

Query: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
          ITPMKLHEVPGMLKEVQISANEAIKHYNNEN
Sbjct: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 91

[Close]
BLAST of Carg25855 vs. ExPASy TrEMBL
Match: A0A6J1IL21 (uncharacterized protein LOC111475178 OS=Cucurbita maxima OX=3661 GN=LOC111475178 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 81/91 (89.01%), Postives = 84/91 (92.31%), Query Frame = 0 

Query: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
          MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEY+CAV ESQGFDVP FG VYAF L
Sbjct: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYFCAVNESQGFDVPYFGAVYAFGL 60

Query: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
          ITPMKLH  PG+ KEVQISANEAIKHYNN+N
Sbjct: 61 ITPMKLHGFPGLFKEVQISANEAIKHYNNKN 91

[Close]
BLAST of Carg25855 vs. ExPASy TrEMBL
Match: A0A6J1IJT3 (uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.4e-36
Identity = 80/91 (87.91%), Postives = 83/91 (91.21%), Query Frame = 0 

Query: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
          MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEY+CAV ESQGFDVP FG VYAF L
Sbjct: 1  MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYFCAVNESQGFDVPYFGAVYAFGL 60

Query: 61 ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
          ITPMKLH  P + KEVQISANEAIKHYN+EN
Sbjct: 61 ITPMKLHGFPELFKEVQISANEAIKHYNSEN 91

[Close]
BLAST of Carg25855 vs. ExPASy TrEMBL
Match: A0A6J1FPD6 (UPF0725 protein At4g29550-like OS=Cucurbita moschata OX=3662 GN=LOC111447608 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.4e-28
Identity = 65/91 (71.43%), Postives = 79/91 (86.81%), Query Frame = 0 

Query: 1   MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
           M SS+H+ EEE+EEIDSDDEF+QDGYHTITKKEE EY+ AVEES+GFDVPDF  V+++SL
Sbjct: 10  MPSSNHLSEEEEEEIDSDDEFYQDGYHTITKKEEREYFRAVEESEGFDVPDFDKVFSYSL 69

Query: 61  ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
           I P+ +HE   MLKEV+ISAN+AIK+YN EN
Sbjct: 70  IAPIDMHEDSWMLKEVRISANKAIKYYNKEN 100

[Close]
BLAST of Carg25855 vs. ExPASy TrEMBL
Match: A0A6J1FVU0 (uncharacterized protein LOC111447329 OS=Cucurbita moschata OX=3662 GN=LOC111447329 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 4.0e-28
Identity = 65/91 (71.43%), Postives = 77/91 (84.62%), Query Frame = 0 

Query: 1   MASSSHILEEEKEEIDSDDEFFQDGYHTITKKEEMEYYCAVEESQGFDVPDFGNVYAFSL 60
           M SS+H+ EEE+EEIDSDDEF+QDGYHTITKKEE EY+ AVEES+GFDVPDF  V++ S 
Sbjct: 69  MPSSNHLSEEEEEEIDSDDEFYQDGYHTITKKEEREYFRAVEESEGFDVPDFDKVFSCSF 128

Query: 61  ITPMKLHEVPGMLKEVQISANEAIKHYNNEN 92
           I P+ +HE   MLKEV+ISAN+AIKHYN EN
Sbjct: 129 IIPIDMHENSWMLKEVRISANKAIKHYNKEN 159

The following BLAST results are available for this feature:
BLAST of Carg25855 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942206.11.8e-43100.00uncharacterized protein LOC111447330 [Cucurbita moschata] >XP_022942207.1 unchar... [more]
KAG7031327.11.8e-43100.00hypothetical protein SDJN02_05367, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6600694.11.8e-43100.00hypothetical protein SDJN03_05927, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023548353.11.5e-4094.51UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo] >XP_023548361.1 UPF0... [more]
XP_023521680.14.7e-3991.21UPF0725 protein At1g02770-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg25855 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25855 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FN748.9e-44100.00uncharacterized protein LOC111447330 OS=Cucurbita moschata OX=3662 GN=LOC1114473... [more]
A0A6J1IL211.2e-3789.01uncharacterized protein LOC111475178 OS=Cucurbita maxima OX=3661 GN=LOC111475178... [more]
A0A6J1IJT31.4e-3687.91uncharacterized protein LOC111475320 OS=Cucurbita maxima OX=3661 GN=LOC111475320... [more]
A0A6J1FPD61.4e-2871.43UPF0725 protein At4g29550-like OS=Cucurbita moschata OX=3662 GN=LOC111447608 PE=... [more]
A0A6J1FVU04.0e-2871.43uncharacterized protein LOC111447329 OS=Cucurbita moschata OX=3662 GN=LOC1114473... [more]
BLAST of Carg25855 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25855-RACarg25855-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010951 negative regulation of endopeptidase activity
molecular_function GO:0004869 cysteine-type endopeptidase inhibitor activity