Carg25851 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25851
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 3016099 .. 3017906 (-)
RNA-Seq ExpressionCarg25851
SyntenyCarg25851
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAATCTTGCAGGGCTATGAAGTGGAACACAGAAGGGTTCATATGCCTGCAATTCTTCACCATCATGGATGGTTTGATCCTCAGAAAGCGCCAATGGTAAATTATGACTTGAGTTTTGTTTGTACATGTTCTCTGCAGTGTAAGGAAGGAAGGAAGGAAGGAAGTCGTGCTTGGTGGAGTTGAGAGGGAAATGGGTATTTGTTTTCTTTTCCTTTTGTGCTGTTTGATGTTGATTCAAGTTCTCTACTTTTTCTTTTTTTCTTCTGCGCCATTGATGGAGAACTTGACATTTGCAGGTGTTTTTGGGAGTTGTTTCTAGCATTTGTTTGGAATTCTTCAGGGATATCAGGTACCTTTCTATCTTACACTTACATTTTTCACCAAACATGTCTTTGTTCTTCTGTGGTCCACCCCATTACCTATCAAATGACATGTAGAAGCTTACATAGATAAACACATCTCTCTCTCTCTCTAAAGATCTCACAAAGCTAAGTTAAGGAATAAGAATTTTTTTTTTTAACCCTTGTGGTTTGGTTGAGCGAGAGGGTTCAGTATCGTAAACCCATAGTTCACTGTAACAGCCCAAGACTATTGCTAGTATGTCCTCTTTGGGTTTTTTCTTTCGGGCTTCCTCTCAAGGTTTTTAAAATACGTCTGCGAGGGAGAGGGTTCCACACCCTTATAAAGAATGTTTCATTCCCCTCTCCAACTGATGTGAGATCTCACGATTCACTCCCTTAGGGCCCAGTGTACTTGCTAGCACCTTGTCCGGTGACTGGCTTTGATACCATTTATAACAGCCCAAATTCACTGTTAGCCGATATTGTCATCTTTGGGCTTTCTTCTCCAGGTTTCCCTCAATGTTTATAAAACGCGTCTACTGAGGAGAGGTTTCCACACCCTTATAAGAAATGCTTCGTTCCACTCTCTAACCAATGTGGGATCTCACAATCTACCTCCCTTGAGAGCCCAACGTCCTTGCTAACACACCGCCCAATGATTGGCTCTAATACCGTTTATAACAACCCAAGCCCACCGCTAGTAGACATTGTCATCTTTGGGCTTTCTCCTCCGGGTTTCCCCTCAAAGCTTTTAAAACTCGTCTGCTAGGGAGAGTTTTACACACCCTTATAAGAAATGCTTCTTTCTCCTTTCCAACCAATGAGTGATCTAACATTCACTTACAAATCTCGGAAGGACGATGCCTCCTCGCCTTTAGAACTTACCAAAGGTTTTTTTCTTTTTAACCCATACTCTCAATTATTTTTATCTTCACATCCCTACCTTAGATATAACAATACCGGACTGCCCTCTTCTGCTCATAGTAAACGGCAAATAGAAAAAGCAATGAGATATCTTTACATCGTACATTGGGCACATCTGGTTGTATGTACGATAATGATGCCCCTTCTGACCGATATTGGTCAATTTTTTACTATTACCCTTCTCACATAATTACTTCCCAAACCGACACAAGAATACTTTATAAACCCTTGAATATCGAACCTTAGTTCAATCAATTAAGACAGATATTCCATTAAAAGATTATAAGTTTGCTATTTTAAACTATGAGCCCCTTGATAGCTATTGGCCCCCGAACATTGCCTATACTCATTTCACAAACAAAAATCTACTCGTTTCAAAAGTTCAAATCTTATTGTAGATGACGTTAATATGAAGTCTTATTGTAGATGACGTTAATATCTGTACATCCCATTGTGAAATTTGGCAGTACGACAACTGAATCTCTCGAAAGAAACCCAATATTCTTAGAAAACCTTCATTGTTTTGAGAAAGTGGGATGA

mRNA sequence

ATGCAAATCTTGCAGGGCTATGAAGTGGAACACAGAAGGGTTCATATGCCTGCAATTCTTCACCATCATGGATGGTTTGATCCTCAGAAAGCGCCAATGATGACGTTAATATCTGTACATCCCATTGTGAAATTTGGCAGTACGACAACTGAATCTCTCGAAAGAAACCCAATATTCTTAGAAAACCTTCATTGTTTTGAGAAAGTGGGATGA

Coding sequence (CDS)

ATGCAAATCTTGCAGGGCTATGAAGTGGAACACAGAAGGGTTCATATGCCTGCAATTCTTCACCATCATGGATGGTTTGATCCTCAGAAAGCGCCAATGATGACGTTAATATCTGTACATCCCATTGTGAAATTTGGCAGTACGACAACTGAATCTCTCGAAAGAAACCCAATATTCTTAGAAAACCTTCATTGTTTTGAGAAAGTGGGATGA

Protein sequence

MQILQGYEVEHRRVHMPAILHHHGWFDPQKAPMMTLISVHPIVKFGSTTTESLERNPIFLENLHCFEKVG
Homology
[Close]
BLAST of Carg25851 vs. NCBI nr
Match: KAG7020544.1 (hypothetical protein SDJN02_17230, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 153.3 bits (386), Expect = 7.8e-34
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0 

Query: 1  MQILQGYEVEHRRVHMPAILHHHGWFDPQKAPMMTLISVHPIVKFGSTTTESLERNPIFL 60
          MQILQGYEVEHRRVHMPAILHHHGWFDPQKAPMMTLISVHPIVKFGSTTTESLERNPIFL
Sbjct: 1  MQILQGYEVEHRRVHMPAILHHHGWFDPQKAPMMTLISVHPIVKFGSTTTESLERNPIFL 60

Query: 61 ENLHCFEKVG 71
          ENLHCFEKVG
Sbjct: 61 ENLHCFEKVG 70

[Close]
BLAST of Carg25851 vs. NCBI nr
Match: KAG6585636.1 (B3 domain-containing protein REM16, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 53.9 bits (128), Expect = 6.4e-04
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = 0 

Query: 1   MQILQGYEVEHRRVHMPAILHHHG 25
           MQILQGYEVEHRRVH+PAILHHHG
Sbjct: 461 MQILQGYEVEHRRVHVPAILHHHG 484

The following BLAST results are available for this feature:
BLAST of Carg25851 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020544.17.8e-34100.00hypothetical protein SDJN02_17230, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6585636.16.4e-0495.83B3 domain-containing protein REM16, partial [Cucurbita argyrosperma subsp. soror... [more]
BLAST of Carg25851 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25851 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25851 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25851-RACarg25851-RAmRNA