Carg25842 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25842
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 3052110 .. 3056175 (-)
RNA-Seq ExpressionCarg25842
SyntenyCarg25842
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAGAAGCCATCGAGCTCGAAATCCCCCGCCTCTCGCCCTGCTTTTCTTTCATAGCCTTCGCAATGTCGTCGTCTTCTTCCTTAGCGCATCGGCATAATATTCAGCCAAGCCAAATTGCTGCGCAGTAGCGCCTTTCTCTTTCAGGCTAAGCTATCTGCAACTCACAAGTTCCGAGCACCGCGCTTGTGGAAGAAGCACAACAAGGTAATAGAATCCTTCATTTCTCTCTGTAATCCTTTCGTTTTACTGTCTTTTCGTGAATGGAATGAAAGGAAAACGCTCGAGAACTTAGGTTTTAGAATTCCGAATCCACTGAATCTCTTGGATTATGATTCAAGATATTCGAAAACAAAATCGACGGCGAATTTCTGTGGTGATTCCTTGTTGAAATGCGAACTTAAATCCATTAAAATGGCGCACGTATCGCGAGTTCCAGAGATTCGCAGTTCAAGTTTGAGTTTCAGTTAAATTGAAAATCTAGGTTAACTTTTTTTGTTCTTATTAGAAACTGGAATTCTTTGAATGTCTTCAGCAATGGAAGTTTCAATTGCAGGGGATTGGTGATAATTTTTAGAGGAAATTTGAGGAATATAATGCGTTCGACACCGAAACAGCCTCTCTTTTGCTTCAAATGGCCATGGGACATAAACCCTAAAAATCCTTCTGACTGTTCATTTGAGGGTCCTTGGCTGTTCAAATCACTGCAAAATGTGGGTGTCTTTGCTTCCAATTTCTTAAACGAAGTTTCAAAGTCATCACCTCCATGGATCAATGCTTTTAAGCCATTGTCGTTTGATGGAAATAAGATATCTAAGTCTAGAAAAAAGCTGAGTCCTGAAGAGCAAGGAGAGGCAGAAAATAGGGCATTTGCAGCAGCGTTAGCCAGTGGGAAAGAAGCCACCGTCATTGAGTTCTACTCGCCTAAATGTCCCCTTTGCAGTTCATTGCTTGGTTTTGTTACGCAGATGGAGGCAAGGAATTCACAATGGCTTAACATTGTGATGGCTGATGCAGAGAATGATAAGTGGCTGCCTGAGGTGCTCAACTTTCCTCTTACAACATCATAATTTAGTAGCTTAATATATGGTAAAGAATTAGTGGGTCTAATTTTGTGAGATCCCACCGGGAACGAAACATTCCTTATAAGGGTGTAGAAACCTCTCCTAGCAGACGCGTTTTGAAACCTTGAAGGGAAGCTTGAAGGGGAAAGTTTAAAGAGGACAATATCTGTTAGTGGTGGGTTTGGGCTGTTACAAATAGTATAAGAGCTCGACATCGGGCGGTGTGCTAGTGAGGACGTTGGGACCCTAAGAGGGGTGGATTGTGAGATCCCACATCGATTGAAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACTTCTCTCTAGTAGATGCATTTTAAAACTTTGAGGGGAAAGCTCGAAAGGAAAAGCCTAAAGAGGACAATATATGCTAGCAATAAGTTTGGATTGTTACAAATGGTATCAAAGCCAGACATCGGGTAGTGTGCCATCAAGGACCCCAAGAGGGGTGGATTGTGAGATCCCACATCGATTAGAGAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACCTTTTCCTAGCAGACGTGTTTTAAAACCTTGAGGGGAAGCTCGAAAAGGAAAGCCCAAAGAGGACAATATCTGCTAGCGGTGGGTTTGGGCTGTTACAAATGGTATCAGAGGCAAACATCAGACAGTGCCATCGAGGACGTTGGGCCCCCAAGGGGGGTGGATTGTGAAATCCCACATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGCTGTGGAAGCCTCTCCTTAGCAGACACGTTTTAAAATCCAAAGACGACAATATCTGCTAGCGGTGAGTTTGTGTTGTTACAAATTTGTTAATCCCCTTGCTACATTTTCATTAATAACTTGATGATTGCCCGAAGATCACTCTTCAAATCCTTTTCGTGTTTCTACCAAATCGCCCTGCGTGTTCAAAGCTTACCCAGAATCGTTCGTTTTGATCTTACTTCCATAGTTCTGTGGATATTTTTCTTGTAAAAGGATCATATGAACTGAAATATGTGTTGTGTTTGATTGAATGGGGGGTTTGGGTTAGCATTGTTGGTAATGTTCTTGCTTACATGTTTATGCAGCTTCTTCATTATGATATTAGTTATGTTCCTTGCTTCGTGATTTTGGACAAACAAGGCAAGGCGCTAGCAAAGACGGGTATTCCAAGCAGTCGGCTTCATGTAATTGCAGGACTTTCTCATCTTCTCAAACTGAAGCGCCCGACAACACTCCCTGGATCAGATAATAAGCAGCAGCCACCATGTTGAAACACAGACATTTGGAACAAACGGGTATGAAATGGATTTTAATTTAAGCTTTCGTTTGAATTGTGTTGTGTTTAATAATATATATATATATATAAACCATGAAGCTAGAATTAATTAATTTATGAGCTTATAATATAAAATATTATATGCTTCTATTATAACTACCCAGTTCCACCGCTAGTAGATATTATCCTCTTTGGGCTTTCCCTTTCGAGCTTCCTTTCAAGGCTTTAAAACTACTCGGGATAAGGTTTCCACACTCTTATAAATTAAGTGTGTTTTGTTCTCCTTTTTAACCAAGGTGGGACATCACAATCTACCCCCCTTCGGGGCCCAGCGTTTTCGCTGGCACTCCATTCTTTTCTCCAATCGATGTGGGACCCCTCCAAATCTACCCCCTTTGGAGCCAGCGTCTTTACTTGCACACCGCCTCGTGTTTACCCCATTTGGGGAACAACGAAAAGGCTGGCACATCGTCTAATGTCTGGCTCGACCTAGATCCACCACTCGTAAATATTGTCTTCTTTGGACATTGTGATGTCCCACATTGGTTGGAAAGGAGAACAAAACACCCTCTATAAAGTTGTGTAAACTTTCCTCTAGCAGACGCATTTTAAAGCCTTGAGGGGAAGCCCGAAAGGGAAAGTCCAAAGAAGACAATATCGGCTAGCGGTGGATTTGTGTCGTTACATCCATTCTCAACATTATCATTCATTATGTTTGAGAGTGATTTTGTGAATATATATAAGATGTACGTGAAAAACTAAAATGTCATCAACATCAAACATAAGAAAGATCTATCAATAATATTTCGAGTTTTGATATTTATATCAAATCTTTTATTAGGAAATGTATAACTAAAGGTAAAATTCATTTCATAAATAAAATTTATAACTTGTGAGCCTTATGTTTTTTATCCTAGAAATTGAACTTCTCTAAATGTGTAATGACAGCATGGGTCGTTGCAAAAATGGTACTAGAATGAAACCTCCTAATAAGATGTGGTTCGCGACAAACTAAGGCAAGAATTGGTAAGTATATGACACCCGAGTAAAGGTGGATACATGAATGAATTGAATCTACATCCGAATGAGAGCAATCATGAGGATATAGTGATCAAGGCTTAAAAGAATCGAAAGTCACTACCTATATGAACAAAATGCAACTTCCTTTACATTGGTTCAATCACAAGAGCACTTTTCCTTTACAATGGCTCCCAAGAGCAATTATATGTTGGGTATATGAACAAAGTGCACTTTTCCTTTACAATGGCTCACAAGAGCAATTATATATCGGGTAACCTCTTAAGAATTTTTTTAAGATGCATGCGAGTGAGGATAAAATATGCTAGAATGACTCCTATTTGTTTGTGGAATAATCTTCACCACTCTTAAGAAGCGAATAGTAGGTAATATGATCATGTTGCGGGAGAATGTCGTAACTATTAGGTGTCAAATCTGAATTCCAAATCTTAGACATGAGTCGTCACAAGTTGATTCGGTCTAGCGATGAAAATGTGACTCATTCCACCCACCAAATTTCTAATTCAATGATAGAGAAATTGAATGGTGAGAGAGATGGCTGAAAGGACAAAAGGAAGATGGTGAATGTTTGAATCTTCAGCAGCATTAATTCATGTTGACTGAATAACAGCTGACAGTTACTTGTGATTATCGCATTCAATGTGCTCGCTGCCAACATTGCCTCTCCTTAACTGCCC

mRNA sequence

AGGAGAAGCCATCGAGCTCGAAATCCCCCGCCTCTCGCCCTGCTTTTCTTTCATAGCCTTCGCAATGTCGTCGTCTTCTTCCTTAGCGCATCGGCATAATATTCAGCCAAGCCAAATTGCTGCGCAGTAGCGCCTTTCTCTTTCAGGCTAAGCTATCTGCAACTCACAAGTTCCGAGCACCGCGCTTGTGGAAGAAGCACAACAAGCTTCTTCATTATGATATTAGTTATGTTCCTTGCTTCGTGATTTTGGACAAACAAGGCAAGGCGCTAGCAAAGACGGGTATTCCAAGCAGTCGGCTTCATGTAATTGCAGGACTTTCTCATCTTCTCAAACTGAAGCGCCCGACAACACTCCCTGGATCAGATAATAAGCAGCAGCCACCATGTTGAAACACAGACATTTGGAACAAACGGCATGGGTCGTTGCAAAAATGGTACTAGAATGAAACCTCCTAATAAGATGTGGTTCGCGACAAACTAAGGCAAGAATTGGTAAGTATATGACACCCGAGTAAAGGTGGATACATGAATGAATTGAATCTACATCCGAATGAGAGCAATCATGAGGATATAGTGATCAAGGCTTAAAAGAATCGAAAGTCACTACCTATATGAACAAAATGCAACTTCCTTTACATTGGTTCAATCACAAGAGCACTTTTCCTTTACAATGGCTCCCAAGAGCAATTATATGTTGGGTATATGAACAAAGTGCACTTTTCCTTTACAATGGCTCACAAGAGCAATTATATATCGGGTAACCTCTTAAGAATTTTTTTAAGATGCATGCGAGTGAGGATAAAATATGCTAGAATGACTCCTATTTGTTTGTGGAATAATCTTCACCACTCTTAAGAAGCGAATAGTAGGTAATATGATCATGTTGCGGGAGAATGTCGTAACTATTAGGTGTCAAATCTGAATTCCAAATCTTAGACATGAGTCGTCACAAGTTGATTCGGTCTAGCGATGAAAATGTGACTCATTCCACCCACCAAATTTCTAATTCAATGATAGAGAAATTGAATGGTGAGAGAGATGGCTGAAAGGACAAAAGGAAGATGGTGAATGTTTGAATCTTCAGCAGCATTAATTCATGTTGACTGAATAACAGCTGACAGTTACTTGTGATTATCGCATTCAATGTGCTCGCTGCCAACATTGCCTCTCCTTAACTGCCC

Coding sequence (CDS)

ATGAACAAAGTGCACTTTTCCTTTACAATGGCTCACAAGAGCAATTATATATCGGGTAACCTCTTAAGAATTTTTTTAAGATGCATGCGAGTGAGGATAAAATATGCTAGAATGACTCCTATTTGTTTGTGGAATAATCTTCACCACTCTTAA

Protein sequence

MNKVHFSFTMAHKSNYISGNLLRIFLRCMRVRIKYARMTPICLWNNLHHS
Homology
[Close]
BLAST of Carg25842 vs. NCBI nr
Match: KAG7020552.1 (hypothetical protein SDJN02_17238 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109.4 bits (272), Expect = 9.2e-21
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 1  MNKVHFSFTMAHKSNYISGNLLRIFLRCMRVRIKYARMTPICLWNNLHHS 51
          MNKVHFSFTMAHKSNYISGNLLRIFLRCMRVRIKYARMTPICLWNNLHHS
Sbjct: 1  MNKVHFSFTMAHKSNYISGNLLRIFLRCMRVRIKYARMTPICLWNNLHHS 50

The following BLAST results are available for this feature:
BLAST of Carg25842 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7020552.19.2e-21100.00hypothetical protein SDJN02_17238 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg25842 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25842 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25842 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25842-RACarg25842-RAmRNA