Carg25841 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25841
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Maturase
Location	Carg_Chr12: 3056046 .. 3056606 (-)
RNA-Seq Expression	Carg25841
Synteny	Carg25841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTTCAGGGTTCGTGGGAGAAGCCGGAAGCTACAATGTGACCTCTGAAAAGTTGTGGGATCGGTCTTAACAAAAGGGTGAATGCAAAACTCGAAAGGAATTTACTTCTTTTTCTATTTCGTCTTTCATTTGAATTTTTAGATCTCAAGTAAAGACGTTAGCGTATCCCTTGTTTCGTCGTGGCACACCCCCACACACCAGTACCACCCGACTCAAGGGGACCAGAAAACGCCTTTCGGTTTACTCTCAATCTTTGCCGCCTTCCTTAACAAGCCCTCGAGCCTCGTTTGCATCGTCATAGAAGCGACCGGGTTGACCCAATATTGGCCCAAGGCCCACAAAAGGCCCAATATTGGCCCAACAACGAAACTGTCGCCGCCGGATTCCGAACTCAATCCTTTCTCAACGACGGACAGAAATGAAGGCAAAGGAGAAGCCATCGAGCTCGAAATCCCCCGCCTCTCGCCCTGCTTTTCTTTCATAGCCTTCGCAATGTCGTCGTCTTCTTCCTTAGCGCATCGGCATAATATTCAGCCAAGCCAAATTGCTGCGCAGTAG

mRNA sequence

ATGGGCTTCAGGATCTCAAGTAAAGACGTTAGCGTATCCCTTGTTTCGTCGTGGCACACCCCCACACACCAGTACCACCCGACTCAAGGGGACCAGAAAACGCCTTTCGGTTTACTCTCAATCTTTGCCGCCTTCCTTAACAAGCCCTCGAGCCTCGTTTGCATCGTCATAGAAGCGACCGGGTTGACCCAATATTGGCCCAAGGCCCACAAAAGGCCCAATATTGGCCCAACAACGAAACTGTCGCCGCCGGATTCCGAACTCAATCCTTTCTCAACGACGGACAGAAATGAAGGCAAAGGAGAAGCCATCGAGCTCGAAATCCCCCGCCTCTCGCCCTGCTTTTCTTTCATAGCCTTCGCAATGTCGTCGTCTTCTTCCTTAGCGCATCGGCATAATATTCAGCCAAGCCAAATTGCTGCGCAGTAG

Coding sequence (CDS)

ATGGGCTTCAGGATCTCAAGTAAAGACGTTAGCGTATCCCTTGTTTCGTCGTGGCACACCCCCACACACCAGTACCACCCGACTCAAGGGGACCAGAAAACGCCTTTCGGTTTACTCTCAATCTTTGCCGCCTTCCTTAACAAGCCCTCGAGCCTCGTTTGCATCGTCATAGAAGCGACCGGGTTGACCCAATATTGGCCCAAGGCCCACAAAAGGCCCAATATTGGCCCAACAACGAAACTGTCGCCGCCGGATTCCGAACTCAATCCTTTCTCAACGACGGACAGAAATGAAGGCAAAGGAGAAGCCATCGAGCTCGAAATCCCCCGCCTCTCGCCCTGCTTTTCTTTCATAGCCTTCGCAATGTCGTCGTCTTCTTCCTTAGCGCATCGGCATAATATTCAGCCAAGCCAAATTGCTGCGCAGTAG

Protein sequence

MGFRISSKDVSVSLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVCIVIEATGLTQYWPKAHKRPNIGPTTKLSPPDSELNPFSTTDRNEGKGEAIELEIPRLSPCFSFIAFAMSSSSSLAHRHNIQPSQIAAQ

Homology

[Close]

BLAST of Carg25841 vs. NCBI nr
Match: KAG7020553.1 (hypothetical protein SDJN02_17239, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 292.0 bits (746), Expect = 2.8e-75
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MGFRISSKDVSVSLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVCIVIEAT 60
           MGFRISSKDVSVSLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVCIVIEAT
Sbjct: 1   MGFRISSKDVSVSLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVCIVIEAT 60

Query: 61  GLTQYWPKAHKRPNIGPTTKLSPPDSELNPFSTTDRNEGKGEAIELEIPRLSPCFSFIAF 120
           GLTQYWPKAHKRPNIGPTTKLSPPDSELNPFSTTDRNEGKGEAIELEIPRLSPCFSFIAF
Sbjct: 61  GLTQYWPKAHKRPNIGPTTKLSPPDSELNPFSTTDRNEGKGEAIELEIPRLSPCFSFIAF 120

Query: 121 AMSSSSSLAHRHNIQPSQIAAQ 143
           AMSSSSSLAHRHNIQPSQIAAQ
Sbjct: 121 AMSSSSSLAHRHNIQPSQIAAQ 142

[Close]

BLAST of Carg25841 vs. NCBI nr
Match: YP_003587362.1 (maturase [Cucurbita pepo] >ACV96675.1 maturase [Cucurbita pepo])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL +  AAFLNKPSSL+C   +IEATGLT
Sbjct: 182 SLVSSWHTPHTSTTRLRGDQKTPFGLPTALAAFLNKPSSLLCAAFLIEATGLT 234

[Close]

BLAST of Carg25841 vs. NCBI nr
Match: ADL63382.1 (MatR, partial [Cucurbita pepo])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL +  AAFLNKPSSL+C   +IEATGLT
Sbjct: 142 SLVSSWHTPHTSTTRLRGDQKTPFGLPTALAAFLNKPSSLLCAAFLIEATGLT 194

[Close]

BLAST of Carg25841 vs. NCBI nr
Match: AAR20299.1 (maturase, partial [Cucurbita pepo])

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-08
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL +  AAFLNKPSSL+C   +IEATGLT
Sbjct: 120 SLVSSWHTPHTSTTRLRGDQKTPFGLPTALAAFLNKPSSLLCAAFLIEATGLT 172

[Close]

BLAST of Carg25841 vs. NCBI nr
Match: ADK56485.1 (maturase, partial [Cucurbita ficifolia])

HSP 1 Score: 68.9 bits (167), Expect = 3.9e-08
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL    AAFLNKPSSL+C   +IEATGLT
Sbjct: 130 SLVSSWHTPHTSTTRLRGDQKTPFGLPPALAAFLNKPSSLLCAAFLIEATGLT 182

[Close]

BLAST of Carg25841 vs. ExPASy TrEMBL
Match: Q6SQ32 (Maturase (Fragment) OS=Cucurbita pepo OX=3663 GN=matR PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL +  AAFLNKPSSL+C   +IEATGLT
Sbjct: 120 SLVSSWHTPHTSTTRLRGDQKTPFGLPTALAAFLNKPSSLLCAAFLIEATGLT 172

[Close]

BLAST of Carg25841 vs. ExPASy TrEMBL
Match: D5I3E8 (Maturase OS=Cucurbita pepo OX=3663 GN=matR PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL +  AAFLNKPSSL+C   +IEATGLT
Sbjct: 182 SLVSSWHTPHTSTTRLRGDQKTPFGLPTALAAFLNKPSSLLCAAFLIEATGLT 234

[Close]

BLAST of Carg25841 vs. ExPASy TrEMBL
Match: E5DKR4 (MatR (Fragment) OS=Cucurbita pepo OX=3663 GN=matR PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.1e-08
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL +  AAFLNKPSSL+C   +IEATGLT
Sbjct: 142 SLVSSWHTPHTSTTRLRGDQKTPFGLPTALAAFLNKPSSLLCAAFLIEATGLT 194

[Close]

BLAST of Carg25841 vs. ExPASy TrEMBL
Match: A0A6J1I4G9 (uncharacterized protein LOC111469563 OS=Cucurbita maxima OX=3661 GN=LOC111469563 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL    AAFLNKPSSL+C   +IEATGLT
Sbjct: 184 SLVSSWHTPHTSTTRLRGDQKTPFGLPPALAAFLNKPSSLLCAAFLIEATGLT 236

[Close]

BLAST of Carg25841 vs. ExPASy TrEMBL
Match: E2EZQ3 (Maturase (Fragment) OS=Cucurbita ficifolia OX=37645 GN=matR PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.9e-08
Identity = 36/53 (67.92%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGLLSIFAAFLNKPSSLVC--IVIEATGLT 64
           SLVSSWHTP       +GDQKTPFGL    AAFLNKPSSL+C   +IEATGLT
Sbjct: 130 SLVSSWHTPHTSTTRLRGDQKTPFGLPPALAAFLNKPSSLLCAAFLIEATGLT 182

[Close]

BLAST of Carg25841 vs. TAIR 10
Match: ATMG00520.1 (Intron maturase, type II family protein )

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-08
Identity = 35/61 (57.38%), Postives = 38/61 (62.30%), Query Frame = 0


Query: 13  SLVSSWHTPTHQYHPTQGDQKTPFGL--LSIFAAFLNKPSSLVC--IVIEATGLTQYWPK 70
           SLVSSWHTP       +GDQK PF     S  A FLNKPSSL+C   +IEA GLT   PK
Sbjct: 200 SLVSSWHTPPTSTLRLRGDQKRPFVFPPSSALAVFLNKPSSLLCAAFLIEAAGLT---PK 257

The following BLAST results are available for this feature:

BLAST of Carg25841 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020553.1	2.8e-75	100.00	hypothetical protein SDJN02_17239, partial [Cucurbita argyrosperma subsp. argyro...	[more]
YP_003587362.1	2.3e-08	67.92	maturase [Cucurbita pepo] >ACV96675.1 maturase [Cucurbita pepo]	[more]
ADL63382.1	2.3e-08	67.92	MatR, partial [Cucurbita pepo]	[more]
AAR20299.1	2.3e-08	67.92	maturase, partial [Cucurbita pepo]	[more]
ADK56485.1	3.9e-08	67.92	maturase, partial [Cucurbita ficifolia]	[more]

BLAST of Carg25841 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q6SQ32	1.1e-08	67.92	Maturase (Fragment) OS=Cucurbita pepo OX=3663 GN=matR PE=4 SV=1	[more]
D5I3E8	1.1e-08	67.92	Maturase OS=Cucurbita pepo OX=3663 GN=matR PE=4 SV=1	[more]
E5DKR4	1.1e-08	67.92	MatR (Fragment) OS=Cucurbita pepo OX=3663 GN=matR PE=4 SV=1	[more]
A0A6J1I4G9	1.9e-08	67.92	uncharacterized protein LOC111469563 OS=Cucurbita maxima OX=3661 GN=LOC111469563...	[more]
E2EZQ3	1.9e-08	67.92	Maturase (Fragment) OS=Cucurbita ficifolia OX=37645 GN=matR PE=4 SV=1	[more]

BLAST of Carg25841 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00520.1	3.2e-08	57.38	Intron maturase, type II family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25841-RA	Carg25841-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0043231	intracellular membrane-bounded organelle