Carg25802 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25802
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	Carg_Chr07: 5130418 .. 5131641 (-)
RNA-Seq Expression	Carg25802
Synteny	Carg25802

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCATCAAATTGTACAGTCCCCAGCAAGATTGGGCTTGACGAACCCTAATTCTCCTTCAATTCAAAACCCTACCCCACCGAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCCATCCAATCTTTCATCTCCGACTCCCTCCTCCACGCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTTTAGCTTCCAAGCTCTTCGAAGTTTACCCCAATCGAGCCCTTTGGCTCACTGCATTTCGGGGCTCTCTTCCCACTTTTCTTAATTCTCAAACCCAGTCGGCTCCCTCTACGCCGCTTGATTCTACTCCGTCTACTTCAAAAGAAATTCTGTCACTGTTTAATGTTCTGCAGACTCAATTATTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCTAAGCAAAAAATTGCTTATGAAATGCGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTAAAGGATGCTGAACAGGTTCTTGATGTTTTGTTTGATGATTATGCTGATTATCAGGGTCATAAACGTGTTAAAACTAGCGATGATGTCGAAAACGAGTCATTGTGTTCGACTACTACTGTTGCATCCCAGTTGAAATTATCTGATATATTGTCATATGCTCATAAAATAAGCTATACTACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTGCGCGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAATGCGTGCTTCCCAGTTGTATACTTTTGCTGATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGTACTGAGAAAACCATCGAGCCAATGATTGAGGCACCAGCTCCAGTGCCAACAGATGCCAATCCTTTAGCTCTGGCGGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGGGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTGCCGCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAGTTGAGGCATAATGCTCTTCCAGGATTACACAGACCTCAAGAGCCGATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGATGATAGTAGCGATTATGCTAGTGAAGAAGGAAGCTCTGAAGATGATGATTGA

mRNA sequence

ATGCTTCAGCATCAAATTGTACAGTCCCCAGCAAGATTGGGCTTGACGAACCCTAATTCTCCTTCAATTCAAAACCCTACCCCACCGAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCCATCCAATCTTTCATCTCCGACTCCCTCCTCCACGCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTTTAGCTTCCAAGCTCTTCGAAGTTTACCCCAATCGAGCCCTTTGGCTCACTGCATTTCGGGGCTCTCTTCCCACTTTTCTTAATTCTCAAACCCAGTCGGCTCCCTCTACGCCGCTTGATTCTACTCCGTCTACTTCAAAAGAAATTCTGTCACTGTTTAATGTTCTGCAGACTCAATTATTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCTAAGCAAAAAATTGCTTATGAAATGCGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTAAAGGATGCTGAACAGGTTCTTGATGTTTTGTTTGATGATTATGCTGATTATCAGGGTCATAAACGTGTTAAAACTAGCGATGATGTCGAAAACGAGTCATTGTGTTCGACTACTACTGTTGCATCCCAGTTGAAATTATCTGATATATTGTCATATGCTCATAAAATAAGCTATACTACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTGCGCGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAATGCGTGCTTCCCAGTTGTATACTTTTGCTGATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGTACTGAGAAAACCATCGAGCCAATGATTGAGGCACCAGCTCCAGTGCCAACAGATGCCAATCCTTTAGCTCTGGCGGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGGGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTGCCGCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAGTTGAGGCATAATGCTCTTCCAGGATTACACAGACCTCAAGAGCCGATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGATGATAGTAGCGATTATGCTAGTGAAGAAGGAAGCTCTGAAGATGATGATTGA

Coding sequence (CDS)

ATGCTTCAGCATCAAATTGTACAGTCCCCAGCAAGATTGGGCTTGACGAACCCTAATTCTCCTTCAATTCAAAACCCTACCCCACCGAAATTGCCCCCTTCTCAACAATCCCACCACCAAAATCCATCCAATCTTTCATCTCCGACTCCCTCCTCCACGCTTCTTCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCTTTAGCTTCCAAGCTCTTCGAAGTTTACCCCAATCGAGCCCTTTGGCTCACTGCATTTCGGGGCTCTCTTCCCACTTTTCTTAATTCTCAAACCCAGTCGGCTCCCTCTACGCCGCTTGATTCTACTCCGTCTACTTCAAAAGAAATTCTGTCACTGTTTAATGTTCTGCAGACTCAATTATTTGAAGCTGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCTAAGCAAAAAATTGCTTATGAAATGCGGGCTAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAACTAAAGGATGCTGAACAGGTTCTTGATGTTTTGTTTGATGATTATGCTGATTATCAGGGTCATAAACGTGTTAAAACTAGCGATGATGTCGAAAACGAGTCATTGTGTTCGACTACTACTGTTGCATCCCAGTTGAAATTATCTGATATATTGTCATATGCTCATAAAATAAGCTATACTACTTTTGCACCACCTGAATTTGGGGCTGGACAAGCTCCGTTGCGCGGGGCGCTTCCCCCTGCCCCGCAAGAAGAGCAAATGCGTGCTTCCCAGTTGTATACTTTTGCTGATCTTGATGTTGGCTTGCCTAAATCAGTTGAAAGTACTGAGAAAACCATCGAGCCAATGATTGAGGCACCAGCTCCAGTGCCAACAGATGCCAATCCTTTAGCTCTGGCGGGTATTCAAGGGCTGCTTCCTCCAAATATCACTGTGCCATCTGGTTGGAAGCCTGGAATGCCTGTGGAATTACCTAGGGATTTACCAATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTGCCGCCATTGGACTCTCTTCCTGTTGCTAGAGTTGATGAGCCACAGTTGAGGCATAATGCTCTTCCAGGATTACACAGACCTCAAGAGCCGATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGACGATGATAGTAGCGATTATGCTAGTGAAGAAGGAAGCTCTGAAGATGATGATTGA

Protein sequence

MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD

Homology

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: XP_022963248.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata] >KAG7027281.1 Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 777.3 bits (2006), Expect = 6.4e-221
Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: KAG6595269.1 (Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 770.0 bits (1987), Expect = 1.0e-218
Identity = 404/407 (99.26%), Postives = 405/407 (99.51%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKL PSQQSHHQN SNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLLPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVAR+DEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARIDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 768.1 bits (1982), Expect = 3.9e-218
Identity = 402/407 (98.77%), Postives = 405/407 (99.51%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKT+DDVENESLCS+TTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCSSTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVESTEKTIEPMIE PAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: XP_022972715.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita maxima])

HSP 1 Score: 766.9 bits (1979), Expect = 8.6e-218
Identity = 402/407 (98.77%), Postives = 404/407 (99.26%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPS QNPTPPKLPPSQQSHHQ  SNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSFQNPTPPKLPPSQQSHHQYQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKT+DDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTNDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 706.4 bits (1822), Expect = 1.4e-199
Identity = 378/409 (92.42%), Postives = 390/409 (95.35%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFLNSQTQS+PSTPLD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADY+  +RVKT DDVEN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDE
Sbjct: 301 ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDE 360

Query: 361 P-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           P QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of Carg25802 vs. ExPASy Swiss-Prot
Match: Q9LZ00 (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 486.1 bits (1250), Expect = 3.9e-136
Identity = 278/432 (64.35%), Postives = 329/432 (76.16%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHHQ--------------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS HQ               
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  --NPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPT 120
             + ++ S+   SS LL LLPPLPRAQALL QMA L SKLF+V PNRA+WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A E++
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDVE---NESLCSTTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY+  KR K  +D E   NES  S+TTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 KLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKS 300
           KL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYTFADLD+GLPK+
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPP 360
           VE+ EK +E +IE P P       + ++ I  LLPPNI VPSGWKPGMPVELPRDLP+PP
Sbjct: 301 VENMEKKVEALIEPPPP----PEAMDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPP 360

Query: 361 PGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSD 408
           PGWKPGDPV LPPL+S+   R ++ Q       GLHRP + IQVR VQLDIL +DDDSSD
Sbjct: 361 PGWKPGDPVVLPPLESIAAPRAEDHQ-HMRPSQGLHRPPDVIQVRAVQLDIL-EDDDSSD 420

[Close]

BLAST of Carg25802 vs. ExPASy Swiss-Prot
Match: Q54D00 (Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium discoideum OX=44689 GN=med4 PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.3e-06
Identity = 59/182 (32.42%), Postives = 83/182 (45.60%), Query Frame = 0


Query: 100 LNSQTQSAPSTPLD--STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIA 159
           LNSQ       P+D  S  +T   +L L N L    ++++  + +L++   +Q    +I 
Sbjct: 44  LNSQQLQQIQLPIDQISNNATPNMVLQLMNHLIDVDKIYQNTLKKLEKHQKIQKEITEIQ 103

Query: 160 YEMRAKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDVENESLCS------- 219
            E+  KD  +   A  LKD E  L+       D         SD + NE L         
Sbjct: 104 KEIEEKDKLISTLALNLKDIESFLENELSQ--DNVNINNGNASDGIVNEVLIDLKQPDDA 163

Query: 220 ---TTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQMRASQL 265
                 V  ++   D++SYAHKIS TT AP  FG    APL     PPAPQ+E MR+S L
Sbjct: 164 ASMDNIVNREVSPEDLISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDEMMRSSVL 221

[Close]

BLAST of Carg25802 vs. ExPASy TrEMBL
Match: A0A6J1HH73 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111463518 PE=3 SV=1)

HSP 1 Score: 777.3 bits (2006), Expect = 3.1e-221
Identity = 407/407 (100.00%), Postives = 407/407 (100.00%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. ExPASy TrEMBL
Match: A0A6J1I9F9 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita maxima OX=3661 GN=LOC111471233 PE=3 SV=1)

HSP 1 Score: 766.9 bits (1979), Expect = 4.2e-218
Identity = 402/407 (98.77%), Postives = 404/407 (99.26%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPS QNPTPPKLPPSQQSHHQ  SNLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSFQNPTPPKLPPSQQSHHQYQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQGHKRVKT+DDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQGHKRVKTNDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY+FADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300

Query: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360
           ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP
Sbjct: 301 ALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDEP 360

Query: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD
Sbjct: 361 QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. ExPASy TrEMBL
Match: A0A6J1CQ51 (Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=3673 GN=LOC111013711 PE=3 SV=1)

HSP 1 Score: 706.4 bits (1822), Expect = 6.7e-200
Identity = 378/409 (92.42%), Postives = 390/409 (95.35%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLPPSQQSHHQN  NLSSPTPSSTLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEV PNR+LWLTAFRGSLPTFLNSQTQS+PSTPLD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADY+  +RVKT DDVEN+SLCS TTVASQLKLSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCS-TTVASQLKLSDILSYAHRISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQEEQMRASQLY FADLDVGLPK+VESTEKTIEPMIE PAPVPTDANPL
Sbjct: 241 QAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANPL 300

Query: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           A LA IQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPV RVDE
Sbjct: 301 ANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVDE 360

Query: 361 P-QLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           P QLR NALPGLH+P EPIQVR VQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDEGSSEDDD 408

[Close]

BLAST of Carg25802 vs. ExPASy TrEMBL
Match: A0A5A7TZC1 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=MED4 PE=3 SV=1)

HSP 1 Score: 688.3 bits (1775), Expect = 1.9e-194
Identity = 368/408 (90.20%), Postives = 384/408 (94.12%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SN+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  +RVKT    ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAPV  DANPL
Sbjct: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPL 300

Query: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           + +A IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDE
Sbjct: 301 SNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDE 360

Query: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           PQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. ExPASy TrEMBL
Match: A0A1S3BLP6 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 688.3 bits (1775), Expect = 1.9e-194
Identity = 368/408 (90.20%), Postives = 384/408 (94.12%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQN SN+SS TPSSTLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQTQS+PST LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQGHKRVKTSDDVENESLCSTTTVASQLKLSDILSYAHKISYTTFAPPEFGAG 240
           LFDDYADYQ  +RVKT    ENESLCS TTVASQL+LSDILSYAH+ISYTTFAPPEFGAG
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS-TTVASQLRLSDILSYAHRISYTTFAPPEFGAG 240

Query: 241 QAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANPL 300
           QAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEKTIEPMIE PAPV  DANPL
Sbjct: 241 QAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANPL 300

Query: 301 A-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVDE 360
           + +A IQGLLPPNITVPSGWKPGMPVELP DLPMPPPGWKPGDPV LPP+DSLPV RVDE
Sbjct: 301 SNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDE 360

Query: 361 PQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEEGSSEDDD 408
           PQLR NALPGLH+P EPIQVRHVQLDILDQDDDSSDY S+EGSSEDDD
Sbjct: 361 PQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDEGSSEDDD 407

[Close]

BLAST of Carg25802 vs. TAIR 10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 486.1 bits (1250), Expect = 2.7e-137
Identity = 278/432 (64.35%), Postives = 329/432 (76.16%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPPSQQSHHQ--------------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P    S QS HQ               
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  --NPSNLSSPTPSSTLLPLLPPLPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPT 120
             + ++ S+   SS LL LLPPLPRAQALL QMA L SKLF+V PNRA+WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLNSQTQSAPSTPLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A E++
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQGHKRVKTSDDVE---NESLCSTTTVASQL 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY+  KR K  +D E   NES  S+TTV+SQL
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNESSSSSTTVSSQL 240

Query: 241 KLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKS 300
           KL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQMRASQLYTFADLD+GLPK+
Sbjct: 241 KLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPKT 300

Query: 301 VESTEKTIEPMIEAPAPVPTDANPLALAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPP 360
           VE+ EK +E +IE P P       + ++ I  LLPPNI VPSGWKPGMPVELPRDLP+PP
Sbjct: 301 VENMEKKVEALIEPPPP----PEAMDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPP 360

Query: 361 PGWKPGDPVPLPPLDSLPVARVDEPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSD 408
           PGWKPGDPV LPPL+S+   R ++ Q       GLHRP + IQVR VQLDIL +DDDSSD
Sbjct: 361 PGWKPGDPVVLPPLESIAAPRAEDHQ-HMRPSQGLHRPPDVIQVRAVQLDIL-EDDDSSD 420

The following BLAST results are available for this feature:

BLAST of Carg25802 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963248.1	6.4e-221	100.00	mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata] >KAG7...	[more]
KAG6595269.1	1.0e-218	99.26	Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyro...	[more]
XP_023518528.1	3.9e-218	98.77	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]
XP_022972715.1	8.6e-218	98.77	mediator of RNA polymerase II transcription subunit 4 [Cucurbita maxima]	[more]
XP_022143910.1	1.4e-199	92.42	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]

BLAST of Carg25802 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ00	3.9e-136	64.35	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]
Q54D00	8.3e-06	32.42	Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium ...	[more]

BLAST of Carg25802 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HH73	3.1e-221	100.00	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3...	[more]
A0A6J1I9F9	4.2e-218	98.77	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita maxima OX=366...	[more]
A0A6J1CQ51	6.7e-200	92.42	Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=...	[more]
A0A5A7TZC1	1.9e-194	90.20	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLP6	1.9e-194	90.20	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Carg25802 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02850.1	2.7e-137	64.35	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 129..266 e-value: 2.4E-7 score: 30.6
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 50..404
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 389..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 366..407
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25802-RA	Carg25802-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity