Carg25733 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25733
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein ROOT PRIMORDIUM DEFECTIVE 1
Location	Carg_Chr03: 1365937 .. 1369030 (-)
RNA-Seq Expression	Carg25733
Synteny	Carg25733

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGATTCTTCTTTTCAACCCTAATTCTTCCATCGCCATACCTGAGCCCTAATCCTTTTCTGCACCTTCAATGCCGACGAATTGCGAAGGTTCGCCTCAAATGGGTCAAGAATCGGAGTCTCGATCACATCATCGACACGGAGACCGATTTGAAGGCTGCTTCCCTCCTCAAGGACGCCATTAACCGCTCTTCCACTGGCTTCATTACTGCTAAGTCCATCGCCGATTGGCCAAAGCTGCTCGGCCTCACCATCCCTGTTCTTCGATTCATCCGGAGGTATCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGATACCGCGCTGCTTTTAGATCAGCAACAGAGTAGTATTCACCAAATTCATGAGAGCGACACTGTCGAAAGACTTTGTAGAGTTCTTATGATGATGAAAAATAGGGCTATTCCTCTTCAGTCGTTGCGTCCTTTAGAATGGGATCTAGGTCTCCCGTGTGGTTTTGAGAGGTCATTGATTCCCAAGTATCCCGATCATTTTCGATTAGTGAAGGCCTCCAATGGGGATTGGTGTCTGCGGCTTATGGAATGGCGCGAGGAATTTGCAGTTTCGGCCTTGCAAAGGAGCAATGAGAGCTCTGAACTGGGAGATGCGTATAGGCAATTCAAGAGGGGGCGTACCACATTGGCTTTTCCCTATGAGTTTTCCGAGGGGATATGGGGCACAAAAGAAGGTAAAAGCTTGGATGGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATATGAGAGTTGCAGGCAAATTGACCCCAACAGTGATCTCATGGAGAAACGAGTTGTTGGGGTTCTTCATGAGCTTTTGAGTCTCACTCTTCACAAGAAAACTAAAAGAAACTATTTGAGAAGCTTGAGAGAGGAATTGAATCTTCCCCATAAGTTCACTCGAATCTTCACCCGTTATCCCGGAATCTTCTACCTGTCTTTGAAGTGTAAGACCACGACTGTTTCTCTTAGGGAAGGGTATCAGCGAGGAAAGCTAGTGAACCCACATCCTTTGACACGTCTAAGGGAAAAGTTTTATCATGTCATGAAGACTGGTCTGTTTTACCGGGGGAAAGGTGCTGCATTGATAGAAAAGGAGGGCATTCTGCTTAATAATACAGCCGAGGAGACGGTGGAGAATGGTTTGGATGTTGAATCAGATGAGACGGGTGATGATGAATGCTTAGAGGACGAGAACTCGCAGGCAGAGGAATCTGATTCAGATTAATGGAGTCTGATAACTGGATCCTCCCTTCGCTAGTTGCCAAAAAAGAGGGACAAAAATCAAGCCTCCTATGCATATATATGCGAAATGTGAGTTTACCCTTTTCCTAGTTATTCCTTCATTAGTTTCGTTCATCACTTGTCTTGGAGGAACTTAAAGTATTGGGAAATTAGGGAGCAATTGATTTGATTGCGATTTAGACGGATTGAGTGATATCTTTTGTTTTGCTTGCAGTTTTATTGGCTGTTAACTCCATTCGAGGGATCAACATTGTCCCATGCAAAGCAATGCTTTATAGTTTATGCGATAAAGACATAAGCTATAGAGGAAAGAAATGGTTTGTGGTGACAGAGATTTGGAAAGATGGGACTATCCGCTTTCCCGACCCAGGAAAAGAAATGCTGAAGCTTTGCCATGTAAGAAACAGCTTCGTTTTCATACTAAATGACGTTCGAACTCAAAACTTGATCCAGCAAACGGTCAAAGAGGACATGGCTGGTAAAGAAATTATATATTTGCTTCTTTAGTTACATAATTTATGACCTTCCTTTGTTTCTGTTATACATGCATTGAAGGCTGAAAATAGTTGTTTGGGCACTTTTCCTCTAGAAGGTTAGACAATGAGAGTCATTTTGTTGGCGTTTCTCTGTTAGAAATCATATCTGGAATTTTATTTGTTAGGTTGTAGACTATGAACAATGTTGAGACAAGCTAAGCTATGCATGATTTTCATGGTGCTTGTGTTGTAAAGCTTATCAAGCTTACATTTATAAATTTCATTCGTCTCAGCCTTTTCAGGTTAGACCGAAGTGTGTTGGCTCTGTTGCATGCATTTAGTGATATGAACCAAGACATTAATCATGTAAGATAAACTTCAAGGAAGATGTGAAGAAAATGTTGTTCAAATTATCACACTATGTTGCCATTCATGTCACATTAAATAAGAATCAAACTTCATTTATTCTTAAATGTTTACAAATTTTGGGTAGAGTTATGATGTTTCTTTATTGTATTTTAAGGTTAGTGGTTAATTATGGTCATAAAGTACGAAGGTTACCATTCATGAAATGCCTCATGGAATGTCAAGAATTTTCATTTTGTGGCTATATAAAGTTATGTATGTTGTCTTTGTGATGTAGACTTGGAAAAGGCAGTAAAAATAGCTTTTGTGCTTTCTTCTCTACAATTTTATGTGGTTTATATTGCATATTTAGAATCATTCAAGCTTGACATGATTGATATTGCTCGTGGAGTGAATCGAATCTCAAACAAGTGTTCTTGACTTGAGATATTTGATCAACACGGTAATCTGAATTTTATTTTCCCCTGGAGTGAAATCAAATTGATTTTTGGGTTTTTAGCATTTGTGAACTAGGAGTTGGCATATCCAAGCTCTTACGAGGGGTTTTAAATAGGTATTCCTTATCATTTAGTGTACGAGGGTTTTTAGATTCAACTGACTAGGTATTCCTTATCATTTAGTTTACTCATAGATAGACCAATTCATATATTTGAACGGTAATTGGTATTCCTTAACCTTTTGTACTATTACCGTTCAAGAAGAGGTAGGTTCTTTAGGATGCTACTCCAAATGGGAATTTATTGAGGTTGTTCGTGGATAAGATAGGATACTAATTGTAAAACGAAGGGGTTTTTCCACTCTAGAAGGAGGCATCATAGATCTATACCCAAATTTTAGAAAACGAAGGATTGAGCCGAGCATTAGGGCAAAGAGGCTCGAAAAAATTAGTTTTTTTATTTTTTTATTTTTTTATTAATCGTCAGAGTCATATAATTGTTGCCATAGAAGAATGTGTTTAA

mRNA sequence

ATGAAGAGATTCTTCTTTTCAACCCTAATTCTTCCATCGCCATACCTGAGCCCTAATCCTTTTCTGCACCTTCAATGCCGACGAATTGCGAAGGTTCGCCTCAAATGGGTCAAGAATCGGAGTCTCGATCACATCATCGACACGGAGACCGATTTGAAGGCTGCTTCCCTCCTCAAGGACGCCATTAACCGCTCTTCCACTGGCTTCATTACTGCTAAGTCCATCGCCGATTGGCCAAAGCTGCTCGGCCTCACCATCCCTGTTCTTCGATTCATCCGGAGGTATCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGATACCGCGCTGCTTTTAGATCAGCAACAGAGTAGTATTCACCAAATTCATGAGAGCGACACTGTCGAAAGACTTTGTAGAGTTCTTATGATGATGAAAAATAGGGCTATTCCTCTTCAGTCGTTGCGTCCTTTAGAATGGGATCTAGGTCTCCCGTGTGGTTTTGAGAGGTCATTGATTCCCAAGTATCCCGATCATTTTCGATTAGTGAAGGCCTCCAATGGGGATTGGTGTCTGCGGCTTATGGAATGGCGCGAGGAATTTGCAGTTTCGGCCTTGCAAAGGAGCAATGAGAGCTCTGAACTGGGAGATGCGTATAGGCAATTCAAGAGGGGGCGTACCACATTGGCTTTTCCCTATGAGTTTTCCGAGGGGATATGGGGCACAAAAGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATATGAGAGTTGCAGGCAAATTGACCCCAACAGTGATCTCATGGAGAAACGAGTTGTTGGGGTTCTTCATGAGCTTTTGAGTCTCACTCTTCACAAGAAAACTAAAAGAAACTATTTGAGAAGCTTGAGAGAGGAATTGAATCTTCCCCATAAGTTCACTCGAATCTTCACCCGTTATCCCGGAATCTTCTACCTGTCTTTGAAGTGTAAGACCACGACTGTTTCTCTTAGGGAAGGGTATCAGCGAGGAAAGCTAGTGAACCCACATCCTTTGACACGTCTAAGGGAAAAGTTTTATCATGTCATGAAGACTGGTCTGTTTTACCGGGGGAAAGGTGCTGCATTGATAGAAAAGGAGGGCATTCTGCTTAATAATACAGCCGAGGAGACGGTGGAGAATGGTTTGGATGTTGAATCAGATGAGACGGTTTTATTGGCTGTTAACTCCATTCGAGGGATCAACATTGTCCCATGCAAAGCAATGCTTTATAGTTTATGCGATAAAGACATAAGCTATAGAGGAAAGAAATGGTTTGTGGTGACAGAGATTTGGAAAGATGGGACTATCCGCTTTCCCGACCCAGGAAAAGAAATGCTGAAGCTTTGCCATAGTCATATAATTGTTGCCATAGAAGAATGTGTTTAA

Coding sequence (CDS)

ATGAAGAGATTCTTCTTTTCAACCCTAATTCTTCCATCGCCATACCTGAGCCCTAATCCTTTTCTGCACCTTCAATGCCGACGAATTGCGAAGGTTCGCCTCAAATGGGTCAAGAATCGGAGTCTCGATCACATCATCGACACGGAGACCGATTTGAAGGCTGCTTCCCTCCTCAAGGACGCCATTAACCGCTCTTCCACTGGCTTCATTACTGCTAAGTCCATCGCCGATTGGCCAAAGCTGCTCGGCCTCACCATCCCTGTTCTTCGATTCATCCGGAGGTATCCAACTCTCTTTCACGAATTTCCTCATTCTCGTTACGCTAATTTGCCTTGCTTTCGTTTGACGGATACCGCGCTGCTTTTAGATCAGCAACAGAGTAGTATTCACCAAATTCATGAGAGCGACACTGTCGAAAGACTTTGTAGAGTTCTTATGATGATGAAAAATAGGGCTATTCCTCTTCAGTCGTTGCGTCCTTTAGAATGGGATCTAGGTCTCCCGTGTGGTTTTGAGAGGTCATTGATTCCCAAGTATCCCGATCATTTTCGATTAGTGAAGGCCTCCAATGGGGATTGGTGTCTGCGGCTTATGGAATGGCGCGAGGAATTTGCAGTTTCGGCCTTGCAAAGGAGCAATGAGAGCTCTGAACTGGGAGATGCGTATAGGCAATTCAAGAGGGGGCGTACCACATTGGCTTTTCCCTATGAGTTTTCCGAGGGGATATGGGGCACAAAAGAAGAGTTTCAGAAGTTACCTTACATTTCTCCATATGAGAGTTGCAGGCAAATTGACCCCAACAGTGATCTCATGGAGAAACGAGTTGTTGGGGTTCTTCATGAGCTTTTGAGTCTCACTCTTCACAAGAAAACTAAAAGAAACTATTTGAGAAGCTTGAGAGAGGAATTGAATCTTCCCCATAAGTTCACTCGAATCTTCACCCGTTATCCCGGAATCTTCTACCTGTCTTTGAAGTGTAAGACCACGACTGTTTCTCTTAGGGAAGGGTATCAGCGAGGAAAGCTAGTGAACCCACATCCTTTGACACGTCTAAGGGAAAAGTTTTATCATGTCATGAAGACTGGTCTGTTTTACCGGGGGAAAGGTGCTGCATTGATAGAAAAGGAGGGCATTCTGCTTAATAATACAGCCGAGGAGACGGTGGAGAATGGTTTGGATGTTGAATCAGATGAGACGGTTTTATTGGCTGTTAACTCCATTCGAGGGATCAACATTGTCCCATGCAAAGCAATGCTTTATAGTTTATGCGATAAAGACATAAGCTATAGAGGAAAGAAATGGTTTGTGGTGACAGAGATTTGGAAAGATGGGACTATCCGCTTTCCCGACCCAGGAAAAGAAATGCTGAAGCTTTGCCATAGTCATATAATTGTTGCCATAGAAGAATGTGTTTAA

Protein sequence

MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSEGIWGTKEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDETVLLAVNSIRGINIVPCKAMLYSLCDKDISYRGKKWFVVTEIWKDGTIRFPDPGKEMLKLCHSHIIVAIEECV

Homology

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BLAST of Carg25733 vs. NCBI nr
Match: KAG7033566.1 (Protein ROOT PRIMORDIUM DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 969.1 bits (2504), Expect = 1.3e-278
Identity = 471/471 (100.00%), Postives = 471/471 (100.00%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240

Query: 241 GIWGTKEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLR 300
           GIWGTKEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLR
Sbjct: 241 GIWGTKEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLR 300

Query: 301 EELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMK 360
           EELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMK
Sbjct: 301 EELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMK 360

Query: 361 TGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDETVLLAVNSIRGINIVPCKAMLY 420
           TGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDETVLLAVNSIRGINIVPCKAMLY
Sbjct: 361 TGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDETVLLAVNSIRGINIVPCKAMLY 420

Query: 421 SLCDKDISYRGKKWFVVTEIWKDGTIRFPDPGKEMLKLCHSHIIVAIEECV 472
           SLCDKDISYRGKKWFVVTEIWKDGTIRFPDPGKEMLKLCHSHIIVAIEECV
Sbjct: 421 SLCDKDISYRGKKWFVVTEIWKDGTIRFPDPGKEMLKLCHSHIIVAIEECV 471

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BLAST of Carg25733 vs. NCBI nr
Match: KAG6603284.1 (Protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 786.2 bits (2029), Expect = 1.6e-223
Identity = 388/405 (95.80%), Postives = 390/405 (96.30%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MK FFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKSFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQ+SSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 LLDQQESSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREE+NLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK
Sbjct: 301 YLRSLREEMNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET
Sbjct: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 405

[Close]

BLAST of Carg25733 vs. NCBI nr
Match: XP_022928600.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata])

HSP 1 Score: 783.1 bits (2021), Expect = 1.3e-222
Identity = 389/405 (96.05%), Postives = 389/405 (96.05%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MK FFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKSFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AINRSSTGFITAKSIAD PKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AINRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK
Sbjct: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET
Sbjct: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 405

[Close]

BLAST of Carg25733 vs. NCBI nr
Match: XP_023543563.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 779.6 bits (2012), Expect = 1.5e-221
Identity = 385/405 (95.06%), Postives = 388/405 (95.80%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MK FFFSTLILPSP+LSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKSFFFSTLILPSPFLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQ+SSIHQIHESDTVERLCRVLMMMK RAIPLQSLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 LLDQQESSIHQIHESDTVERLCRVLMMMKTRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESS+LGDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSQLGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK
Sbjct: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVMKTGLFYRGKGAALIEKEGILLNNTAEE VENGLDVESDET
Sbjct: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEEMVENGLDVESDET 405

[Close]

BLAST of Carg25733 vs. NCBI nr
Match: XP_023543562.1 (protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 778.9 bits (2010), Expect = 2.5e-221
Identity = 384/405 (94.81%), Postives = 388/405 (95.80%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MK FFFSTLILPSP+LSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKSFFFSTLILPSPFLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQ+SSIHQIHESDTVERLCRVLMMMK RAIPLQSLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 LLDQQESSIHQIHESDTVERLCRVLMMMKTRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESS+LGDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSQLGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPY+SPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYLSPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK
Sbjct: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVMKTGLFYRGKGAALIEKEGILLNNTAEE VENGLDVESDET
Sbjct: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEEMVENGLDVESDET 405

[Close]

BLAST of Carg25733 vs. ExPASy Swiss-Prot
Match: Q9ZUZ6 (Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=WTF9 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.8e-44
Identity = 115/344 (33.43%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 25  QCRRIAKVRLKWVKNRSLDHI--IDTETDLKAASLLKDAINRSSTGFITAKSIADWPKLL 84
           Q R    V +KW ++   D+I  I   + LK+   LK+ I +     I   +I+   +  
Sbjct: 20  QKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQF 79

Query: 85  GLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLC 144
            ++  +  F+R++P++F EF    Y NLP FRLT  A  LD+Q+  ++Q    D  +RL 
Sbjct: 80  DVSTKIAHFLRKFPSIFEEFVGPEY-NLPWFRLTPEATELDRQERVVYQTSADDLRDRLK 139

Query: 145 RVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWRE 204
           ++++M K+  +PL  ++ ++W LGLP  + +         FR V   +G   L +     
Sbjct: 140 KLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGG 199

Query: 205 EFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSEG------IWGTKEEFQKLPYIS 264
           +  +S LQ++      G+   +       + FP   S+G      I     EFQKLPY+S
Sbjct: 200 DKVLSVLQKNAMKKRRGEVSLE------EIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVS 259

Query: 265 PYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRY 324
           PY+    +DP+SD+ EKRVVG LHELL L +    +R  L  L++   LP K  + F R+
Sbjct: 260 PYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERH 319

Query: 325 PGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMK 361
           P IFYLS+K KT T  LRE Y+    V  HP+  +R+K+  +MK
Sbjct: 320 PQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMK 356

[Close]

BLAST of Carg25733 vs. ExPASy Swiss-Prot
Match: Q65XL5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0571100 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 5.6e-38
Identity = 122/401 (30.42%), Postives = 190/401 (47.38%), Query Frame = 0


Query: 14  PYLSPNPFLHL----QCRRIAKVRLKWVKNRS---LDHIIDTETDLKAASLLKDAINRSS 73
           P L P P L L      RR+A V    VK R     D++I  +  LK    L++ +  + 
Sbjct: 34  PLLHPPPPLRLLRPGAPRRLAVVAQAAVKRRKEIPFDNVIQRDKKLKLVLKLRNILVSNP 93

Query: 74  TGFITAKSIADWPKLLGLTIP--VLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQ 133
              ++ + +  + + LGLT    ++  ++R+P +F       Y+    FRLT  A  L  
Sbjct: 94  DRVMSLRDLGRFRRDLGLTRKRRLIALLKRFPGVFEVVEEGVYSLR--FRLTPAAERLYL 153

Query: 134 QQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFR 193
            +  +    E   V +L ++LMM +++ I ++ +  L+ DLGLP  F  ++  +YP +FR
Sbjct: 154 DELHLKNESEGLAVTKLRKLLMMSQDKRILIEKIAHLKNDLGLPPEFRDTICLRYPQYFR 213

Query: 194 LVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAY-------RQFKRGRTTLAFPYE 253
           +V+   G   L L  W  E AVSA + + E +   +         R  K  R  L    +
Sbjct: 214 VVQMDRGPG-LELTHWDPELAVSAAEVAEEENRAREEQERNLIIDRPLKFNRVKLPQGLK 273

Query: 254 FSEGIWGTKEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLR 313
            S G      +F+++PYISPY     +   S   EK   GV+HE+LSLTL K+T  ++L 
Sbjct: 274 LSRGEARRVAQFKEMPYISPYSDFSHLRSGSAEKEKHACGVVHEILSLTLEKRTLVDHLT 333

Query: 314 SLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYH 373
             REE         +  R+P +FY+SLK    +V LRE Y+  +LV    L  L+EK   
Sbjct: 334 HFREEFRFSQSLRGMLIRHPDMFYVSLKGDRDSVFLREAYKNSQLVEKSKLVLLKEKMRA 393

Query: 374 VMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDE 399
           ++    F R +G     +E    N  A + +  G DVE DE
Sbjct: 394 LVAVPRFPR-RGVPATSEEADRTNGAA-QMLSEGSDVEDDE 429

[Close]

BLAST of Carg25733 vs. ExPASy Swiss-Prot
Match: B6TTV8 (Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.9e-36
Identity = 114/377 (30.24%), Postives = 176/377 (46.68%), Query Frame = 0


Query: 2   KRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRS---LDHIIDTETDLKAASLL 61
           K  F    + P P   P P L L+ R  A V    VK R     D +I  +  LK    L
Sbjct: 21  KSLFLGAPLPPPPRPPPFP-LRLRPRPAAVVAQAAVKRRKEAPFDTVIQRDKKLKLVLKL 80

Query: 62  KDAINRSSTGFITAKSIADWPKLLGLTIP--VLRFIRRYPTLFHEFPHSRYANLPCFRLT 121
           ++ +       ++ + +  + + LGLT    ++  +RR+P +F       Y+    FRLT
Sbjct: 81  RNILVAQPDRVMSLRELGRFRRDLGLTRKRRLIALLRRFPGVFDVVEEGVYSLR--FRLT 140

Query: 122 DTALLLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLI 181
             A  L   +  +    E   V +L ++LMM + + I ++ +  L+ DLGLP  F  ++ 
Sbjct: 141 PAAERLYLDELRLRNESEGLAVAKLRKLLMMSQEKRILIEKVAHLKHDLGLPPEFRDTVC 200

Query: 182 PKYPDHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAY-------RQFKRGR 241
            +YP +FR+V+   G   L L  W  E AVSA + + E S   +A        R  K  R
Sbjct: 201 LRYPQYFRVVRMDRGP-ALELTHWDPELAVSAAELAEEESRAREAEERNLIIDRPLKFNR 260

Query: 242 TTLAFPYEFSEGIWGTKEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHK 301
             L    + + G       F+++PYISPY     +   SD  EK   GV+HE+LSLT+ K
Sbjct: 261 VRLPKGLKLTRGEARRIARFKEMPYISPYADFSHLRSGSDEKEKHACGVVHEILSLTVEK 320

Query: 302 KTKRNYLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLT 361
           +T  ++L   REE         +  R+P +FY+S K    +V LRE Y+  +LV  + L 
Sbjct: 321 RTLVDHLTHFREEFRFSQSLRGMIIRHPDMFYVSFKGDRDSVFLREAYKDSQLVEKNQLV 380

Query: 362 RLREKFYHVMKTGLFYR 367
            L+EK   ++    F R
Sbjct: 381 LLKEKMRALVAVPRFPR 393

[Close]

BLAST of Carg25733 vs. ExPASy Swiss-Prot
Match: A0MFS5 (Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At4g01037 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 4.6e-32
Identity = 102/377 (27.06%), Postives = 176/377 (46.68%), Query Frame = 0


Query: 31  KVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADWPKLLGL--TIPV 90
           +  +K  K  + D ++  +  LK    ++  +       ++ + +  + + LGL      
Sbjct: 73  RAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRRF 132

Query: 91  LRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLCRVLMMM 150
           +  +R+YP +F       Y+    F++T  A  L   +  I    E   V +L +++MM 
Sbjct: 133 IALLRKYPGVFEIVEEGAYSLR--FKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVMMS 192

Query: 151 KNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWREEFAVSA 210
            ++ I L+ +  L+ DLGLP  F  ++  +YP +FR+V    G   L L  W  E AVSA
Sbjct: 193 IDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGP-ALELTHWDPELAVSA 252

Query: 211 LQRSNESSELGDAY-------RQFKRGRTTLAFPYEFSEGIWGTKEEFQKLPYISPYESC 270
            + S + +   ++        R  K  R  L      S+       +F+ + YISPY+  
Sbjct: 253 AELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKDF 312

Query: 271 RQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFY 330
             +   +   EK   GV+HELLSLT  K+T  ++L   REE     +   +  R+P +FY
Sbjct: 313 SHLRSGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDLFY 372

Query: 331 LSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKGAALIEKEGILLN 390
           +SLK +  +V LRE Y+  +L++  PLT ++EK   ++    F R +G    ++EG    
Sbjct: 373 VSLKGERDSVFLREAYRNSELIDKDPLTLVKEKMRALVSVPRFPR-RGGPRKDEEG---- 432

Query: 391 NTAEETVENGLDVESDE 399
               E   +G D + +E
Sbjct: 433 ---REVEIDGSDADGEE 438

[Close]

BLAST of Carg25733 vs. ExPASy Swiss-Prot
Match: Q689D6 (Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.8e-26
Identity = 92/281 (32.74%), Postives = 139/281 (49.47%), Query Frame = 0


Query: 91  FIRRYPTLFHEFPHSRYANLPCFRLTDTAL--LLDQQQSSIHQIHESDTVERLCRVLMMM 150
           F+ ++P +F  + H     L C RLT  AL  +  + ++ + QI   D V RL +++MM 
Sbjct: 104 FLLKFPHVFEIYEHPVQRILYC-RLTRKALDQIRHEHEAVLDQI--PDAVTRLRKLVMMS 163

Query: 151 KNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKA-SNGDWCLRLMEWREEFAVS 210
               I L+ +R    + GLP  FE S+I K+P  FRL+      D  + ++E     ++ 
Sbjct: 164 NTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSIC 223

Query: 211 ALQRSNE-SSELGDAYRQFKRGRTTLAFPYEFSEG------IWGTKEEFQKLPYISPYES 270
           A++R  E          +  R    + FP  F  G      +W    ++Q+LPY SPYE 
Sbjct: 224 AIERVREIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVW----KWQRLPYWSPYED 283

Query: 271 CRQIDPNS----DLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRY 330
               D  S    + +EKR V  +HELLSLT+ KK     +   R  +NLP K      ++
Sbjct: 284 ISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLLQH 343

Query: 331 PGIFYLSLK---CKTTTVSLREGYQRGKLVNPHPLTRLREK 355
            GIFY+S +    K  TV LREGY+RG+LV P+ +   R +
Sbjct: 344 QGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRR 377

[Close]

BLAST of Carg25733 vs. ExPASy TrEMBL
Match: A0A6J1ES37 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111435458 PE=4 SV=1)

HSP 1 Score: 783.1 bits (2021), Expect = 6.5e-223
Identity = 389/405 (96.05%), Postives = 389/405 (96.05%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MK FFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKSFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AINRSSTGFITAKSIAD PKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AINRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK
Sbjct: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET
Sbjct: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 405

[Close]

BLAST of Carg25733 vs. ExPASy TrEMBL
Match: A0A6J1EL68 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111435566 PE=4 SV=1)

HSP 1 Score: 777.7 bits (2007), Expect = 2.7e-221
Identity = 387/405 (95.56%), Postives = 387/405 (95.56%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MK FFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKIFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AINRSSTGFITAKSIAD PKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AINRSSTGFITAKSIADCPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFER LIPKYP
Sbjct: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERFLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK
Sbjct: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVMKTGLFYRGKGAALIEKEGILLNNTAEE VENGLDVESDET
Sbjct: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEEMVENGLDVESDET 405

[Close]

BLAST of Carg25733 vs. ExPASy TrEMBL
Match: A0A6J1HXS6 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467211 PE=4 SV=1)

HSP 1 Score: 758.4 bits (1957), Expect = 1.7e-215
Identity = 375/405 (92.59%), Postives = 380/405 (93.83%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MK F FSTLIL SPYLSPNPFL LQCR IAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKSFSFSTLILRSPYLSPNPFLRLQCRGIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AI RSSTGF+T KSIADW KLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AIKRSSTGFVTVKSIADWQKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQ++S+HQIHESDTVERLCRVLMMMKNRAIPL SLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 LLDQQETSVHQIHESDTVERLCRVLMMMKNRAIPLPSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEW EEFAVSALQRSNESSELGDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKASNGDWCLRLMEWAEEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPY+SPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYVSPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK
Sbjct: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVMKTGLFYRGKGAALIEKEGILLNNTAEE VENGLDVESDET
Sbjct: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEEMVENGLDVESDET 405

[Close]

BLAST of Carg25733 vs. ExPASy TrEMBL
Match: A0A6J1HVG3 (protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467212 PE=4 SV=1)

HSP 1 Score: 754.6 bits (1947), Expect = 2.5e-214
Identity = 374/405 (92.35%), Postives = 379/405 (93.58%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           MK F FSTLIL SPYLSPNPFL LQCR IAKVRLKWVKNRSLDHIIDTETDLKAASLLKD
Sbjct: 1   MKSFSFSTLILRSPYLSPNPFLLLQCRGIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AI RSSTGF+T KSIADW KLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL
Sbjct: 61  AIKRSSTGFVTIKSIADWQKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
           LLDQQ++S+HQIHESDTVERLCRVLMMMKNRAIPL SLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 LLDQQETSVHQIHESDTVERLCRVLMMMKNRAIPLPSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKASNGDWCLRLMEW EEFAVSALQRSNESSELGDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKASNGDWCLRLMEWAEEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPY+SPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYVSPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK
Sbjct: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVMKTGLFYRGKGAALIEKEGILLNNTAEE VENGLDVE DET
Sbjct: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEEMVENGLDVELDET 405

[Close]

BLAST of Carg25733 vs. ExPASy TrEMBL
Match: A0A6J1DTM9 (protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia OX=3673 GN=LOC111023010 PE=4 SV=1)

HSP 1 Score: 698.4 bits (1801), Expect = 2.1e-197
Identity = 345/405 (85.19%), Postives = 359/405 (88.64%), Query Frame = 0


Query: 1   MKRFFFSTLILPSPYLSPNPFLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKD 60
           M R  F TL L   Y SP  FLH Q R IAKVRLKWVKNRSLDHIID ETDLKAASLLKD
Sbjct: 1   MNRLLFFTLNLQPLYQSPKLFLHHQWRGIAKVRLKWVKNRSLDHIIDMETDLKAASLLKD 60

Query: 61  AINRSSTGFITAKSIADWPKLLGLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTAL 120
           AI RSSTGFIT KSIADW KLLGLTIP+LRFIRRYPTLFHEFPHSRYANLPCFRLT+TA+
Sbjct: 61  AIKRSSTGFITVKSIADWQKLLGLTIPILRFIRRYPTLFHEFPHSRYANLPCFRLTETAM 120

Query: 121 LLDQQQSSIHQIHESDTVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYP 180
            LD Q+SSIHQ+HESDTVERLCR+LMMMK RA+PL SLRPLEWDLGLPCGFERSLIPKYP
Sbjct: 121 FLDHQESSIHQVHESDTVERLCRMLMMMKTRALPLHSLRPLEWDLGLPCGFERSLIPKYP 180

Query: 181 DHFRLVKASNGDWCLRLMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSE 240
           DHFRLVKA NGDWCLRL++WR+EFAVSALQRSNE+SE GDAYRQFKRGRTTLAFP  F  
Sbjct: 181 DHFRLVKAPNGDWCLRLVQWRDEFAVSALQRSNENSESGDAYRQFKRGRTTLAFPMSFPR 240

Query: 241 GIWGTK------EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300
           G    K      EEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN
Sbjct: 241 GYGAQKKVKAWMEEFQKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRN 300

Query: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREK 360
           YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVS+REGYQRGKLVNPHPL  LREK
Sbjct: 301 YLRSLREELNLPHKFTRIFTRYPGIFYLSLKCKTTTVSIREGYQRGKLVNPHPLASLREK 360

Query: 361 FYHVMKTGLFYRGKGAALIEKEGILLNNTAEETVENGLDVESDET 400
           FYHVM TGL YRGKGAALI KEGILL+NT EE VE+GLDVE DET
Sbjct: 361 FYHVMNTGLLYRGKGAALIAKEGILLDNTTEEVVEDGLDVELDET 405

[Close]

BLAST of Carg25733 vs. TAIR 10
Match: AT3G58520.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 534.6 bits (1376), Expect = 7.8e-152
Identity = 252/376 (67.02%), Postives = 309/376 (82.18%), Query Frame = 0


Query: 29  IAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADWPKLLGLTIPV 88
           + KVRLKWVKN++LDH+IDTETDLKAA +LKDAI RS TGF+TAKS+ADW KLLGLT+PV
Sbjct: 28  MTKVRLKWVKNKNLDHVIDTETDLKAACILKDAIKRSPTGFLTAKSVADWQKLLGLTVPV 87

Query: 89  LRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLCRVLMMM 148
           LRF+RRYPTLFHEFPH+RYA+LPCF+LTDTAL+LD Q+  IHQ HE+DTVERLCRVLMMM
Sbjct: 88  LRFLRRYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRVLMMM 147

Query: 149 KNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWREEFAVSA 208
           +++ + L+SL  L++DLGLP  +E++L+ KYPDHF  VKASNG+ CL+L++WR+EFA SA
Sbjct: 148 RSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPCLKLVKWRDEFAFSA 207

Query: 209 LQRSNESSELG---DAYRQFKRGRTTLAFPYEFSEGIWGTK------EEFQKLPYISPYE 268
           LQ+ NE +++      YR+FKRG++TL FP  F  G    K      +EFQKLPYISPY+
Sbjct: 208 LQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPYISPYD 267

Query: 269 SCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGI 328
               IDP SDLMEKR V VLHELLSLT+HKKTKRNYLRS+R ELN+PHKFTR+FTRYPGI
Sbjct: 268 DPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTRYPGI 327

Query: 329 FYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKGAALIEKEGIL 388
           FYLSLKCKTTTV L+EGY+RGKLV+PHPLTRLR+KFYHVM+TG  YR +G  ++ KE +L
Sbjct: 328 FYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVMRTGFLYRARGLGMVSKEELL 387

Query: 389 LNNTAEETVENGLDVE 396
           L+   ++  E G + E
Sbjct: 388 LDRPEDDLEEEGSEEE 403

[Close]

BLAST of Carg25733 vs. TAIR 10
Match: AT3G58520.2 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 481.5 bits (1238), Expect = 7.8e-136
Identity = 234/377 (62.07%), Postives = 289/377 (76.66%), Query Frame = 0


Query: 29  IAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSI-ADWPKLLGLTIP 88
           + KVRLKWVKN++LDH+IDTETDLKAA +LKDAI RS TG    ++    W K       
Sbjct: 28  MTKVRLKWVKNKNLDHVIDTETDLKAACILKDAIKRSPTGITIRENFNCYWNK------- 87

Query: 89  VLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLCRVLMM 148
                 RYPTLFHEFPH+RYA+LPCF+LTDTAL+LD Q+  IHQ HE+DTVERLCRVLMM
Sbjct: 88  ------RYPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRVLMM 147

Query: 149 MKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWREEFAVS 208
           M+++ + L+SL  L++DLGLP  +E++L+ KYPDHF  VKASNG+ CL+L++WR+EFA S
Sbjct: 148 MRSKTVSLRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPCLKLVKWRDEFAFS 207

Query: 209 ALQRSNESSELG---DAYRQFKRGRTTLAFPYEFSEGIWGTK------EEFQKLPYISPY 268
           ALQ+ NE +++      YR+FKRG++TL FP  F  G    K      +EFQKLPYISPY
Sbjct: 208 ALQKRNEDNDVSGEESRYREFKRGQSTLTFPMSFPRGYGAQKKVKAWMDEFQKLPYISPY 267

Query: 269 ESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPG 328
           +    IDP SDLMEKR V VLHELLSLT+HKKTKRNYLRS+R ELN+PHKFTR+FTRYPG
Sbjct: 268 DDPSNIDPESDLMEKRAVAVLHELLSLTIHKKTKRNYLRSMRAELNIPHKFTRLFTRYPG 327

Query: 329 IFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKGAALIEKEGI 388
           IFYLSLKCKTTTV L+EGY+RGKLV+PHPLTRLR+KFYHVM+TG  YR +G  ++ KE +
Sbjct: 328 IFYLSLKCKTTTVILKEGYRRGKLVDPHPLTRLRDKFYHVMRTGFLYRARGLGMVSKEEL 387

Query: 389 LLNNTAEETVENGLDVE 396
           LL+   ++  E G + E
Sbjct: 388 LLDRPEDDLEEEGSEEE 391

[Close]

BLAST of Carg25733 vs. TAIR 10
Match: AT5G48040.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 253.4 bits (646), Expect = 3.5e-67
Identity = 156/400 (39.00%), Postives = 220/400 (55.00%), Query Frame = 0


Query: 21  FLHLQCRRIAKVRLKWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADWPK 80
           F + Q   +  V+LKWVK+R LD ++  E  L+A   L   I+ S    +    +     
Sbjct: 24  FFYQQRCGLVNVKLKWVKDRELDAVVVREKHLRAVCNLVSVISASPDLRLPIFKLLPHRG 83

Query: 81  LLGL--TIPVLRFIRRYPTLF--HEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESD 140
            LGL   + +  FIRRYP +F  H +  S   ++PCF LT   + L  ++  + +++E D
Sbjct: 84  QLGLPQELKLSAFIRRYPNIFVEHCYWDSAGTSVPCFGLTRETIDLYYEEVDVSRVNERD 143

Query: 141 TVERLCRVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLR 200
            + RLC++LM+   R + L S+  L WDLGLP  +  SLI K+PD F LVK S+    L+
Sbjct: 144 VLVRLCKLLMLTCERTLSLHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDGLK 203

Query: 201 LMEWREEFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSEGIWGTK-------EEF 260
           L+ W E  AVS +Q      ++G+  R        +AFP +F+ G +G K       +E+
Sbjct: 204 LIHWDEHLAVSQMQL---REDVGNDER--------MAFPVKFTRG-FGLKRKSIEWLQEW 263

Query: 261 QKLPYISPYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKF 320
           Q+LPY SPY     +DP +DL EKR VGV HELL LT+ KKT+R  + +LR+   LP KF
Sbjct: 264 QRLPYTSPYVDASHLDPRTDLSEKRNVGVFHELLHLTIGKKTERKNVSNLRKPFALPQKF 323

Query: 321 TRIFTRYPGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKTGLFYRGKG 380
           T++F R+PGIFY+S+KC T TV LRE Y R  L+  HPL  +REKF ++M  G   R +G
Sbjct: 324 TKVFERHPGIFYISMKCDTQTVILREAYDRRHLIEKHPLVEVREKFANMMNEGFLDRSRG 383

Query: 381 AALIEKEGILLNNTAEETVENGLDVESDETVLLAVNSIRG 410
                 E  L  N     ++    V SDE   L  N I G
Sbjct: 384 LYQKSVEADLEKN----NIKTSYPVWSDEEEELDNNLISG 407

[Close]

BLAST of Carg25733 vs. TAIR 10
Match: AT1G71850.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 194.1 bits (492), Expect = 2.5e-49
Identity = 111/339 (32.74%), Postives = 187/339 (55.16%), Query Frame = 0


Query: 35  KWVKNRSLDHIIDTETDLKAASLLKDAINRSSTGFITAKSIADWPKLLGLTIPVLRFIRR 94
           K+V++R LDH ++ E +L+    +KD I       +    I      L + +  + FIR 
Sbjct: 30  KFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKDSLRVPLRPIEFIRS 89

Query: 95  YPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIH--QIHESDTVERLCRVLMMMKNRA 154
           +P++F EF        P   LT   L  D  +  ++  + ++    +RL ++LM+ +   
Sbjct: 90  FPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGLADRLLKLLMINRINK 149

Query: 155 IPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKAS----NGDWCLRLMEWREEFAVSA 214
           IPL+ L  L+WDLGLP  +  +++P++PD+FR++K+     +G+  L L+ W  E AVS 
Sbjct: 150 IPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGE--LELVCWSNEHAVSV 209

Query: 215 LQRSNESSELGDAYRQFKRGRTTLAFPYEFSEGIWGTK------EEFQKLPYISPYESCR 274
           L++   +   G    ++ +G + +AFP +FS G    K      +++QKLPYISPYE+  
Sbjct: 210 LEKKARTLRKG----EYTKG-SAIAFPMKFSNGFVVDKKMKKWIDDWQKLPYISPYENAL 269

Query: 275 QIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRYPGIFYL 334
            +   SD  +K    VLHE+++L + KK +++ +  L E + L  +F R+   +PGIFYL
Sbjct: 270 HLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYL 329

Query: 335 SLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMKT 362
           S K +T TV LR+GY+RG L+  + L   R ++  +M T
Sbjct: 330 SSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMNT 361

[Close]

BLAST of Carg25733 vs. TAIR 10
Match: AT2G39120.1 (Ubiquitin carboxyl-terminal hydrolase family protein )

HSP 1 Score: 181.8 bits (460), Expect = 1.3e-45
Identity = 115/344 (33.43%), Postives = 179/344 (52.03%), Query Frame = 0


Query: 25  QCRRIAKVRLKWVKNRSLDHI--IDTETDLKAASLLKDAINRSSTGFITAKSIADWPKLL 84
           Q R    V +KW ++   D+I  I   + LK+   LK+ I +     I   +I+   +  
Sbjct: 20  QKRTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQF 79

Query: 85  GLTIPVLRFIRRYPTLFHEFPHSRYANLPCFRLTDTALLLDQQQSSIHQIHESDTVERLC 144
            ++  +  F+R++P++F EF    Y NLP FRLT  A  LD+Q+  ++Q    D  +RL 
Sbjct: 80  DVSTKIAHFLRKFPSIFEEFVGPEY-NLPWFRLTPEATELDRQERVVYQTSADDLRDRLK 139

Query: 145 RVLMMMKNRAIPLQSLRPLEWDLGLPCGFERSLIPKYPDHFRLVKASNGDWCLRLMEWRE 204
           ++++M K+  +PL  ++ ++W LGLP  + +         FR V   +G   L +     
Sbjct: 140 KLILMSKDNVLPLSIVQGMKWYLGLPDDYLQFPDMNLDSSFRFVDMEDGVKGLAVDYNGG 199

Query: 205 EFAVSALQRSNESSELGDAYRQFKRGRTTLAFPYEFSEG------IWGTKEEFQKLPYIS 264
           +  +S LQ++      G+   +       + FP   S+G      I     EFQKLPY+S
Sbjct: 200 DKVLSVLQKNAMKKRRGEVSLE------EIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVS 259

Query: 265 PYESCRQIDPNSDLMEKRVVGVLHELLSLTLHKKTKRNYLRSLREELNLPHKFTRIFTRY 324
           PY+    +DP+SD+ EKRVVG LHELL L +    +R  L  L++   LP K  + F R+
Sbjct: 260 PYDDYSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERH 319

Query: 325 PGIFYLSLKCKTTTVSLREGYQRGKLVNPHPLTRLREKFYHVMK 361
           P IFYLS+K KT T  LRE Y+    V  HP+  +R+K+  +MK
Sbjct: 320 PQIFYLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMK 356

The following BLAST results are available for this feature:

BLAST of Carg25733 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033566.1	1.3e-278	100.00	Protein ROOT PRIMORDIUM DEFECTIVE 1, partial [Cucurbita argyrosperma subsp. argy...	[more]
KAG6603284.1	1.6e-223	95.80	Protein WHAT'S THIS FACTOR 9, mitochondrial, partial [Cucurbita argyrosperma sub...	[more]
XP_022928600.1	1.3e-222	96.05	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita moschata]	[more]
XP_023543563.1	1.5e-221	95.06	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_023543562.1	2.5e-221	94.81	protein WHAT'S THIS FACTOR 1 homolog [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25733 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZUZ6	1.8e-44	33.43	Protein WHAT'S THIS FACTOR 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=W...	[more]
Q65XL5	5.6e-38	30.42	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Oryza sativa subsp. japon...	[more]
B6TTV8	6.9e-36	30.24	Protein WHAT'S THIS FACTOR 1, chloroplastic OS=Zea mays OX=4577 GN=WTF1 PE=1 SV=...	[more]
A0MFS5	4.6e-32	27.06	Protein WHAT'S THIS FACTOR 1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3...	[more]
Q689D6	3.8e-26	32.74	Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana OX=3702 GN=RPD1 PE=1...	[more]

BLAST of Carg25733 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ES37	6.5e-223	96.05	protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114354...	[more]
A0A6J1EL68	2.7e-221	95.56	protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114355...	[more]
A0A6J1HXS6	1.7e-215	92.59	protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467211...	[more]
A0A6J1HVG3	2.5e-214	92.35	protein WHAT'S THIS FACTOR 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467212...	[more]
A0A6J1DTM9	2.1e-197	85.19	protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Momordica charantia OX=3673 GN=LOC1110230...	[more]

BLAST of Carg25733 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58520.1	7.8e-152	67.02	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT3G58520.2	7.8e-136	62.07	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT5G48040.1	3.5e-67	39.00	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT1G71850.1	2.5e-49	32.74	Ubiquitin carboxyl-terminal hydrolase family protein	[more]
AT2G39120.1	1.3e-45	33.43	Ubiquitin carboxyl-terminal hydrolase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021099	Plant organelle RNA recognition domain	PFAM	PF11955	PORR	coord: 37..362 e-value: 8.8E-107 score: 356.8
None	No IPR available	PANTHER	PTHR31476:SF10	OS04G0546100 PROTEIN	coord: 23..398
IPR045040	PORR family	PANTHER	PTHR31476	PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC	coord: 23..398

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25733-RA	Carg25733-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding