Carg25725 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25725
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr03: 1194913 .. 1197205 (+)
RNA-Seq ExpressionCarg25725
SyntenyCarg25725
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CAAAGAGGAATTAAAGAGAGAGAAAAAAATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAATCAATCATTAATCGTTTTAACTTTTTGTTCGAATTCCAAAGCCGATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTTGGATTGAGGTTAGTTTTCTTTTCTTTTAATCCCTTTCTTCAATTCCATTTCTTGATTTGTTTTTAACGTTCGTATTGATTTTGCCACTTTTGTGCCACCCCCAGAATTTATCATTTGAATTGATCGTCTGTTTCTGCAATTTGACTCGGAATTCTCAACTAGGGATATGGATTTTTTTTGTTTTTTTTGTAAGATTTTCTTCTGTTATTGTTCTTGGTTTTTGTGGGGTTCTGTTTTTCTTTCTGGAGACTTGTAAATGAGGTCTTGTTTTGTTTCCTTCCTTAGGTTTCGTGCAAATGTTGTTTCGTTGTTGAATATTGATTTTCTAATTCAGAAATGGTTTATCAATTTGTAATTTGTAAAAGAGGAAGAACAGGGTTTTGCATTCGTGCTGCTTGGTCTCGTTTCGTTCGATTTCAGTCCATTTTTTAGGGTTTTCGGTGGATGAATTTTGACTTAATCACATGGTTTTTGAAATTTGACTGAAATAGGGTTGTTCTGATGGATTCAAATGAGCCTATGATTTCATTAAGTGATTTATCTCCACAATTTTGAAGCATTTGATATGAACTGAAACTTTTTTGTAAGACTATGTTAGCGTTAATGCTTTGTTACTTTTCCTTTTATATTTCTCTTCCAAAACAAAATAATCGAGTTAAGTTAGCGTAGGATGTTTCGTTTTGTGTTCATGATTAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTTGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCCGCGCTACGAGCGCGCATCCGTTTTTTAGCTGGCTTCAAAGAAAGAAAAGCTGGCGCTCCTGCCCCTAACCTAGGTTGAGACCTTTCAAGATTCTTAGTCCAGCACACCCTGCAATCTTTCTAGCTAACGCCACTCTAATACGCCCTTATTAGATAGAGTCGATTTCCTCTTTTGTTAATGGACACTCTCTCAATTCTAAAAATTAAAAGAGGGGCAAATGAGTGGAAAAGGTTGAAATCTTTTCTTAATAAAATTTTGAATTTAAGATTGCCCTTCCTTTGTCTTGGCTCTACCTATGGTTCTTGGCTTATTCAGAAAATTAATGATTCTGGTGAGGGTGGCAGTTTGGGGTTAGAGGGACAGAAGAGAAAAATCTTGTTTACATTTATTTGGGTATTGAGAAAGCATAAAGAATAACTTAGGTCCCCAGAGATGATTCCAAGTTGAGATTATAGACAAACCGTAATATTGAGCGAGCTCCGTGTTATTTGGGATTTCACTATTGCTTTGGGTTTGGAAGGAATCTAGATTGCTTTATTTTATTTCATCAAGGTTTTTCAAGTAAAGAGTTCATCAAACTAAATAAATTTTGAAGTTGATCTTTCAGTATTTTGAAGCTTCTTTGCAAATGAATGCCTGGACGTGCACGTGCCTTGGCACAATCCAACTTTAAGCTAGGATGTTAAACTCATAGTTTTGATAAGCTAGCCTTGTTGGGTTTAGGTTCGGTAGTACGAGTTCACATGCTTGGACTATTCAATGGAATGGTTTGTAAAATCTCGAGGTTTGTGTAATATGTGTTTGTTTAAGATTAATAATATACAAACTTCACATGGAGTAGAAAAGGTGGGTTTTAAACCTTGAATTTTGTGTAGTTTGTAGGATTAGCGAACTTATAGCTTGGAATACGAAACTCCAAGTACCATACGCTCGAATTCTGTTAACTCAATGTTATATAAATCTAACTATGAGCTAGCGACCAATATCGGTTACTAAAGAATCTAGCAAATGGCCAGTAAGCATATATGTGTTGTTTCCAGTTCAGATTATAAGAAAATGAGGGTGTTGCTAAGTCCTGTATGTTATTAAGCATTGTTGATCATGTTTAGTTTTCGTTATCACCCGACTTTCGTTCAAATTATATCTAACAAATCTTCAAACAACACGAAACATTTCGTCTAACGTGTTTACTGATATGCCCTTTTCTTTTTTTTTTGTCTGGTTTAATAGGTTTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

mRNA sequence

CAAAGAGGAATTAAAGAGAGAGAAAAAAATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAATCAATCATTAATCGTTTTAACTTTTTGTTCGAATTCCAAAGCCGATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTTGGATTGAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTTGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCCGCGCTACGAGCGCGCATCCGTTTTTTAGCTGGCTTCAAAGAAAGAAAAGCTGGCGCTCCTGCCCCTAACCTAGGTTTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

Coding sequence (CDS)

ATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTTGGATTGAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTTGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCCGCGCTACGAGCGCGCATCCGTTTTTTAGCTGGCTTCAAAGAAAGAAAAGCTGGCGCTCCTGCCCCTAACCTAGGTTTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

Protein sequence

MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAKQAALRARIRFLAGFKERKAGAPAPNLGLNSWMSDGCHMVKHFQ
Homology
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BLAST of Carg25725 vs. NCBI nr
Match: KAG7033558.1 (hypothetical protein SDJN02_03280 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.6 bits (553), Expect = 4.9e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAK 60
           MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAK
Sbjct: 1   MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAK 60

Query: 61  QAALRARIRFLAGFKERKAGAPAPNLGLNSWMSDGCHMVKHFQ 104
           QAALRARIRFLAGFKERKAGAPAPNLGLNSWMSDGCHMVKHFQ
Sbjct: 61  QAALRARIRFLAGFKERKAGAPAPNLGLNSWMSDGCHMVKHFQ 103

The following BLAST results are available for this feature:
BLAST of Carg25725 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7033558.14.9e-53100.00hypothetical protein SDJN02_03280 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg25725 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25725 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25725 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25725-RACarg25725-RAmRNA