Carg25725 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25725
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr03: 1194913 .. 1197205 (+)
RNA-Seq Expression	Carg25725
Synteny	Carg25725

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGAGGAATTAAAGAGAGAGAAAAAAATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAATCAATCATTAATCGTTTTAACTTTTTGTTCGAATTCCAAAGCCGATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTTGGATTGAGGTTAGTTTTCTTTTCTTTTAATCCCTTTCTTCAATTCCATTTCTTGATTTGTTTTTAACGTTCGTATTGATTTTGCCACTTTTGTGCCACCCCCAGAATTTATCATTTGAATTGATCGTCTGTTTCTGCAATTTGACTCGGAATTCTCAACTAGGGATATGGATTTTTTTTGTTTTTTTTGTAAGATTTTCTTCTGTTATTGTTCTTGGTTTTTGTGGGGTTCTGTTTTTCTTTCTGGAGACTTGTAAATGAGGTCTTGTTTTGTTTCCTTCCTTAGGTTTCGTGCAAATGTTGTTTCGTTGTTGAATATTGATTTTCTAATTCAGAAATGGTTTATCAATTTGTAATTTGTAAAAGAGGAAGAACAGGGTTTTGCATTCGTGCTGCTTGGTCTCGTTTCGTTCGATTTCAGTCCATTTTTTAGGGTTTTCGGTGGATGAATTTTGACTTAATCACATGGTTTTTGAAATTTGACTGAAATAGGGTTGTTCTGATGGATTCAAATGAGCCTATGATTTCATTAAGTGATTTATCTCCACAATTTTGAAGCATTTGATATGAACTGAAACTTTTTTGTAAGACTATGTTAGCGTTAATGCTTTGTTACTTTTCCTTTTATATTTCTCTTCCAAAACAAAATAATCGAGTTAAGTTAGCGTAGGATGTTTCGTTTTGTGTTCATGATTAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTTGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCCGCGCTACGAGCGCGCATCCGTTTTTTAGCTGGCTTCAAAGAAAGAAAAGCTGGCGCTCCTGCCCCTAACCTAGGTTGAGACCTTTCAAGATTCTTAGTCCAGCACACCCTGCAATCTTTCTAGCTAACGCCACTCTAATACGCCCTTATTAGATAGAGTCGATTTCCTCTTTTGTTAATGGACACTCTCTCAATTCTAAAAATTAAAAGAGGGGCAAATGAGTGGAAAAGGTTGAAATCTTTTCTTAATAAAATTTTGAATTTAAGATTGCCCTTCCTTTGTCTTGGCTCTACCTATGGTTCTTGGCTTATTCAGAAAATTAATGATTCTGGTGAGGGTGGCAGTTTGGGGTTAGAGGGACAGAAGAGAAAAATCTTGTTTACATTTATTTGGGTATTGAGAAAGCATAAAGAATAACTTAGGTCCCCAGAGATGATTCCAAGTTGAGATTATAGACAAACCGTAATATTGAGCGAGCTCCGTGTTATTTGGGATTTCACTATTGCTTTGGGTTTGGAAGGAATCTAGATTGCTTTATTTTATTTCATCAAGGTTTTTCAAGTAAAGAGTTCATCAAACTAAATAAATTTTGAAGTTGATCTTTCAGTATTTTGAAGCTTCTTTGCAAATGAATGCCTGGACGTGCACGTGCCTTGGCACAATCCAACTTTAAGCTAGGATGTTAAACTCATAGTTTTGATAAGCTAGCCTTGTTGGGTTTAGGTTCGGTAGTACGAGTTCACATGCTTGGACTATTCAATGGAATGGTTTGTAAAATCTCGAGGTTTGTGTAATATGTGTTTGTTTAAGATTAATAATATACAAACTTCACATGGAGTAGAAAAGGTGGGTTTTAAACCTTGAATTTTGTGTAGTTTGTAGGATTAGCGAACTTATAGCTTGGAATACGAAACTCCAAGTACCATACGCTCGAATTCTGTTAACTCAATGTTATATAAATCTAACTATGAGCTAGCGACCAATATCGGTTACTAAAGAATCTAGCAAATGGCCAGTAAGCATATATGTGTTGTTTCCAGTTCAGATTATAAGAAAATGAGGGTGTTGCTAAGTCCTGTATGTTATTAAGCATTGTTGATCATGTTTAGTTTTCGTTATCACCCGACTTTCGTTCAAATTATATCTAACAAATCTTCAAACAACACGAAACATTTCGTCTAACGTGTTTACTGATATGCCCTTTTCTTTTTTTTTTGTCTGGTTTAATAGGTTTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

mRNA sequence

CAAAGAGGAATTAAAGAGAGAGAAAAAAATTATAATGGCGGTCCCGCAGCGGTGGTGAAAGCAATTGCACAATTCCAACGATTCATCGATAATCAATCATTAATCGTTTTAACTTTTTGTTCGAATTCCAAAGCCGATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTTGGATTGAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTTGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCCGCGCTACGAGCGCGCATCCGTTTTTTAGCTGGCTTCAAAGAAAGAAAAGCTGGCGCTCCTGCCCCTAACCTAGGTTTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

Coding sequence (CDS)

ATGAGGTATGGGCTAATCCCAGTTCTGGTCCCCGTTGGATTGAGACATCTTTTGCTAGAGTTTGATTATAATGGGCTCTGTATGCAACCTGTAGCTGGATTGAATCCTTTGCGATGCAAATGCCCTCTTCCTTCTCCCAACCCAACTAAGGTGAAACACCTACTCCTAACAAAAGCGAAGCAAGCCGCGCTACGAGCGCGCATCCGTTTTTTAGCTGGCTTCAAAGAAAGAAAAGCTGGCGCTCCTGCCCCTAACCTAGGTTTGAACTCATGGATGAGTGATGGCTGCCATATGGTGAAGCATTTCCAATAA

Protein sequence

MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAKQAALRARIRFLAGFKERKAGAPAPNLGLNSWMSDGCHMVKHFQ

Homology

[Close]

BLAST of Carg25725 vs. NCBI nr
Match: KAG7033558.1 (hypothetical protein SDJN02_03280 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 217.6 bits (553), Expect = 4.9e-53
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAK 60
           MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAK
Sbjct: 1   MRYGLIPVLVPVGLRHLLLEFDYNGLCMQPVAGLNPLRCKCPLPSPNPTKVKHLLLTKAK 60

Query: 61  QAALRARIRFLAGFKERKAGAPAPNLGLNSWMSDGCHMVKHFQ 104
           QAALRARIRFLAGFKERKAGAPAPNLGLNSWMSDGCHMVKHFQ
Sbjct: 61  QAALRARIRFLAGFKERKAGAPAPNLGLNSWMSDGCHMVKHFQ 103

The following BLAST results are available for this feature:

BLAST of Carg25725 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7033558.1	4.9e-53	100.00	hypothetical protein SDJN02_03280 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Carg25725 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25725 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25725 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25725-RA	Carg25725-RA	mRNA