Carg25672 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25672
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transmembrane protein
Location	Carg_Chr04: 1442565 .. 1442942 (-)
RNA-Seq Expression	Carg25672
Synteny	Carg25672

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGGTGGTGGTCATCTCTCTGCCGTTGATTCTCTTCTGCTTCTTGCTTGGTTTTGGCTGTTACTTTCTAGGCAGAGCTAAAGGGAGACAGGACATTCGGACTAATGCCCAGGTCTTTGGGGTGCCGGCGCCACCTCCCGGTAGCGGTCTCGCCCATCCTCCGCCACCGCCGGAGCCGCTTTTCAAACCTGATAATTCAGCCCATGTTTGATTAGTAATCAGATCCAAGTTCAATTCTTCACTGTACTGTCTCTGTCTACTGGGTTCTGTTTTGGGGTAAATTCTGTACTGTTAGGATGAACTTCAATACTCCATGAATCGTTTTGCTGTTATTGTGGCTGTTCTATGGGTGTTTCTGCATTCAATCGAGTGA

mRNA sequence

ATGGGTATGGTGGTGGTCATCTCTCTGCCGTTGATTCTCTTCTGCTTCTTGCTTGGTTTTGGCTGTTACTTTCTAGGCAGAGCTAAAGGGAGACAGGACATTCGGACTAATGCCCAGGTCTTTGGGGTGCCGGCGCCACCTCCCGGTAGCGGTCTCGCCCATCCTCCGCCACCGCCGGAGCCGCTTTTCAAACCTGATAATTCAGCCCATGATGAACTTCAATACTCCATGAATCGTTTTGCTGTTATTGTGGCTGTTCTATGGGTGTTTCTGCATTCAATCGAGTGA

Coding sequence (CDS)

ATGGGTATGGTGGTGGTCATCTCTCTGCCGTTGATTCTCTTCTGCTTCTTGCTTGGTTTTGGCTGTTACTTTCTAGGCAGAGCTAAAGGGAGACAGGACATTCGGACTAATGCCCAGGTCTTTGGGGTGCCGGCGCCACCTCCCGGTAGCGGTCTCGCCCATCCTCCGCCACCGCCGGAGCCGCTTTTCAAACCTGATAATTCAGCCCATGATGAACTTCAATACTCCATGAATCGTTTTGCTGTTATTGTGGCTGTTCTATGGGTGTTTCTGCATTCAATCGAGTGA

Protein sequence

MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPEPLFKPDNSAHDELQYSMNRFAVIVAVLWVFLHSIE

Homology

[Close]

BLAST of Carg25672 vs. NCBI nr
Match: KAG7030778.1 (hypothetical protein SDJN02_04815, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.9 bits (494), Expect = 3.2e-46
Identity = 95/95 (100.00%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE
Sbjct: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60

Query: 61 PLFKPDNSAHDELQYSMNRFAVIVAVLWVFLHSIE 96
          PLFKPDNSAHDELQYSMNRFAVIVAVLWVFLHSIE
Sbjct: 61 PLFKPDNSAHDELQYSMNRFAVIVAVLWVFLHSIE 95

[Close]

BLAST of Carg25672 vs. NCBI nr
Match: KAG6600108.1 (hypothetical protein SDJN03_05341, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 190.7 bits (483), Expect = 6.0e-45
Identity = 92/95 (96.84%), Postives = 95/95 (100.00%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE
Sbjct: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60

Query: 61 PLFKPDNSAHDELQYSMNRFAVIVAVLWVFLHSIE 96
          PLFKPDNSAHD+L+YSMNRFAVIVAVLWVFLHSI+
Sbjct: 61 PLFKPDNSAHDQLKYSMNRFAVIVAVLWVFLHSIK 95

[Close]

BLAST of Carg25672 vs. NCBI nr
Match: XP_022942625.1 (uncharacterized protein LOC111447607 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 8.4e-31
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MGMV+VISLPLILFCFLLGFGCYF+GRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE
Sbjct: 1  MGMVLVISLPLILFCFLLGFGCYFIGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60

Query: 61 PLFKPDNSAH 71
          PLFKPDNSAH
Sbjct: 61 PLFKPDNSAH 70

[Close]

BLAST of Carg25672 vs. NCBI nr
Match: XP_022988565.1 (uncharacterized protein LOC111485766 [Cucurbita maxima])

HSP 1 Score: 139.8 bits (351), Expect = 1.2e-29
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGS LAHPPPPPE
Sbjct: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSRLAHPPPPPE 60

Query: 61 PLFKPDNSAH 71
          PLFKPDNSA+
Sbjct: 61 PLFKPDNSAN 70

[Close]

BLAST of Carg25672 vs. NCBI nr
Match: XP_022139122.1 (uncharacterized protein LOC111010108 [Momordica charantia])

HSP 1 Score: 119.4 bits (298), Expect = 1.7e-23
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MG+VVVISLPLILFC LLGFGCYF+GRAKGRQDIRTNAQVFGVP PPPGS  AH PPPP 
Sbjct: 1  MGLVVVISLPLILFCLLLGFGCYFIGRAKGRQDIRTNAQVFGVPTPPPGSAAAHSPPPP- 60

Query: 61 PLFKPDNSAH 71
          PLFK DNSA+
Sbjct: 61 PLFKLDNSAN 69

[Close]

BLAST of Carg25672 vs. ExPASy TrEMBL
Match: A0A6J1FWM8 (uncharacterized protein LOC111447607 OS=Cucurbita moschata OX=3662 GN=LOC111447607 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.0e-31
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MGMV+VISLPLILFCFLLGFGCYF+GRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE
Sbjct: 1  MGMVLVISLPLILFCFLLGFGCYFIGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60

Query: 61 PLFKPDNSAH 71
          PLFKPDNSAH
Sbjct: 61 PLFKPDNSAH 70

[Close]

BLAST of Carg25672 vs. ExPASy TrEMBL
Match: A0A6J1JJX6 (uncharacterized protein LOC111485766 OS=Cucurbita maxima OX=3661 GN=LOC111485766 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 5.8e-30
Identity = 68/70 (97.14%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGS LAHPPPPPE
Sbjct: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSRLAHPPPPPE 60

Query: 61 PLFKPDNSAH 71
          PLFKPDNSA+
Sbjct: 61 PLFKPDNSAN 70

[Close]

BLAST of Carg25672 vs. ExPASy TrEMBL
Match: A0A6J1CD47 (uncharacterized protein LOC111010108 OS=Momordica charantia OX=3673 GN=LOC111010108 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.2e-24
Identity = 60/70 (85.71%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MG+VVVISLPLILFC LLGFGCYF+GRAKGRQDIRTNAQVFGVP PPPGS  AH PPPP 
Sbjct: 1  MGLVVVISLPLILFCLLLGFGCYFIGRAKGRQDIRTNAQVFGVPTPPPGSAAAHSPPPP- 60

Query: 61 PLFKPDNSAH 71
          PLFK DNSA+
Sbjct: 61 PLFKLDNSAN 69

[Close]

BLAST of Carg25672 vs. ExPASy TrEMBL
Match: A0A5A7SXY6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00410 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MG+VVVISLPLI FC LLGFGCYFLGRAKGRQDIRTNAQ+FGVP PPPGSG AH P   +
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSQQ 60

Query: 61 PLFKPDNSAH 71
          P+FKP+N+ +
Sbjct: 61 PVFKPENTTN 70

[Close]

BLAST of Carg25672 vs. ExPASy TrEMBL
Match: A0A1S3BED6 (uncharacterized protein LOC103488752 OS=Cucumis melo OX=3656 GN=LOC103488752 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.5e-22
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MG+VVVISLPLI FC LLGFGCYFLGRAKGRQDIRTNAQ+FGVP PPPGSG AH P   +
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGRAKGRQDIRTNAQIFGVPTPPPGSGAAHSPSSQQ 60

Query: 61 PLFKPDNSAH 71
          P+FKP+N+ +
Sbjct: 61 PVFKPENTTN 70

[Close]

BLAST of Carg25672 vs. TAIR 10
Match: AT1G31335.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to 34 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 94.4 bits (233), Expect = 5.4e-20
Identity = 47/68 (69.12%), Postives = 56/68 (82.35%), Query Frame = 0


Query: 1  MGMVVVISLPLILFCFLLGFGCYFLGRAKGRQDIRTNAQVFGVPAPPPGSGLAHPPPPPE 60
          MG+VVVISLPLI FC LLGFGCYFLG+++GR++IRTN QV+G PAPPPG+ +A   PP  
Sbjct: 1  MGLVVVISLPLIFFCLLLGFGCYFLGKSRGRREIRTNPQVYGAPAPPPGA-IAASSPPLS 60

Query: 61 PLFKPDNS 69
          P  KPDNS
Sbjct: 61 PHAKPDNS 67

The following BLAST results are available for this feature:

BLAST of Carg25672 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7030778.1	3.2e-46	100.00	hypothetical protein SDJN02_04815, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6600108.1	6.0e-45	96.84	hypothetical protein SDJN03_05341, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022942625.1	8.4e-31	97.14	uncharacterized protein LOC111447607 [Cucurbita moschata]	[more]
XP_022988565.1	1.2e-29	97.14	uncharacterized protein LOC111485766 [Cucurbita maxima]	[more]
XP_022139122.1	1.7e-23	85.71	uncharacterized protein LOC111010108 [Momordica charantia]	[more]

BLAST of Carg25672 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25672 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FWM8	4.0e-31	97.14	uncharacterized protein LOC111447607 OS=Cucurbita moschata OX=3662 GN=LOC1114476...	[more]
A0A6J1JJX6	5.8e-30	97.14	uncharacterized protein LOC111485766 OS=Cucurbita maxima OX=3661 GN=LOC111485766...	[more]
A0A6J1CD47	8.2e-24	85.71	uncharacterized protein LOC111010108 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A5A7SXY6	1.5e-22	77.14	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3BED6	1.5e-22	77.14	uncharacterized protein LOC103488752 OS=Cucumis melo OX=3656 GN=LOC103488752 PE=...	[more]

BLAST of Carg25672 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31335.1	5.4e-20	69.12	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..68
None	No IPR available	PANTHER	PTHR33727	OS07G0446900 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33727:SF17	BNAANNG31340D PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25672-RA	Carg25672-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane