Carg25638 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25638
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr01: 11320621 .. 11322734 (-)
RNA-Seq ExpressionCarg25638
SyntenyCarg25638
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAATCGGAGGAAGAGAGAGCAGAATAATTGAAAGAAGTTTCTGGCCGCGTCTCGGTGATGAAAAACAGAGGTAATTGAACTTCGTTTCAGCCTTTTAATTGTATGAGTAGTTTGGTCTTGACTATTCTGTTCTGAGTTCGGAATTGTTAGGGTTCAACCGGCTATTCCGATTTAGGGGTTAATTGGAGAAATTCAGAGGTTGATCAAAGGATTGTTCGTTTTTTTTCGTTTTTTTTTTTTTTTTTTTGCCTATTACGGATACGATTTGTATTTTTCGTGGTTTCGATTACGGAGGATTCGGGATTTTCGATTACAGAGGTTACGTAATTATGATTTTGGACTCTTCGTTTTATTCCTCGTCATATTCTATCTCTTCTCTACGTGAGGAGGCAGGGGATGAACCTGATATTCAAATTTATGTGTTGGCAGAAGCAGAGGAGGACGGCGAACTCTGTACGTCATTGAGATTGGTTATATGATAACAGAGAGGGGAAGAACGCAGCAGTTGCTCTTGATGAAGTGATTGCTGGGGCAAAATTAAAGCAATTGGTCCTGTCATTGTGGCCGGTGGGACTTTGGCATCTGCTAGGAAGACTGGTATGATTCCAAGCCCTATGCTGTAATGTTGAATTTTTTGTTGATGTTTTTGGGTGTCTGTGAAGTAATTGTTGTTTTTATTTATTTATTATTGTTTGTTGGCTGTGAAGTTGTGTATTGTAGCTTTAGCAAACATTGCAGTCAAATACACAAACAGAGCAGGGATTATGTGATGTTATATTTTTCAGTATTTGCTTGTCAAAACCATAAGTTCTGGAAAGTATGATTTGATGTACTCTTATTTTTTATTTGTATGTGATTTCAAACGTAAGTGAAGTGTTTTACTTAAATTTCTGCACTAATTAGTTCTCGGGCCCTAATAGTTGAGGTGAGTGGCTGCTTCAAAGCTAGCCAGCCAATACATTTGAGACCAAGTTTGAGGTTATCTTGTTGTTTTATGCATTTATGCACACACTTACAGATTTTCAAACTATTTATTTTTTTTATGATTGATGAAGTTTGTTAGGTTTCATTTTGCTCTTCATCTATTGAATTTTTGAGAATAAGCTTTTTGGTTTGCTAACATTCCCGTAGGTCATAATCATGAACGATATGAGAGACTGATTTGAGCCCAATGCAGAATGATAGCAATCAATTTGTTGATATCGAAGGTACTTTAAACATTTCTTTGTCTAACTTAATGATTTGTCTGTATTGAAGATAAACGCATAATTATCTTTTTCATTGATAATATCATGCAGGACGGTCTGGTTCATGTAAAGTTTGTAGCAAACAGTTTTAGGTGCATAAAATATAGCCACTCGATCCACAGAGGTAAGCCATTGTTTTTACATCACTTTTACCATTCCAATTACATAGAAAAAATGTCCTCCCAAGGGAGTGAACGTAGGCAATGAAAGAAAGCATCCAAAAATAATTCTAGTGAACAAAATAAAATGATCCTGTGGTCAAAAGAAGCTAAAGGATCCAGTGGTCACTTGACAAGGTGCAAAAATGTTTGAATGGGCTTTGGAAATTGAATGACACTATAAAATTATTCACGATAAACCATGTTGGATTGTTTTGTGCATATGCAATAAAATGATTTAATTCTTGATGCAAAATTTTCAAAGTTGATATTTGGTGCCTATTTAACTCCGTGCATGAAAGTTATAGGTTGGCCTACCAAATTTGGATCATGCAATATTATTTTAGATTATTCTATTCATACAATTTAATTTATAAGAACAACAAGCTAGAATGAGTTCTATTTACACGTCTAACTTTACCAAATGTTCACTTTCAGTGGTTTCTAATTATCCATATCTCATCAGTTTGACATTATTTCTCATATTTCATTTGCTAATGCTGAAGGTTTTGGTTAGTAACTATGTTGTGAAAATTTCAGATGGAAATGGAGGATGTAGATGAAGACAATAAAGTTGAGGTCATTCTACAAGGAATCCAACTCCGTTTGCTACTTTCAACGCTCCATCATGTAAGTAATTTTCTACTTGACATCATGAACTACCATATATGTGACTGCAATGATATGGTCCTAATAAGGTTAGGTTAC

mRNA sequence

GCAATCGGAGGAAGAGAGAGCAGAATAATTGAAAGAAGTTTCTGGCCGCGTCTCGGTGATGAAAAACAGAGAGAGGGGAAGAACGCAGCAGTTGCTCTTGATGAAGTGATTGCTGGGGCAAAATTAAAGCAATTGGTCCTGTCATTGTGGCCGGTGGGACTTTGGCATCTGCTAGGAAGACTGATGGAAATGGAGGATGTAGATGAAGACAATAAAGTTGAGGTCATTCTACAAGGAATCCAACTCCGTTTGCTACTTTCAACGCTCCATCATGTAAGTAATTTTCTACTTGACATCATGAACTACCATATATGTGACTGCAATGATATGGTCCTAATAAGGTTAGGTTAC

Coding sequence (CDS)

GCAATCGGAGGAAGAGAGAGCAGAATAATTGAAAGAAGTTTCTGGCCGCGTCTCGGTGATGAAAAACAGAGAGAGGGGAAGAACGCAGCAGTTGCTCTTGATGAAGTGATTGCTGGGGCAAAATTAAAGCAATTGGTCCTGTCATTGTGGCCGGTGGGACTTTGGCATCTGCTAGGAAGACTGATGGAAATGGAGGATGTAGATGAAGACAATAAAGTTGAGGTCATTCTACAAGGAATCCAACTCCGTTTGCTACTTTCAACGCTCCATCATGTAAGTAATTTTCTACTTGACATCATGAACTACCATATATGTGACTGCAATGATATGGTCCTAATAAGGTTAGGTTAC

Protein sequence

AIGGRESRIIERSFWPRLGDEKQREGKNAAVALDEVIAGAKLKQLVLSLWPVGLWHLLGRLMEMEDVDEDNKVEVILQGIQLRLLLSTLHHVSNFLLDIMNYHICDCNDMVLIRLGY
Homology
[Close]
BLAST of Carg25638 vs. NCBI nr
Match: KAG7037605.1 (hypothetical protein SDJN02_01234, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236.5 bits (602), Expect = 1.2e-58
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   AIGGRESRIIERSFWPRLGDEKQREGKNAAVALDEVIAGAKLKQLVLSLWPVGLWHLLGR 60
           AIGGRESRIIERSFWPRLGDEKQREGKNAAVALDEVIAGAKLKQLVLSLWPVGLWHLLGR
Sbjct: 1   AIGGRESRIIERSFWPRLGDEKQREGKNAAVALDEVIAGAKLKQLVLSLWPVGLWHLLGR 60

Query: 61  LMEMEDVDEDNKVEVILQGIQLRLLLSTLHHVSNFLLDIMNYHICDCNDMVLIRLGY 118
           LMEMEDVDEDNKVEVILQGIQLRLLLSTLHHVSNFLLDIMNYHICDCNDMVLIRLGY
Sbjct: 61  LMEMEDVDEDNKVEVILQGIQLRLLLSTLHHVSNFLLDIMNYHICDCNDMVLIRLGY 117

[Close]
BLAST of Carg25638 vs. NCBI nr
Match: XP_022940726.1 (uncharacterized protein LOC111446232 [Cucurbita moschata])

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-17
Identity = 52/78 (66.67%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 1   AIGGRESRIIERSFWPRLGDEKQRE-----------------GKNAAVALDEVIAGAKLK 60
           AIGGRESRIIERSFWPRLGDEKQR                   +   +ALDEVI GAKLK
Sbjct: 83  AIGGRESRIIERSFWPRLGDEKQRSRGGRRTLYVIEIGYMITERGRTLALDEVIVGAKLK 142

Query: 61  QLVLSLWPVGLWHLLGRL 62
           QLVLSLWPVG WHLLGRL
Sbjct: 143 QLVLSLWPVGFWHLLGRL 160

[Close]
BLAST of Carg25638 vs. NCBI nr
Match: KAG7011932.1 (hypothetical protein SDJN02_26840, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 1.3e-09
Identity = 41/56 (73.21%), Postives = 44/56 (78.57%), Query Frame = 0 

Query: 24  REGKNAAVALDEVIAGAKLKQLVLSLWPVGLWHLLGRLMEMEDVDEDNKVEVILQG 80
           REGKN AVALDEVIA    KQLVLSL PVG  HLLG LME+E++D DNK E ILQG
Sbjct: 107 REGKNNAVALDEVIAWTTEKQLVLSLRPVGFSHLLGILMEVENMDGDNKDEGILQG 162

[Close]
BLAST of Carg25638 vs. NCBI nr
Match: KAG7012279.1 (hypothetical protein SDJN02_25031, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 65.1 bits (157), Expect = 4.6e-07
Identity = 49/91 (53.85%), Postives = 54/91 (59.34%), Query Frame = 0 

Query: 1   AIGGRESRIIERSFWPRLGDEKQ-----------REGKNAAVALDEVIAGAKLKQLVLSL 60
           AIGGRESR IERS  P  GDEK            R  +N A ALDEVI  AK KQLVL  
Sbjct: 67  AIGGRESR-IERSLSPDPGDEKYSRLFRFRSLLWRTSENKAAALDEVITWAKEKQLVL-- 126

Query: 61  WPVGLWHLLGRL-----MEMEDVDEDNKVEV 76
             +G  +LLG L     MEMED+D D+KVEV
Sbjct: 127 --LGFSNLLGILDGPVHMEMEDIDGDDKVEV 152

[Close]
BLAST of Carg25638 vs. NCBI nr
Match: KAG7031202.1 (hypothetical protein SDJN02_05242 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 55.8 bits (133), Expect = 2.8e-04
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 62  MEMEDVDEDNKVEVILQGIQLRLLLSTLHHVSNFLLDIMNYHICDCNDMVLIRLG 117
           MEMED++ DNKVE ILQGI+LRLLL+TLH V +F+           N +VLIRLG
Sbjct: 1   MEMEDMEGDNKVEGILQGIKLRLLLTTLHQVRSFIFG---------NVVVLIRLG 46

[Close]
BLAST of Carg25638 vs. ExPASy TrEMBL
Match: A0A6J1FJ97 (uncharacterized protein LOC111446232 OS=Cucurbita moschata OX=3662 GN=LOC111446232 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.8e-17
Identity = 52/78 (66.67%), Postives = 54/78 (69.23%), Query Frame = 0 

Query: 1   AIGGRESRIIERSFWPRLGDEKQRE-----------------GKNAAVALDEVIAGAKLK 60
           AIGGRESRIIERSFWPRLGDEKQR                   +   +ALDEVI GAKLK
Sbjct: 83  AIGGRESRIIERSFWPRLGDEKQRSRGGRRTLYVIEIGYMITERGRTLALDEVIVGAKLK 142

Query: 61  QLVLSLWPVGLWHLLGRL 62
           QLVLSLWPVG WHLLGRL
Sbjct: 143 QLVLSLWPVGFWHLLGRL 160

The following BLAST results are available for this feature:
BLAST of Carg25638 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037605.11.2e-58100.00hypothetical protein SDJN02_01234, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022940726.13.8e-1766.67uncharacterized protein LOC111446232 [Cucurbita moschata][more]
KAG7011932.11.3e-0973.21hypothetical protein SDJN02_26840, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7012279.14.6e-0753.85hypothetical protein SDJN02_25031, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7031202.12.8e-0458.18hypothetical protein SDJN02_05242 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of Carg25638 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25638 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FJ971.8e-1766.67uncharacterized protein LOC111446232 OS=Cucurbita moschata OX=3662 GN=LOC1114462... [more]
BLAST of Carg25638 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25638-RACarg25638-RAmRNA