Carg25613 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25613
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionheterogeneous nuclear ribonucleoprotein 1-like
LocationCarg_Chr18: 5259781 .. 5263201 (+)
RNA-Seq ExpressionCarg25613
SyntenyCarg25613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTAAGTTTTTTGAATTCTTCTTTTGATTTTGCTAATAAATATGCTCATGGAAGGATCATGGTTTTCCTGATTGTTCTTTGGTGTTCTTCATGATTGAAACTTGTCACAACTCTTCTTACATTTACATTTTTTTCTGAGTTCAACAACTCGAGGATGAGAATTTGAACCTCTTGTTGAGGATTGTTGCTGAGTTTATAAGTAAGGAATACATCTCCATTAATATGAGGCCGTTTTGGGAAACCAAAAAGCAAGGTTACGAGAGCTTATACTCATACCATACCATTGTGGAGGTCTGGGATTCCTACCATGGTATCAAAGTCATGCCCTTAACTTAGCCATGTGAATAGAATTCTCAAATGTCGAATAAAGAAGTTGTGAGCCTCAAAGGTGTAGTCAAAAGTGACTCAAGTGGTGTGTCCCACGTTGGCTAATTTAGGGGTTTATAAGTAAGGAATACATCTCCATTAGTACGAGGCCTTTTGGGGCAACCAAATAGTGGACAATCATACCATTGTGGAGAGTCGTGGTTCCTAACACTAGTTAACGTCGAATCACTTTTGTTTTGAAAAACATATAAACTATAATTTTCCTTTGGAGCTTTGGATGGGAAGATTTGGCTGTCTGCATTTTATCAGGGTGAATTTTGTTTCATGTGGCTGTTCATATTTTTGTGGAAGTACAATGCCGCCTGCATTTGCCCCGAATTTCAATCGTTTCGGGAACCGATTGTTTATACATGTTCTAGAAAAGGTAATAAGCACGATGACAGTAAAGGAATTTATTTGCTCGAAAAAAAGGTTTGAAACTAGTTCAAGTGAGCATAACTCAATGGTACTTAGCTATACCCTCGACGGAGAAAGGACATCGGAAGAATTGAAACTCAGATTTGTGAAAATTCGGGGGCTCGATATCTTATGGAGTACGTGGATGCACGGACATTAGGATTTACATGTGATGTTCACCGCTTATATTAAAACGATACATTTTGTTGCGTCAAGATATATCTATTTGTATCACAATTAGAGTAAAGTTTATCATGTTCATGTTTCGATATCCATTTTTTTGTTTTAGGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTTAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGCTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTCAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAACGCCTCGCACCTGAGGACATTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACACGGGTTCTTCTCCATTCAATGGTGCTGGTAACGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCAGCTTCAGATGTTATTAGTAGAAACAATGCTTCTGGTTATACTGTTGGATATGGTGTTTCTAATACACAGTCGAATAGAGGTGAATCTCTCTCCCTCTCTTTCCTTCTTTTATTCTCTTTCCTTCTTTTATTCTCTTTCCTTCTTTTATTCTCTTTCCTTCTTTTATCGTCGTTACATGTGAGATCCCACATCGGTTGGGGAGGAGAACGAAACACTCTTTATAAAAGTGTGGAAACCTCTCCCTAGTAGACATGTTTTAAAAACCTTGAGGGTAAGTTCGAAGGGGAAATCCCAAAGAGGACAATATCTGCTAGCGGTGCATTACATCTCTACAAACATTAGATCTTCGAGCTTATTTATATCAGTTTAAGCATGATTAAAACGCAACGACATTACTTGAACAAGATCCGTTTATGAATGGTAAAATGTTTGTTTGATTCAGGAATTGCTGCTTAGGAAGAAGAAGATAGAAGCAACAGAAATCAAGAGTTTTATAATAGTAGGTGATGATGTTTTTGGTAATTGTGATACACTCCTCCTCCTCCGCCCCTTCCTCCTCCGCCTCCTCCGCCCCCTCCTCCGCCTCCTCCTCCCATATGACGATATGATACTGTGAGAGCTAATTTGTTTTCTGTTTTATGAAGTGTCCCATAAAAGAAAGCAGGTTCCAGAGGGTTTGGTTTTTGGGTTGAGCTTGAAAATATAGGTCTTTTCTTCCTTTCTTTACTTGTAATTTGATTTGATTGATATGTATAATTGGATTGTGGGTAAGGTATGATCATACGTTACTCCGACAAAGAAACGGTGTCACACGAACGAATCGACATCATATTTTTTCTTCTTTTCTTTGGTTTCGGGTTCGTTTTAGAACAACTCATTCAGGCTTTCTTCTTGTTGTTTCATCTCTTGATATTATCATTAGCGGTTCTGGGTTTTTACTTCTCATGTGATTGATTGTATGAAACTGAGGTTCATTCATTTAGAGATATATCATACTCTCCACCTACCTTCCTTCCAA

mRNA sequence

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTTAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGCTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTCAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAACGCCTCGCACCTGAGGACATTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACACGGGTTCTTCTCCATTCAATGGTGCTGGTAACGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCAGCTTCAGATGAATTGCTGCTTAGGAAGAAGAAGATAGAAGCAACAGAAATCAAGAGTTTTATAATAGTAGGTGATGATGTTTTTGGTAATTGTGATACACTCCTCCTCCTCCGCCCCTTCCTCCTCCGCCTCCTCCGCCCCCTCCTCCGCCTCCTCCTCCCATATGACGATATGATACTGTGAGAGCTAATTTGTTTTCTGTTTTATGAAGTGTCCCATAAAAGAAAGCAGGTTCCAGAGGGTTTGGTTTTTGGGTTGAGCTTGAAAATATAGGTCTTTTCTTCCTTTCTTTACTTGTAATTTGATTTGATTGATATGTATAATTGGATTGTGGGTAAGGTATGATCATACGTTACTCCGACAAAGAAACGGTGTCACACGAACGAATCGACATCATATTTTTTCTTCTTTTCTTTGGTTTCGGGTTCGTTTTAGAACAACTCATTCAGGCTTTCTTCTTGTTGTTTCATCTCTTGATATTATCATTAGCGGTTCTGGGTTTTTACTTCTCATGTGATTGATTGTATGAAACTGAGGTTCATTCATTTAGAGATATATCATACTCTCCACCTACCTTCCTTCCAA

Coding sequence (CDS)

AGTGGGCTCATGGATCCTGGCAAGCTTTTTATTGGGGGTATTTCGTGGGACACAGATGAAGATCGACTTAAACAGTATTTTCAAACCTATGGAGAAGTGGTGGAGGTGATGATCATGAGGGATCGGAACACTGGCCGTGCTCGTGGCTTCGGTTTCGTCGTGTTTTCTGACCCTGTTGTTGCAGCTAGAGTTGTATTGGAGAAGCATGTTATTGATGGAAGAACTGTTGAAGCAAAGAAGGCTGTTCCTCGAGACGATCAGAACATTTTGAGCAGGAACAATACCGGTATCCTTGGGTCACCTGGCCCGACTCGCACAAAGAAGATATTTGTAGGGGGTTTGGCATCAACGGTTACGGAGAGTGACTTTAAAAAATATTTTGATCAGTTTGGAACGATCACAGATGCCGTGGTGATGTATGATCACAATACTCAGAGACCGAGAGGCTTTGGATTTATCACGTACGAGTCGGAGGAATCGGTGGAGAAAGTGTTATACAAAACATTTCATGAACTCAATGGTAAAATGGTTGAGGTTAAGAGAGCTGTTCCAAAAGAATTATCACCAGTGCCAAATCGAAATCAATTAGGTGCATACCCTTACAGTTTTGGTAGAGTTGGTAGCTATTTAAGTGGTTATAATCAAGGATATAACACAACCTCAGTTGGGGGATATGGACTGAGATCTGATGGTAGGTTTAGTCCTGTTACGGTCGGTCGGGGTGGGCTGTCTCCAATTAGTCCTGGCTATGGAATAGGTCTAAATCTCGACGCAGGGTTGAACCTCAACTATGGGACCGGTCCCAATGGCAGTTCTAACCTCATTTACGGACGGGTAATGAGTTCTTCCTATGGTGGAAATTTAAATAGGTATGGTAGTCCAAGCCCCATGGTATATGGCGGAGGCAGTGGAGGTAATGGTTCTATTTTAAGCTCGTCGGTTCAGAATCTGTGGGGAAATGTCGGTAACTCGGCTGGTACGAACGCCTCGCACCTGAGGACATTTCCTGGCTCTGGTGGTGTGCATACGGGAACGAGTTCATTGAACGGTATTGGAGGGCTTTGGGGTGTAGGTCATGGCGAAAACACGGGTTCTTCTCCATTCAATGGTGCTGGTAACGTCGAGTTTGGAAACGGAGGAAGCGTTGTAGGTTATGGTAGAAGCATTAGAAGCAATGTTTCTTCAGCTTCTTTGTACTCTGCACCAAATATTTATGATGAAGTTCATGGGAATAATGAAGAAGGAAACTCATTTTATGGGCATTCAAGTTGGCAGTCATTGCCCACAGAGCTTGAGGATTCTTCCTCAATTGGGTTTGGGCTTGGCAATGCAGCTTCAGATGAATTGCTGCTTAGGAAGAAGAAGATAGAAGCAACAGAAATCAAGAGTTTTATAATAGTAGGTGATGATGTTTTTGGTAATTGTGATACACTCCTCCTCCTCCGCCCCTTCCTCCTCCGCCTCCTCCGCCCCCTCCTCCGCCTCCTCCTCCCATATGACGATATGATACTGTGA

Protein sequence

SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASDELLLRKKKIEATEIKSFIIVGDDVFGNCDTLLLLRPFLLRLLRPLLRLLLPYDDMIL
Homology
[Close]
BLAST of Carg25613 vs. NCBI nr
Match: KAG7012649.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 989.6 bits (2557), Expect = 1.0e-284
Identity = 504/504 (100.00%), Postives = 504/504 (100.00%), Query Frame = 0 

Query: 1   SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVV 60
           SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVV
Sbjct: 1   SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVV 60

Query: 61  AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE 120
           AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE
Sbjct: 61  AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE 120

Query: 121 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 180
           SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK
Sbjct: 121 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 180

Query: 181 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGR 240
           RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGR
Sbjct: 181 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGR 240

Query: 241 GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG 300
           GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG
Sbjct: 241 GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG 300

Query: 301 GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG 360
           GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG
Sbjct: 301 GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG 360

Query: 361 ENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG 420
           ENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG
Sbjct: 361 ENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG 420

Query: 421 HSSWQSLPTELEDSSSIGFGLGNAASDELLLRKKKIEATEIKSFIIVGDDVFGNCDTLLL 480
           HSSWQSLPTELEDSSSIGFGLGNAASDELLLRKKKIEATEIKSFIIVGDDVFGNCDTLLL
Sbjct: 421 HSSWQSLPTELEDSSSIGFGLGNAASDELLLRKKKIEATEIKSFIIVGDDVFGNCDTLLL 480

Query: 481 LRPFLLRLLRPLLRLLLPYDDMIL 505
           LRPFLLRLLRPLLRLLLPYDDMIL
Sbjct: 481 LRPFLLRLLRPLLRLLLPYDDMIL 504

[Close]
BLAST of Carg25613 vs. NCBI nr
Match: XP_022966755.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima])

HSP 1 Score: 879.4 bits (2271), Expect = 1.5e-251
Identity = 443/444 (99.77%), Postives = 444/444 (100.00%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRS+RSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSVRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASD 448
           WQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASD 444

[Close]
BLAST of Carg25613 vs. NCBI nr
Match: KAG6573534.1 (Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 879.0 bits (2270), Expect = 1.9e-251
Identity = 443/447 (99.11%), Postives = 446/447 (99.78%), Query Frame = 0 

Query: 1   SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVV 60
           SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFV+FSDPVV
Sbjct: 20  SGLMDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVLFSDPVV 79

Query: 61  AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE 120
           AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE
Sbjct: 80  AARVVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTE 139

Query: 121 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 180
           SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK
Sbjct: 140 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 199

Query: 181 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGR 240
           RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFS VTVGR
Sbjct: 200 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSRVTVGR 259

Query: 241 GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG 300
           GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG
Sbjct: 260 GGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYG 319

Query: 301 GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG 360
           GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG
Sbjct: 320 GGSGGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHG 379

Query: 361 ENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG 420
           ENTGSSPFNG+GNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG
Sbjct: 380 ENTGSSPFNGSGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYG 439

Query: 421 HSSWQSLPTELEDSSSIGFGLGNAASD 448
           HSSWQSLPTELEDSSS+GFGLGNAASD
Sbjct: 440 HSSWQSLPTELEDSSSVGFGLGNAASD 466

[Close]
BLAST of Carg25613 vs. NCBI nr
Match: XP_022925356.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata])

HSP 1 Score: 878.6 bits (2269), Expect = 2.5e-251
Identity = 443/444 (99.77%), Postives = 444/444 (100.00%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIG+NLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGVNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASD 448
           WQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASD 444

[Close]
BLAST of Carg25613 vs. NCBI nr
Match: XP_023542103.1 (heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 877.9 bits (2267), Expect = 4.3e-251
Identity = 443/444 (99.77%), Postives = 443/444 (99.77%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGEN 
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENA 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASD 448
           WQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASD 444

[Close]
BLAST of Carg25613 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.3e-61
Identity = 172/442 (38.91%), Postives = 235/442 (53.17%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLF+GGISW+TDED+L+++F  YGEV + ++MRD+ TGR RGFGFV+FSDP V  RV
Sbjct: 4   DQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLDRV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR----NNTGILGSPGPTRTKKIFVGGLASTVTE 124
           + EKH ID R V+ K+A+ R++Q +  R    N +   G     +TKKIFVGGL  T+T+
Sbjct: 64  LQEKHSIDTREVDVKRAMSREEQQVSGRTGNLNTSRSSGGDAYNKTKKIFVGGLPPTLTD 123

Query: 125 SDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVK 184
            +F++YF+ +G +TD  +MYD  T RPRGFGF++++SE++V+ VL+KTFH+L+GK VEVK
Sbjct: 124 EEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDAVDSVLHKTFHDLSGKQVEVK 183

Query: 185 RAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRF-SPVTVG 244
           RA+PK+ +P       G    S G  GS   GY QGY        G     RF    +VG
Sbjct: 184 RALPKDANP-------GGGGRSMGGGGS--GGY-QGYGGNESSYDGRMDSNRFLQHQSVG 243

Query: 245 RGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVY 304
            G  S  S GYG G          YG G NG+    YG      Y G+   YG+ +   Y
Sbjct: 244 NGLPSYGSSGYGAG----------YGNGSNGAGYGAYG-----GYTGSAGGYGAGATAGY 303

Query: 305 GGGS---GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG 364
           G  +    G GS    + +N W    +S   N  +     GSG  H+G          +G
Sbjct: 304 GATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGY-----GSGAAHSG----------YG 363

Query: 365 VGHGENTGSSPFNGAGNVEFGNG---GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 424
           V        SP +G  N  +G G   GS  GYG        + + Y          G+N 
Sbjct: 364 VPGAAPPTQSP-SGYSNQGYGYGGYSGSDSGYG--------NQAAYGVVGGRPSGGGSNN 396

Query: 425 EGN-----SFYGHSSWQSLPTE 431
            G+       YG  SW+S P++
Sbjct: 424 PGSGGYMGGGYGDGSWRSDPSQ 396

[Close]
BLAST of Carg25613 vs. ExPASy Swiss-Prot
Match: Q96DH6 (RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 3.9e-45
Identity = 123/323 (38.08%), Postives = 173/323 (53.56%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  D L+ YF  +GE+ E M+MRD  T R+RGFGFV F+DP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K+YF+QFG + DA++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKE-LSPVPNRNQLGAYPYS-------FGRVG--SYLSGYNQGYNTTSVGGYGLRSDGRF 244
           PKE + P   R +    PY+        G +G  ++++ Y +GY       YG +  G F
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-F 258

Query: 245 SPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGS 304
                G    + ++   G G N            P   ++L YG     S  GN     S
Sbjct: 259 PAAAYGPVAAAAVAAARGSGSNPARPGGFPGANSPGPVADL-YGPASQDSGVGNYISAAS 318

Query: 305 PSPMVYGGGSGGNGSILSSSVQN 317
           P P   G G G  G +++++  N
Sbjct: 319 PQP-GSGFGHGIAGPLIATAFTN 325

[Close]
BLAST of Carg25613 vs. ExPASy Swiss-Prot
Match: Q920Q6 (RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-44
Identity = 126/340 (37.06%), Postives = 176/340 (51.76%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  D L+ YF  +GE+ E M+MRD  T R+RGFGFV F+DP    +V
Sbjct: 19  DPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKV 78

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +D +T++ K A PR  Q  +             TRTKKIFVGGL++     D 
Sbjct: 79  LGQPHHELDSKTIDPKVAFPRRAQPKM------------VTRTKKIFVGGLSANTVVEDV 138

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K+YF+QFG + DA++M+D  T R RGFGF+T+E+E+ VEKV    FHE+N KMVE K+A 
Sbjct: 139 KQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKE-LSPVPNRNQLGAYPYS-------FGRVG--SYLSGYNQGYNTTSVGGYGLRSDGRF 244
           PKE + P   R +    PY+        G +G  ++++ Y +GY       YG +  G F
Sbjct: 199 PKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATYGRGY-PGFAPSYGYQFPG-F 258

Query: 245 SPVTVGRGGLSPISPGYGIGLN-LDAGLNLNYGTGPNGSSNL----------------IY 304
                G    + ++   G  LN   A  N      P GS+                  +Y
Sbjct: 259 PAAAYGPVAAAAVAAARGSVLNSYSAQPNFGAPASPAGSNPARPGGFPGANSPGPVADLY 318

Query: 305 GRVMSSSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQN 317
           G     S  GN     SP P   G G G  G +++++  N
Sbjct: 319 GPASQDSGVGNYISAASPQP-GSGFGHGIAGPLIATAFTN 343

[Close]
BLAST of Carg25613 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-44
Identity = 92/184 (50.00%), Postives = 124/184 (67.39%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           DPGK+FIGG+SW T  + L+ YF  YG++ E M+M+D  T R+RGFGFV FSDP    +V
Sbjct: 27  DPGKMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKV 86

Query: 65  VLE-KHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 124
           + +  H +DG+ V+ K A PR       R +  ++     TRTKKIFVGGL++  T  D 
Sbjct: 87  LTQGTHELDGKKVDPKVAFPR-------RAHPKMV-----TRTKKIFVGGLSAPTTLEDV 146

Query: 125 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 184
           K YF+QFG I DA++M+D  T R RGFGF+T++SE+ V+KV    FHE+N KMVE K+A 
Sbjct: 147 KSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDKVCEIHFHEINNKMVECKKAQ 198

Query: 185 PKEL 188
           PKE+
Sbjct: 207 PKEV 198

[Close]
BLAST of Carg25613 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.3e-44
Identity = 102/228 (44.74%), Postives = 143/228 (62.72%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D  KLF+GGI+ +T E+ LKQYF  YG V+E ++ +++ TG+ RGFGFV F++     + 
Sbjct: 4   DRYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKA 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDD-----------QNILSRNNTGI--LGSPGPT-RTKKIF 124
           + + H I G+ V+ +KA+ + +           +  + + N G+  + S G T RTKKIF
Sbjct: 64  LRDTHFILGKPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIF 123

Query: 125 VGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFH 184
           VGGL+S  TE +FK YF++FG  TD VVM+D  T RPRGFGF+TY+SE+SVE V+   FH
Sbjct: 124 VGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDSVEVVMQSNFH 183

Query: 185 ELNGKMVEVKRAVPKELSPVPNRNQLGAYP-YSFGRVGSYLSGYNQGY 218
           EL+ K VEVKRA+PKE     N N +   P YS  +   Y+   N GY
Sbjct: 184 ELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATPYVPEQN-GY 230

[Close]
BLAST of Carg25613 vs. ExPASy TrEMBL
Match: A0A6J1HSH2 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111466370 PE=4 SV=1)

HSP 1 Score: 879.4 bits (2271), Expect = 7.2e-252
Identity = 443/444 (99.77%), Postives = 444/444 (100.00%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRS+RSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSVRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASD 448
           WQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASD 444

[Close]
BLAST of Carg25613 vs. ExPASy TrEMBL
Match: A0A6J1EBZ7 (heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111432644 PE=4 SV=1)

HSP 1 Score: 878.6 bits (2269), Expect = 1.2e-251
Identity = 443/444 (99.77%), Postives = 444/444 (100.00%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIG+NLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS
Sbjct: 241 SPISPGYGIGVNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 363
           GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGVGHGENT 360

Query: 364 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 423
           GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS
Sbjct: 361 GSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGHSS 420

Query: 424 WQSLPTELEDSSSIGFGLGNAASD 448
           WQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 WQSLPTELEDSSSIGFGLGNAASD 444

[Close]
BLAST of Carg25613 vs. ExPASy TrEMBL
Match: A0A6J1CL94 (heterogeneous nuclear ribonucleoprotein 1 OS=Momordica charantia OX=3673 GN=LOC111012638 PE=4 SV=1)

HSP 1 Score: 787.7 bits (2033), Expect = 2.8e-224
Identity = 401/454 (88.33%), Postives = 422/454 (92.95%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YFQ++GEVVEVMIMRDR TGRARGFGFVVF+DPV+AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFQSFGEVVEVMIMRDRTTGRARGFGFVVFADPVIAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTITD VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTITDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQLG YPY FGRVGSYL+GYNQGYN  SVGGYGLRSDGRFSP++VGRGGL
Sbjct: 181 PKESSPVPNRNQLGGYPYGFGRVGSYLNGYNQGYNPASVGGYGLRSDGRFSPISVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYGIGLNLD GL+ NYG GPNG+SNL YGRVMS SYG NLNRYGSP+PM+YGGGS
Sbjct: 241 SPISPGYGIGLNLDTGLSPNYGAGPNGNSNLSYGRVMSPSYGVNLNRYGSPNPMLYGGGS 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNVGNSAG N+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVGNSAGANSSHLRTFPGSGGVHTGTNSLNSIGGLWGASASLGH 360

Query: 364 GENTGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN G SPFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GENAG-SPFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
           EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 452

[Close]
BLAST of Carg25613 vs. ExPASy TrEMBL
Match: A0A5D3E516 (Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00810 PE=4 SV=1)

HSP 1 Score: 780.0 bits (2013), Expect = 5.9e-222
Identity = 400/454 (88.11%), Postives = 419/454 (92.29%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 38  MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 97

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 98  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 157

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 158 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 217

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YPY+FGRVGSYL+GYNQGYN TSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 218 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 277

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+G+NLD GLN NYGTGP  SSNL YGRVMS SYGGNLNRYGSP+PMVYGGG 
Sbjct: 278 SPISPGYGMGINLDTGLNPNYGTGP--SSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 337

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNV NSAGTN+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 338 GGNGSILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 397

Query: 364 GENTGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN G SPFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 398 GEN-GGSPFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 457

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASD
Sbjct: 458 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASD 487

[Close]
BLAST of Carg25613 vs. ExPASy TrEMBL
Match: A0A1S3CK54 (heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC103501720 PE=4 SV=1)

HSP 1 Score: 780.0 bits (2013), Expect = 5.9e-222
Identity = 400/454 (88.11%), Postives = 419/454 (92.29%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           MDPGKLFIGGISWDTDEDRL++YF+ +GEVVEVMIMRDR TGRARGFGFVVF+DPV AAR
Sbjct: 1   MDPGKLFIGGISWDTDEDRLREYFRNFGEVVEVMIMRDRTTGRARGFGFVVFADPVAAAR 60

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF
Sbjct: 61  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 120

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYFDQFGTI D VVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV
Sbjct: 121 KKYFDQFGTIVDVVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 180

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PKE SPVPNRNQL  YPY+FGRVGSYL+GYNQGYN TSVGGYGLRSDGRFSPVTVGRGGL
Sbjct: 181 PKESSPVPNRNQLAGYPYNFGRVGSYLNGYNQGYNPTSVGGYGLRSDGRFSPVTVGRGGL 240

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SPISPGYG+G+NLD GLN NYGTGP  SSNL YGRVMS SYGGNLNRYGSP+PMVYGGG 
Sbjct: 241 SPISPGYGMGINLDTGLNPNYGTGP--SSNLSYGRVMSPSYGGNLNRYGSPNPMVYGGGG 300

Query: 304 GGNGSILSSSVQNLWGNVGNSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWG----VGH 363
           GGNGSILSSSVQNLWGNV NSAGTN+SHLRTFPGSGGVHTGT+SLN IGGLWG    +GH
Sbjct: 301 GGNGSILSSSVQNLWGNVSNSAGTNSSHLRTFPGSGGVHTGTNSLNNIGGLWGTSASLGH 360

Query: 364 GENTGSSPFNGAGNVEFGNG------GSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNE 423
           GEN G SPFN A N++FGNG      G+ VGY RSI +NVSSASLYSAPNIYDEVHGNN+
Sbjct: 361 GEN-GGSPFNTA-NLDFGNGDASFTSGTTVGYARSIGTNVSSASLYSAPNIYDEVHGNND 420

Query: 424 EGNSFYGHSSWQSLPTELEDSSSIGFGLGNAASD 448
           EGN+FYGHSSWQSLPTELEDSSSIGFGLGNAASD
Sbjct: 421 EGNTFYGHSSWQSLPTELEDSSSIGFGLGNAASD 450

[Close]
BLAST of Carg25613 vs. TAIR 10
Match: AT3G07810.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 423.3 bits (1087), Expect = 2.7e-118
Identity = 257/465 (55.27%), Postives = 312/465 (67.10%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDT+E+RLK+YF ++GEV+E +I++DR TGRARGFGFVVF+DP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 124
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 125 FKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 184
           FK YF+QFGT TD VVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 185 VPKELSPVPNRNQLGA-YPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRG 244
           VPKELSP P+R+ LGA Y Y   RV + L+GY QG+N  +VGGYGLR DGRFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 245 GLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGG 304
           G +  S GYG+ +N D GL   +  G N + N+ YGR MS  Y GN NR+G P+    GG
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGG 303

Query: 305 GSGGNGSILSSSVQNLWGNVG----NSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGV 364
             GGN S  SS  +NLWGN G    N+  TN S+  T+   GG  +G ++L+G  G  GV
Sbjct: 304 NGGGNSSFFSSVTRNLWGNNGGLNYNNNNTN-SNSNTY--MGGSSSGNNTLSGPFGNSGV 363

Query: 365 GHGENTGSSPFNGAGNVEFGNGGS--------VVGY-----GRSIRSNVSSASLYSAPNI 424
             G   G +      NV+FG GG+          GY     G +  +  SS S  SA N 
Sbjct: 364 NWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNN 423

Query: 425 --YD-----EVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLG 443
             YD     E +GN     + Y   +W+S   E E  +   +G+G
Sbjct: 424 TGYDTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIG 460

[Close]
BLAST of Carg25613 vs. TAIR 10
Match: AT3G07810.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 423.3 bits (1087), Expect = 2.7e-118
Identity = 257/465 (55.27%), Postives = 312/465 (67.10%), Query Frame = 0 

Query: 5   DPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAARV 64
           D GKLFIGGISWDT+E+RLK+YF ++GEV+E +I++DR TGRARGFGFVVF+DP VA  V
Sbjct: 4   DNGKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIV 63

Query: 65  VLEKHVIDGRTVEAKKAVPRDDQNILSR-NNTGILGSP-GPTRTKKIFVGGLASTVTESD 124
           + EKH IDGR VEAKKAVPRDDQN+++R N++ I GSP GP RT+KIFVGGL S+VTESD
Sbjct: 64  ITEKHNIDGRLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESD 123

Query: 125 FKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRA 184
           FK YF+QFGT TD VVMYDHNTQRPRGFGFITY+SEE+VEKVL KTFHELNGKMVEVKRA
Sbjct: 124 FKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRA 183

Query: 185 VPKELSPVPNRNQLGA-YPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRG 244
           VPKELSP P+R+ LGA Y Y   RV + L+GY QG+N  +VGGYGLR DGRFSPV  GR 
Sbjct: 184 VPKELSPGPSRSPLGAGYSYGVNRVNNLLNGYAQGFNPAAVGGYGLRMDGRFSPVGAGRS 243

Query: 245 GLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGG 304
           G +  S GYG+ +N D GL   +  G N + N+ YGR MS  Y GN NR+G P+    GG
Sbjct: 244 GFANYSSGYGMNVNFDQGLPTGFTGGTNYNGNVDYGRGMSPYYIGNTNRFG-PAVGYEGG 303

Query: 305 GSGGNGSILSSSVQNLWGNVG----NSAGTNASHLRTFPGSGGVHTGTSSLNGIGGLWGV 364
             GGN S  SS  +NLWGN G    N+  TN S+  T+   GG  +G ++L+G  G  GV
Sbjct: 304 NGGGNSSFFSSVTRNLWGNNGGLNYNNNNTN-SNSNTY--MGGSSSGNNTLSGPFGNSGV 363

Query: 365 GHGENTGSSPFNGAGNVEFGNGGS--------VVGY-----GRSIRSNVSSASLYSAPNI 424
             G   G +      NV+FG GG+          GY     G +  +  SS S  SA N 
Sbjct: 364 NWGAPGGGNNAVSNENVKFGYGGNGESGFGLGTGGYAARNPGANKAAPSSSFSSASATNN 423

Query: 425 --YD-----EVHGNNEEGNSFYGHSSWQSLPTELEDSSSIGFGLG 443
             YD     E +GN     + Y   +W+S   E E  +   +G+G
Sbjct: 424 TGYDTAGLAEFYGN----GAVYSDPTWRSPTPETEGPAPFSYGIG 460

[Close]
BLAST of Carg25613 vs. TAIR 10
Match: AT5G47620.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 373.2 bits (957), Expect = 3.2e-103
Identity = 217/437 (49.66%), Postives = 282/437 (64.53%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+  KLFIGGISW+T EDRL+ YF ++GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVL KH+IDG+ VEAKKAVPRDD  + +++N+ + GSPGP+ +KKIFVGGLAS+VTE++F
Sbjct: 63  VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYF QFG ITD VVMYDH TQRPRGFGFI+Y+SEE+V+KVL KTFHELNGKMVEVK AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PK+++    RNQ+    +   R+ S L+ Y QG++ + + GYG++ + R+SP    RGG 
Sbjct: 183 PKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SP   GYGI LN +     NYG+G +G     +GR  S  Y  +L R+G  S M  GG S
Sbjct: 243 SPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFSPGYAASLGRFG--SQMESGGAS 302

Query: 304 GGNGSILSSSVQN-LWGNVGNSAGTNASHLR-TFPGSGGVHTGTSSLNGIGGLWGVGHGE 363
            GNGS+L+++ +N LWGN G    +N+   R +F G+ G+    SSL  IG  WG     
Sbjct: 303 VGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNSGM----SSLGSIGDNWGTVARA 362

Query: 364 NTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGH 423
            +      G   +E   G  V GY        S +S+               E +S Y  
Sbjct: 363 RSSYHGERGGVGLEAMRGVHVGGYS-------SGSSIL--------------EADSLYSD 408

Query: 424 SSWQSLPTELEDSSSIG 439
           S W SLP + E+   +G
Sbjct: 423 SMWLSLPAKAEEGLGMG 408

[Close]
BLAST of Carg25613 vs. TAIR 10
Match: AT5G47620.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 373.2 bits (957), Expect = 3.2e-103
Identity = 217/437 (49.66%), Postives = 282/437 (64.53%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+  KLFIGGISW+T EDRL+ YF ++GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 64  VVLEKHVIDGRTVEAKKAVPRDDQNILSRNNTGILGSPGPTRTKKIFVGGLASTVTESDF 123
           VVL KH+IDG+ VEAKKAVPRDD  + +++N+ + GSPGP+ +KKIFVGGLAS+VTE++F
Sbjct: 63  VVLLKHIIDGKIVEAKKAVPRDDHVVFNKSNSSLQGSPGPSNSKKIFVGGLASSVTEAEF 122

Query: 124 KKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESVEKVLYKTFHELNGKMVEVKRAV 183
           KKYF QFG ITD VVMYDH TQRPRGFGFI+Y+SEE+V+KVL KTFHELNGKMVEVK AV
Sbjct: 123 KKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAVDKVLQKTFHELNGKMVEVKLAV 182

Query: 184 PKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTSVGGYGLRSDGRFSPVTVGRGGL 243
           PK+++    RNQ+    +   R+ S L+ Y QG++ + + GYG++ + R+SP    RGG 
Sbjct: 183 PKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSPISGYGVKPEVRYSPAVGNRGGF 242

Query: 244 SPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMSSSYGGNLNRYGSPSPMVYGGGS 303
           SP   GYGI LN +     NYG+G +G     +GR  S  Y  +L R+G  S M  GG S
Sbjct: 243 SPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFSPGYAASLGRFG--SQMESGGAS 302

Query: 304 GGNGSILSSSVQN-LWGNVGNSAGTNASHLR-TFPGSGGVHTGTSSLNGIGGLWGVGHGE 363
            GNGS+L+++ +N LWGN G    +N+   R +F G+ G+    SSL  IG  WG     
Sbjct: 303 VGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNSGM----SSLGSIGDNWGTVARA 362

Query: 364 NTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLYSAPNIYDEVHGNNEEGNSFYGH 423
            +      G   +E   G  V GY        S +S+               E +S Y  
Sbjct: 363 RSSYHGERGGVGLEAMRGVHVGGYS-------SGSSIL--------------EADSLYSD 408

Query: 424 SSWQSLPTELEDSSSIG 439
           S W SLP + E+   +G
Sbjct: 423 SMWLSLPAKAEEGLGMG 408

[Close]
BLAST of Carg25613 vs. TAIR 10
Match: AT5G47620.4 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 360.9 bits (925), Expect = 1.6e-99
Identity = 217/459 (47.28%), Postives = 282/459 (61.44%), Query Frame = 0 

Query: 4   MDPGKLFIGGISWDTDEDRLKQYFQTYGEVVEVMIMRDRNTGRARGFGFVVFSDPVVAAR 63
           M+  KLFIGGISW+T EDRL+ YF ++GEV+E +IM+DR TGRARGFGFVVF+DP VA R
Sbjct: 3   MESCKLFIGGISWETSEDRLRDYFHSFGEVLEAVIMKDRATGRARGFGFVVFADPNVAER 62

Query: 64  VVLEKHVIDGR----------------------TVEAKKAVPRDDQNILSRNNTGILGSP 123
           VVL KH+IDG+                       VEAKKAVPRDD  + +++N+ + GSP
Sbjct: 63  VVLLKHIIDGKILVDSIVYNQLCRSDKCISLSEVVEAKKAVPRDDHVVFNKSNSSLQGSP 122

Query: 124 GPTRTKKIFVGGLASTVTESDFKKYFDQFGTITDAVVMYDHNTQRPRGFGFITYESEESV 183
           GP+ +KKIFVGGLAS+VTE++FKKYF QFG ITD VVMYDH TQRPRGFGFI+Y+SEE+V
Sbjct: 123 GPSNSKKIFVGGLASSVTEAEFKKYFAQFGMITDVVVMYDHRTQRPRGFGFISYDSEEAV 182

Query: 184 EKVLYKTFHELNGKMVEVKRAVPKELSPVPNRNQLGAYPYSFGRVGSYLSGYNQGYNTTS 243
           +KVL KTFHELNGKMVEVK AVPK+++    RNQ+    +   R+ S L+ Y QG++ + 
Sbjct: 183 DKVLQKTFHELNGKMVEVKLAVPKDMALNTMRNQMNVNSFGTSRISSLLNEYTQGFSPSP 242

Query: 244 VGGYGLRSDGRFSPVTVGRGGLSPISPGYGIGLNLDAGLNLNYGTGPNGSSNLIYGRVMS 303
           + GYG++ + R+SP    RGG SP   GYGI LN +     NYG+G +G     +GR  S
Sbjct: 243 ISGYGVKPEVRYSPAVGNRGGFSPFGHGYGIELNFEPNQTQNYGSGSSGG----FGRPFS 302

Query: 304 SSYGGNLNRYGSPSPMVYGGGSGGNGSILSSSVQN-LWGNVGNSAGTNASHLR-TFPGSG 363
             Y  +L R+G  S M  GG S GNGS+L+++ +N LWGN G    +N+   R +F G+ 
Sbjct: 303 PGYAASLGRFG--SQMESGGASVGNGSVLNAAPKNHLWGNGGLGYMSNSPISRSSFSGNS 362

Query: 364 GVHTGTSSLNGIGGLWGVGHGENTGSSPFNGAGNVEFGNGGSVVGYGRSIRSNVSSASLY 423
           G+    SSL  IG  WG      +      G   +E   G  V GY        S +S+ 
Sbjct: 363 GM----SSLGSIGDNWGTVARARSSYHGERGGVGLEAMRGVHVGGYS-------SGSSIL 422

Query: 424 SAPNIYDEVHGNNEEGNSFYGHSSWQSLPTELEDSSSIG 439
                         E +S Y  S W SLP + E+   +G
Sbjct: 423 --------------EADSLYSDSMWLSLPAKAEEGLGMG 430

The following BLAST results are available for this feature:
BLAST of Carg25613 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012649.11.0e-284100.00Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp... [more]
XP_022966755.11.5e-25199.77heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita maxima][more]
KAG6573534.11.9e-25199.11Heterogeneous nuclear ribonucleoprotein 1, partial [Cucurbita argyrosperma subsp... [more]
XP_022925356.12.5e-25199.77heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita moschata][more]
XP_023542103.14.3e-25199.77heterogeneous nuclear ribonucleoprotein 1-like [Cucurbita pepo subsp. pepo][more]
BLAST of Carg25613 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8W0342.3e-6138.91Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP... [more]
Q96DH63.9e-4538.08RNA-binding protein Musashi homolog 2 OS=Homo sapiens OX=9606 GN=MSI2 PE=1 SV=1[more]
Q920Q61.9e-4437.06RNA-binding protein Musashi homolog 2 OS=Mus musculus OX=10090 GN=Msi2 PE=1 SV=1[more]
Q9VVE51.9e-4450.00RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R... [more]
Q9C6523.3e-4444.74RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1[more]
BLAST of Carg25613 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1HSH27.2e-25299.77heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita maxima OX=3661 GN=LO... [more]
A0A6J1EBZ71.2e-25199.77heterogeneous nuclear ribonucleoprotein 1-like OS=Cucurbita moschata OX=3662 GN=... [more]
A0A6J1CL942.8e-22488.33heterogeneous nuclear ribonucleoprotein 1 OS=Momordica charantia OX=3673 GN=LOC1... [more]
A0A5D3E5165.9e-22288.11Heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A1S3CK545.9e-22288.11heterogeneous nuclear ribonucleoprotein 1 OS=Cucumis melo OX=3656 GN=LOC10350172... [more]
BLAST of Carg25613 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G07810.12.7e-11855.27RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G07810.22.7e-11855.27RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G47620.13.2e-10349.66RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G47620.23.2e-10349.66RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT5G47620.41.6e-9947.28RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 8..79
e-value: 2.8E-22
score: 90.0
coord: 108..180
e-value: 4.1E-24
score: 96.1
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 9..74
e-value: 1.6E-15
score: 56.7
coord: 109..167
e-value: 2.7E-16
score: 59.2
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 107..184
score: 17.676954
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 7..83
score: 17.728121
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 104..190
e-value: 2.4E-26
score: 93.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 6..89
e-value: 2.0E-26
score: 94.0
NoneNo IPR availablePANTHERPTHR48032:SF1HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKEcoord: 4..448
NoneNo IPR availablePANTHERPTHR48032RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6coord: 4..448
IPR034131DAZ-associated protein 1, RNA recognition motif 2CDDcd12327RRM2_DAZAP1coord: 105..184
e-value: 1.11215E-47
score: 157.913
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 103..205
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 5..101

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25613-RACarg25613-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding