Carg25596 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25596
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor MYB36-like
Location	Carg_Chr12: 9723505 .. 9724979 (+)
RNA-Seq Expression	Carg25596
Synteny	Carg25596

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGCGAGCACCATGCTGTGACAAAGACAACGTAAAGAAAGGGCCATGGTCGCCTGAAGAAGATGAGAAGCTCAAGGCTTATATCCAACTCCATGGGACTGGTGGCAATTGGATTGCTCTTCCCAACAAAATAGGTACCTTACAAACCAAAATAAAAGTCCCAACTTTCTCCTTTGGAAGGTTTTTGATTCCGAAAATGGTTGAATATTTGCAGGGTTGAAGAGGTGCGGGAAGAGTTGCAGGCTTCGATGGCTCAATTACTTGAGGCCGAATATCAAACATGGTGGATTCTCTGAAGAAGAAGACGATATTATTTGTAAACTCTTCGTAAGCATTGGTAGCAGGTAAACGAATTTCCACGATGATATGATTTTGTCCACTTTGAGCATAAACTCTCGTGGTTTTGTTTTTTTGGCTTTCCCATAAGGTTTCATTCAGATGGAGATGTATTCCTTACTTGTAAACGAACAGTCTCTCCTTAATCGAGACTCGGCTTCTTCTTTGGAGTCTTCGAACAGAATACACCCTTTAGAACCTCCCCTGAGACCTATGCCCTCGAACAACCTCCCTTTAATCGAGGCTCGACTCTTTCTTTGGAGTCGTCGAACAAAATACACCCTTTATTCGACACTTGAGTAACTTTTTACTACATTTCCGAGGCTCACAACTTCTTTCTTCAACATTTGAGGAATTTATTGACATGGCAAAGTTAAAAGCATGACTCTGATACCAAATCACGAACCTCCATAATGATACGTTATTGTCCACTTTGAGCATAAGCTTTCATATGTGTGTTCTTGGCTTCTCTGAAAGGCCTCATCCCAATAGAGATGTATTTGTTACTTATAAATCCATGATCATTGACTCCCTCCCATCCATTCTCAACAGATTTGAATATAAAAATGCATTCTTTGACGAACCCATGTGAAATAATTAATAAACAATTGTTGAATCTAAGAGGCTGCTAAGATAATGCTAAAATATCTCCATTTATTTGCTTTTAGGTGGTCAATAATTGCAGCTCAGTTACCTGGAAGAACAGACAACGACATAAAGAACTATTGGAACACGAGGTTGAAGAAGAAACTGCTCGGAACTCCCAAACATGTCAGCTCAAGAAAGACTGCACAGACAGTGACAAGCTCCGCCATGGAAAGGCTCCAGCTTCAAAAGCAGCTTCAAGGCTTTCAAACCGCCTTCTCTTTCGACAGCACCTCCATGCTCTGGCCTCCGGTGTCGGCCAGTGGGAGCCTTGTCAATGGTGAGTGCAGTCTGGAAGGGTGCACGGGGAAGAGTCCGGTCGGTTCGAGCTCGGCGGCGAAGGAAATGAATGATTGTCAAGAGAGTTTGTTTTGGTGGTGTAATGATTTTGATGCAAATTCTGCAGCTGCTTCGAACCTTTGGGAGACTACTTCAGCTCTTCAATCCGATGGGATTCTTCAAGATTTTGAACTTCTTGGTTACACTCTTTAG

mRNA sequence

ATGGGGCGAGCACCATGCTGTGACAAAGACAACGTAAAGAAAGGGCCATGGTCGCCTGAAGAAGATGAGAAGCTCAAGGCTTATATCCAACTCCATGGGACTGGTGGCAATTGGATTGCTCTTCCCAACAAAATAGGCTTTCAAACCGCCTTCTCTTTCGACAGCACCTCCATGCTCTGGCCTCCGGTGTCGGCCAGTGGGAGCCTTGTCAATGGTGAGTGCAGTCTGGAAGGGTGCACGGGGAAGAGTCCGGTCGGTTCGAGCTCGGCGGCGAAGGAAATGAATGATTGTCAAGAGAGTTTGTTTTGGTGGTGTAATGATTTTGATGCAAATTCTGCAGCTGCTTCGAACCTTTGGGAGACTACTTCAGCTCTTCAATCCGATGGGATTCTTCAAGATTTTGAACTTCTTGGTTACACTCTTTAG

Coding sequence (CDS)

ATGGGGCGAGCACCATGCTGTGACAAAGACAACGTAAAGAAAGGGCCATGGTCGCCTGAAGAAGATGAGAAGCTCAAGGCTTATATCCAACTCCATGGGACTGGTGGCAATTGGATTGCTCTTCCCAACAAAATAGGCTTTCAAACCGCCTTCTCTTTCGACAGCACCTCCATGCTCTGGCCTCCGGTGTCGGCCAGTGGGAGCCTTGTCAATGGTGAGTGCAGTCTGGAAGGGTGCACGGGGAAGAGTCCGGTCGGTTCGAGCTCGGCGGCGAAGGAAATGAATGATTGTCAAGAGAGTTTGTTTTGGTGGTGTAATGATTTTGATGCAAATTCTGCAGCTGCTTCGAACCTTTGGGAGACTACTTCAGCTCTTCAATCCGATGGGATTCTTCAAGATTTTGAACTTCTTGGTTACACTCTTTAG

Protein sequence

MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQTAFSFDSTSMLWPPVSASGSLVNGECSLEGCTGKSPVGSSSAAKEMNDCQESLFWWCNDFDANSAAASNLWETTSALQSDGILQDFELLGYTL

Homology

[Close]

BLAST of Carg25596 vs. NCBI nr
Match: KAG7021026.1 (Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 302.0 bits (772), Expect = 2.7e-78
Identity = 141/141 (100.00%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQTAFSFDSTSMLW 60
           MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQTAFSFDSTSMLW
Sbjct: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQTAFSFDSTSMLW 60

Query: 61  PPVSASGSLVNGECSLEGCTGKSPVGSSSAAKEMNDCQESLFWWCNDFDANSAAASNLWE 120
           PPVSASGSLVNGECSLEGCTGKSPVGSSSAAKEMNDCQESLFWWCNDFDANSAAASNLWE
Sbjct: 61  PPVSASGSLVNGECSLEGCTGKSPVGSSSAAKEMNDCQESLFWWCNDFDANSAAASNLWE 120

Query: 121 TTSALQSDGILQDFELLGYTL 142
           TTSALQSDGILQDFELLGYTL
Sbjct: 121 TTSALQSDGILQDFELLGYTL 141

[Close]

BLAST of Carg25596 vs. NCBI nr
Match: XP_022938000.1 (transcription factor MYB36-like [Cucurbita moschata])

HSP 1 Score: 258.1 bits (658), Expect = 4.5e-65
Identity = 141/244 (57.79%), Postives = 141/244 (57.79%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI--------------- 60
           MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI               
Sbjct: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPNIKHGGFSEEEDDIICKLFVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGT 120

Query: 121 ----------------------------GFQTAFSFDSTSMLWPPVSASGSLVNGECSLE 142
                                       GFQTAFSFDSTSMLWPPVSASGSLVNGECSLE
Sbjct: 121 PKHVSSRKTAQTVTSSAMERLQLQKQLQGFQTAFSFDSTSMLWPPVSASGSLVNGECSLE 180

[Close]

BLAST of Carg25596 vs. NCBI nr
Match: KAG6586199.1 (Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 253.1 bits (645), Expect = 1.5e-63
Identity = 137/236 (58.05%), Postives = 138/236 (58.47%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI--------------- 60
           MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI               
Sbjct: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPNIKHGGFSEEEDDIICKLFVSIAQLPGRTDNDIKNYWNTRLKKKLLGTPKHVSSRK 120

Query: 121 --------------------GFQTAFSFDSTSMLWPPVSASGSLVNGECSLEGCTGKSPV 142
                               GFQTAFSFDSTS LWP VSA GSLVNGECSLEGCTGKSPV
Sbjct: 121 TAQTVTSSTMERLQLQKQLQGFQTAFSFDSTSTLWPSVSAGGSLVNGECSLEGCTGKSPV 180

[Close]

BLAST of Carg25596 vs. NCBI nr
Match: XP_023537976.1 (transcription factor MYB36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 251.9 bits (642), Expect = 3.2e-63
Identity = 137/244 (56.15%), Postives = 139/244 (56.97%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI--------------- 60
           MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI               
Sbjct: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPNIKHGGFSEEEDDIICKLFVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGT 120

Query: 121 ----------------------------GFQTAFSFDSTSMLWPPVSASGSLVNGECSLE 142
                                       GFQTAFSFDSTS LWPPVSA GSLVNGEC+LE
Sbjct: 121 PKRVSSRKTAQTVTSSVMERLQLQKQLQGFQTAFSFDSTSTLWPPVSADGSLVNGECNLE 180

[Close]

BLAST of Carg25596 vs. NCBI nr
Match: XP_022965905.1 (transcription factor MYB36-like [Cucurbita maxima])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 135/244 (55.33%), Postives = 137/244 (56.15%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI--------------- 60
           MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI               
Sbjct: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPNIKHGGFSEEEDDIICKLFISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGT 120

Query: 121 ----------------------------GFQTAFSFDSTSMLWPPVSASGSLVNGECSLE 142
                                       GFQTAFSFDSTS LWPPVSA GSLVNGECSLE
Sbjct: 121 PKHVSSRKTAQTVTSSAMERLQLQKQLQGFQTAFSFDSTSTLWPPVSADGSLVNGECSLE 180

[Close]

BLAST of Carg25596 vs. ExPASy Swiss-Prot
Match: Q9M2Y9 (Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 4.3e-18
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK NVKKGPWSPEED KLK+YI+  GTGGNWIALP KIG +
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLK 48

[Close]

BLAST of Carg25596 vs. ExPASy Swiss-Prot
Match: Q9FKL2 (Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 7.3e-18
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK NVKKGPWSPEED KLK YI  +GTGGNWIALP KIG +
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLK 48

[Close]

BLAST of Carg25596 vs. ExPASy Swiss-Prot
Match: Q9SJL7 (Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.6e-17
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK NVK+GPWSPEED KLK YI+  GTGGNWIALP+K G +
Sbjct: 1  MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLR 48

[Close]

BLAST of Carg25596 vs. ExPASy Swiss-Prot
Match: F4JSU0 (Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 4.4e-15
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK  VKKGPWS EED  LK+YI+ HGTG NWI+LP +IG +
Sbjct: 1  MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIK 48

[Close]

BLAST of Carg25596 vs. ExPASy Swiss-Prot
Match: Q9FG68 (Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 9.9e-15
Identity = 32/48 (66.67%), Postives = 38/48 (79.17%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK  VK+GPWSPEED KL+ YI+ +G GGNWI+ P K G +
Sbjct: 1  MGRAPCCDKTKVKRGPWSPEEDSKLRDYIEKYGNGGNWISFPLKAGLR 48

[Close]

BLAST of Carg25596 vs. ExPASy TrEMBL
Match: A0A6J1FIE9 (transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111444224 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 141/244 (57.79%), Postives = 141/244 (57.79%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI--------------- 60
           MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI               
Sbjct: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPNIKHGGFSEEEDDIICKLFVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGT 120

Query: 121 ----------------------------GFQTAFSFDSTSMLWPPVSASGSLVNGECSLE 142
                                       GFQTAFSFDSTSMLWPPVSASGSLVNGECSLE
Sbjct: 121 PKHVSSRKTAQTVTSSAMERLQLQKQLQGFQTAFSFDSTSMLWPPVSASGSLVNGECSLE 180

[Close]

BLAST of Carg25596 vs. ExPASy TrEMBL
Match: A0A6J1HQ22 (transcription factor MYB36-like OS=Cucurbita maxima OX=3661 GN=LOC111465650 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 135/244 (55.33%), Postives = 137/244 (56.15%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI--------------- 60
           MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKI               
Sbjct: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPNIKHGGFSEEEDDIICKLFISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGT 120

Query: 121 ----------------------------GFQTAFSFDSTSMLWPPVSASGSLVNGECSLE 142
                                       GFQTAFSFDSTS LWPPVSA GSLVNGECSLE
Sbjct: 121 PKHVSSRKTAQTVTSSAMERLQLQKQLQGFQTAFSFDSTSTLWPPVSADGSLVNGECSLE 180

[Close]

BLAST of Carg25596 vs. ExPASy TrEMBL
Match: A0A6J1DIT5 (transcription factor MYB36-like OS=Momordica charantia OX=3673 GN=LOC111020865 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 87/257 (33.85%), Postives = 102/257 (39.69%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ------------ 60
           MGRA CCDKD VKKG WS EEDEKLKAYIQ +GTGGNWIALPNKIG +            
Sbjct: 1   MGRAACCDKDKVKKGAWSAEEDEKLKAYIQHYGTGGNWIALPNKIGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLKPNIKHGGFSQEEDNIICNLFISIGTRWSIIAAQLPGRTDNDVKNYWNTKLKKKLLGT 120

Query: 121 -------------------------------TAFSFDSTSMLWPPVSA--SGSLVNGECS 142
                                           ++S  + + LWP VS      +V G+  
Sbjct: 121 PKHSSNVNKLPSNSNSTMERLQLQMQLQGLHNSYSVYNAAALWPTVSTGEEAKVVTGQLP 180

[Close]

BLAST of Carg25596 vs. ExPASy TrEMBL
Match: A0A1S3BTZ9 (transcription factor MYB36 OS=Cucumis melo OX=3656 GN=LOC103493261 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-20
Identity = 89/295 (30.17%), Postives = 110/295 (37.29%), Query Frame = 0


Query: 1   MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGF------------- 60
           MGRAPCC+K+ VKKGPWSPEEDEKLK+YI LHGT  NWIALP+KIG              
Sbjct: 1   MGRAPCCEKEKVKKGPWSPEEDEKLKSYIHLHGTVSNWIALPHKIGLKRCGKSCRLRWLN 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  YLRPNIKHGGFSEEEDNIICSLFISIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLGT 120

Query: 121 ---------------------------------------QTAFSFDSTSMLWPPVSA--- 142
                                                  Q+ FSF++ S LWPP+S    
Sbjct: 121 PKQYFSNINKLSYHGDSRGTAQALTNSAIERLQLQMQLQQSTFSFNNASTLWPPMSVEEV 180

[Close]

BLAST of Carg25596 vs. ExPASy TrEMBL
Match: A0A6I9SPU4 (transcription factor RAX3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105061221 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.7e-17
Identity = 41/48 (85.42%), Postives = 43/48 (89.58%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDKDNVKKGPWSPEED KLKAYI+ HGTGGNWI LP KIG +
Sbjct: 1  MGRAPCCDKDNVKKGPWSPEEDAKLKAYIEQHGTGGNWITLPQKIGLK 48

[Close]

BLAST of Carg25596 vs. TAIR 10
Match: AT3G49690.1 (myb domain protein 84 )

HSP 1 Score: 92.4 bits (228), Expect = 3.1e-19
Identity = 39/48 (81.25%), Postives = 42/48 (87.50%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK NVKKGPWSPEED KLK+YI+  GTGGNWIALP KIG +
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLK 48

[Close]

BLAST of Carg25596 vs. TAIR 10
Match: AT5G57620.1 (myb domain protein 36 )

HSP 1 Score: 91.7 bits (226), Expect = 5.2e-19
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK NVKKGPWSPEED KLK YI  +GTGGNWIALP KIG +
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDVKLKDYIDKYGTGGNWIALPQKIGLK 48

[Close]

BLAST of Carg25596 vs. TAIR 10
Match: AT5G65790.1 (myb domain protein 68 )

HSP 1 Score: 91.3 bits (225), Expect = 6.8e-19
Identity = 39/48 (81.25%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK NVKKGPWSPEED KLK YI+  GTGGNWIALP KIG +
Sbjct: 1  MGRAPCCDKANVKKGPWSPEEDAKLKDYIENSGTGGNWIALPQKIGLR 48

[Close]

BLAST of Carg25596 vs. TAIR 10
Match: AT2G36890.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 89.4 bits (220), Expect = 2.6e-18
Identity = 37/48 (77.08%), Postives = 41/48 (85.42%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK NVK+GPWSPEED KLK YI+  GTGGNWIALP+K G +
Sbjct: 1  MGRAPCCDKANVKRGPWSPEEDAKLKDYIEKQGTGGNWIALPHKAGLR 48

[Close]

BLAST of Carg25596 vs. TAIR 10
Match: AT4G37780.1 (myb domain protein 87 )

HSP 1 Score: 82.4 bits (202), Expect = 3.2e-16
Identity = 34/48 (70.83%), Postives = 39/48 (81.25%), Query Frame = 0


Query: 1  MGRAPCCDKDNVKKGPWSPEEDEKLKAYIQLHGTGGNWIALPNKIGFQ 49
          MGRAPCCDK  VKKGPWS EED  LK+YI+ HGTG NWI+LP +IG +
Sbjct: 1  MGRAPCCDKMAVKKGPWSTEEDAVLKSYIEKHGTGNNWISLPQRIGIK 48

The following BLAST results are available for this feature:

BLAST of Carg25596 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7021026.1	2.7e-78	100.00	Transcription factor RAX3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022938000.1	4.5e-65	57.79	transcription factor MYB36-like [Cucurbita moschata]	[more]
KAG6586199.1	1.5e-63	58.05	Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023537976.1	3.2e-63	56.15	transcription factor MYB36-like [Cucurbita pepo subsp. pepo]	[more]
XP_022965905.1	6.1e-62	55.33	transcription factor MYB36-like [Cucurbita maxima]	[more]

BLAST of Carg25596 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2Y9	4.3e-18	81.25	Transcription factor RAX3 OS=Arabidopsis thaliana OX=3702 GN=RAX3 PE=2 SV=1	[more]
Q9FKL2	7.3e-18	81.25	Transcription factor MYB36 OS=Arabidopsis thaliana OX=3702 GN=MYB36 PE=1 SV=1	[more]
Q9SJL7	3.6e-17	77.08	Transcription factor RAX2 OS=Arabidopsis thaliana OX=3702 GN=RAX2 PE=1 SV=1	[more]
F4JSU0	4.4e-15	70.83	Transcription factor MYB87 OS=Arabidopsis thaliana OX=3702 GN=MYB87 PE=2 SV=1	[more]
Q9FG68	9.9e-15	66.67	Transcription factor RAX1 OS=Arabidopsis thaliana OX=3702 GN=RAX1 PE=1 SV=1	[more]

BLAST of Carg25596 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FIE9	2.2e-65	57.79	transcription factor MYB36-like OS=Cucurbita moschata OX=3662 GN=LOC111444224 PE...	[more]
A0A6J1HQ22	3.0e-62	55.33	transcription factor MYB36-like OS=Cucurbita maxima OX=3661 GN=LOC111465650 PE=4...	[more]
A0A6J1DIT5	2.7e-23	33.85	transcription factor MYB36-like OS=Momordica charantia OX=3673 GN=LOC111020865 P...	[more]
A0A1S3BTZ9	3.6e-20	30.17	transcription factor MYB36 OS=Cucumis melo OX=3656 GN=LOC103493261 PE=4 SV=1	[more]
A0A6I9SPU4	1.7e-17	85.42	transcription factor RAX3 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105061...	[more]

BLAST of Carg25596 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49690.1	3.1e-19	81.25	myb domain protein 84	[more]
AT5G57620.1	5.2e-19	81.25	myb domain protein 36	[more]
AT5G65790.1	6.8e-19	81.25	myb domain protein 68	[more]
AT2G36890.1	2.6e-18	77.08	Duplicated homeodomain-like superfamily protein	[more]
AT4G37780.1	3.2e-16	70.83	myb domain protein 87	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 6..84 e-value: 2.2E-8 score: 35.8
None	No IPR available	PANTHER	PTHR48000:SF26	MYB DNA-BINDING DOMAIN SUPERFAMILY PROTEIN-RELATED	coord: 1..47
None	No IPR available	PANTHER	PTHR48000	OS09G0431300 PROTEIN	coord: 1..47
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..46 e-value: 3.8E-6 score: 27.0
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 9..35 score: 10.977667
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 9..49 score: 6.957235
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..50 e-value: 4.4672E-5 score: 36.7846
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 9..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25596-RA	Carg25596-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding