Carg25589 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25589
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr12: 9778633 .. 9779979 (+)
RNA-Seq ExpressionCarg25589
SyntenyCarg25589
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAACACGAAGAACACGAAGAACAAGGCTAGCCGTTGCGAAGAACACGCCGAGAACGCCATGATTCCGTTGCTGCTATTGTTGGAAGCAAGGTAAGAGTTACTTCTTTTGGTTCATGATATCATTTTAAATAGCCCAAATTGAAGTATGATAAGAAGATATACATGAATGAATGAATTGGTTGTGTTTATTAGGTAGAATGGGTGAGGCAAATCTGATATGAATACCATAGAGGGGTATTTCAATTCCTTCCTTAAATGTTCTAATACCCTTTTCTAAACTTCCTTGATTGGCTTTTCATTTCCATATATTCCCAAATTTTTACAACTTTATCTCTTTTGCCCGATATGTATCCAACCACTAATCAATTGCATGTACCCGAAGGAGCAATTACAAGAAGTAAGATATCAAGTTAAACGAACACGACTCTCCACAATACTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCAAAAGGGCCTCGTACCAATGAAAGAGTATTCTTTGATTATAAACCTATGGTCATTCCCTAAATTAGCTTACGTGGAACTTTCATCATCCAACACCAGAATATTTAAGTATCAAAATAAGAAAAGAATGGAGTGACAATAAATATCGCTCGACATTGGAAAGTGATTTGAAGACCTTTTATTTTTCGTAGTGTCATGTGTTATGTTTGGATTATTTTTTGAAGGCATGGAATATTCAAGTTTAAAATCATTGTTGAATACAAAATGTTGTGTTTTCTTGAAACCTTTTTTGGTCTTGTTTTAGGTTTGATGTTAAACTGATTCATTGGATTAGTTTTGATCGAGCTAATTCTAGAGTGAGTCGTCTTGGTATTTAAGAGTGACCATCATAGATTCCAAGTTCGATCTAAGAATTATTCATCCTTCTAACGAGCTTTTGGTTAAAATCATCTGTTAAGTCAGCTTTTGGTTGAAATCATCAGTTAAGTTAGCTTTACTTGTGAAAGTTTGCAAATCCAGCATGGTTGGCGCTTAAGAAGAATAAAAGATGGAGCAAATGGAAAAACTATCACTCGACCATAAAAGAGCTTATTAGCGTTTATTTGATGCTAATAGTGGACCATTGTCTTTGTAGATCTGCTGCTTCGAGAACTCGTAAGCTTTTTGGATATTTGTTTTGATTTCGTGGTAATACTCTACGCAATGCTCAAAACTCCTCTTCTACTCGGGATCACTCTTATTCTTACTTAGTTTGGAGAAGGAATTCAGGTTTCAATCGGCCTGCTTCATCGTTAGATTAATGGATATAAGCGAGAGTTCGGGAGGTCGGCCGAGATTGTATGCGAATCGTTGA

mRNA sequence

ATGAAGAACACGAAGAACACGAAGAACAAGGCTAGCCGTTGCGAAGAACACGCCGAGAACGCCATGATTCCGTTGCTGCTATTGTTGGAAGCAAGGTTTCAATCGGCCTGCTTCATCGTTAGATTAATGGATATAAGCGAGAGTTCGGGAGGTCGGCCGAGATTGTATGCGAATCGTTGA

Coding sequence (CDS)

ATGAAGAACACGAAGAACACGAAGAACAAGGCTAGCCGTTGCGAAGAACACGCCGAGAACGCCATGATTCCGTTGCTGCTATTGTTGGAAGCAAGGTTTCAATCGGCCTGCTTCATCGTTAGATTAATGGATATAAGCGAGAGTTCGGGAGGTCGGCCGAGATTGTATGCGAATCGTTGA

Protein sequence

MKNTKNTKNKASRCEEHAENAMIPLLLLLEARFQSACFIVRLMDISESSGGRPRLYANR
Homology
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BLAST of Carg25589 vs. NCBI nr
Match: KAG7021032.1 (hypothetical protein SDJN02_17720, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.2 bits (295), Expect = 2.3e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MKNTKNTKNKASRCEEHAENAMIPLLLLLEARFQSACFIVRLMDISESSGGRPRLYANR 60
          MKNTKNTKNKASRCEEHAENAMIPLLLLLEARFQSACFIVRLMDISESSGGRPRLYANR
Sbjct: 1  MKNTKNTKNKASRCEEHAENAMIPLLLLLEARFQSACFIVRLMDISESSGGRPRLYANR 59

The following BLAST results are available for this feature:
BLAST of Carg25589 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7021032.12.3e-23100.00hypothetical protein SDJN02_17720, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25589 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25589 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25589 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25589-RACarg25589-RAmRNA