Carg25539 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25539
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr17: 8961864 .. 8962445 (-)
RNA-Seq Expression	Carg25539
Synteny	Carg25539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAATACCCCGCCCAGCAATTGGCCCTCAACAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAGCCGGATAAGAGTAATAAGCGTCATCTTTTGGAAGTGTTCTCAGATGGAATCACAATCCTTTATTTTATTCGAATTTAAGTTCTAAATGATTGCATGATGTCCTTTTCCAATCTTTGTATATAAATGGGATAAATCATTTCATTTGATCAATCTAGTGTGATGGTGCTTCTATTTATATGTTATCATCCTATATTTTATTTAAGTGGTTATGTGTTTATTTGCTCTTAATAAAATATAAATGGAGTGGAACCAGATTCATGGTTGCAAAATCCGGAACTCAAATTCATGGTTGCAAAATCCGGAACTCAAATTCATGGTTGCAAACCCGGAGTTGATGGATAACAAATTCCTATTTTAGTGGTAGCCGCCATTGATGCCCTCTCCAGCTCCCTCTTTTCACCAGTGGCTGAATTTTCCAGCCTCACCTCCTACTCCTACTCGAAGGACAATCAGTTCTTCGCCTTCGATCCTCTCTCTGATCTCTGGCTCCTCCTCCTAACTTGCCTCTGA

mRNA sequence

ATGCAGAATACCCCGCCCAGCAATTGGCCCTCAACAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAGCCGGATAAGATGGTAGCCGCCATTGATGCCCTCTCCAGCTCCCTCTTTTCACCAGTGGCTGAATTTTCCAGCCTCACCTCCTACTCCTACTCGAAGGACAATCAGTTCTTCGCCTTCGATCCTCTCTCTGATCTCTGGCTCCTCCTCCTAACTTGCCTCTGA

Coding sequence (CDS)

ATGCAGAATACCCCGCCCAGCAATTGGCCCTCAACAAGAAGCAAGAAGCAAGAAGCAAGAAGCAAGAAGCAGCCGGATAAGATGGTAGCCGCCATTGATGCCCTCTCCAGCTCCCTCTTTTCACCAGTGGCTGAATTTTCCAGCCTCACCTCCTACTCCTACTCGAAGGACAATCAGTTCTTCGCCTTCGATCCTCTCTCTGATCTCTGGCTCCTCCTCCTAACTTGCCTCTGA

Protein sequence

MQNTPPSNWPSTRSKKQEARSKKQPDKMVAAIDALSSSLFSPVAEFSSLTSYSYSKDNQFFAFDPLSDLWLLLLTCL

Homology

[Close]

BLAST of Carg25539 vs. NCBI nr
Match: KAG7014495.1 (hypothetical protein SDJN02_24673, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MQNTPPSNWPSTRSKKQEARSKKQPDKMVAAIDALSSSLFSPVAEFSSLTSYSYSKDNQF 60
          MQNTPPSNWPSTRSKKQEARSKKQPDKMVAAIDALSSSLFSPVAEFSSLTSYSYSKDNQF
Sbjct: 1  MQNTPPSNWPSTRSKKQEARSKKQPDKMVAAIDALSSSLFSPVAEFSSLTSYSYSKDNQF 60

Query: 61 FAFDPLSDLWLLLLTCL 78
          FAFDPLSDLWLLLLTCL
Sbjct: 61 FAFDPLSDLWLLLLTCL 77

[Close]

BLAST of Carg25539 vs. NCBI nr
Match: XP_023549422.1 (ribosomal protein S6 kinase 2 alpha-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 54.3 bits (129), Expect = 5.4e-04
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 39 LFSPVAEFSSLTSYSYSKDNQFFAFDPLSDLWLLL 74
          LFSPVAEFS+LT  S SKDNQFFAFDPLSDLW  L
Sbjct: 7  LFSPVAEFSNLT--SDSKDNQFFAFDPLSDLWFRL 39

The following BLAST results are available for this feature:

BLAST of Carg25539 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7014495.1	1.6e-32	100.00	hypothetical protein SDJN02_24673, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023549422.1	5.4e-04	82.86	ribosomal protein S6 kinase 2 alpha-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Carg25539 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25539 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25539 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25539-RA	Carg25539-RA	mRNA