Carg25530 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25530
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr17: 9006316 .. 9006897 (+)
RNA-Seq ExpressionCarg25530
SyntenyCarg25530
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATTTCCTGTTGAAATACCAAACTCCAAGATATTTGATGGCTTGGAGATCCTTTTAAGGTATGAATTGCCTGTTTACTTTACCATTTATTCATTGTTAATGACCTTATTTAGTTGATCATGAGACTCTGCTGATATCTTTGTTTCTTGAAGTTCATATTGATTGAATTGAAAAATTGCAGATGTTAATTCCATTCTGAAAAATGTTAACAACGTGCGTTCAAGGGCCTTTTAGATATCTTTTAGAGTTCGAGAACTAAATAGATGTAAACTTGATAGTTAACGATGTGCGTTCAAGGACCTTTTAGATATCTTTTAGAGTTTAAGGACTAAATCGATATGCGATGTGCGTTCAAGGACCTTCTAGATATCTTTTAGAGTTCAAGGACTAAATCGACATGAAAGTCAATGTCGGTGTGCATGCATGATGGTTCTTCAACTGCTATCAAATTTGTTTTGAAGGAACTCCTTGTTTGCAAAGCTGAAGAAAAGAAGGCTTTTGAGACCGACCACTTTCGTGTACTCTTATATATTCTCTGCGACACAGGACGGACAGATTCGACTCTCAATTTTATCTTAG

mRNA sequence

ATGGAATTTCCTGTTGAAATACCAAACTCCAAGATATTTGATGGCTTGGAGATCCTTTTAAGGAACTCCTTGTTTGCAAAGCTGAAGAAAAGAAGGCTTTTGAGACCGACCACTTTCGTGTACTCTTATATATTCTCTGCGACACAGGACGGACAGATTCGACTCTCAATTTTATCTTAG

Coding sequence (CDS)

ATGGAATTTCCTGTTGAAATACCAAACTCCAAGATATTTGATGGCTTGGAGATCCTTTTAAGGAACTCCTTGTTTGCAAAGCTGAAGAAAAGAAGGCTTTTGAGACCGACCACTTTCGTGTACTCTTATATATTCTCTGCGACACAGGACGGACAGATTCGACTCTCAATTTTATCTTAG

Protein sequence

MEFPVEIPNSKIFDGLEILLRNSLFAKLKKRRLLRPTTFVYSYIFSATQDGQIRLSILS
Homology
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BLAST of Carg25530 vs. NCBI nr
Match: KAG7014504.1 (hypothetical protein SDJN02_24682, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.7 bits (291), Expect = 6.8e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEFPVEIPNSKIFDGLEILLRNSLFAKLKKRRLLRPTTFVYSYIFSATQDGQIRLSILS 60
          MEFPVEIPNSKIFDGLEILLRNSLFAKLKKRRLLRPTTFVYSYIFSATQDGQIRLSILS
Sbjct: 1  MEFPVEIPNSKIFDGLEILLRNSLFAKLKKRRLLRPTTFVYSYIFSATQDGQIRLSILS 59

The following BLAST results are available for this feature:
BLAST of Carg25530 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014504.16.8e-23100.00hypothetical protein SDJN02_24682, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25530 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25530 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25530-RACarg25530-RAmRNA