Carg25473 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25473
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Location	Carg_Chr20: 5208388 .. 5213139 (-)
RNA-Seq Expression	Carg25473
Synteny	Carg25473

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTATTACTATTTATTTTGGGGGCAAAACTTCCGTCTAGCGTTTATACTTGGAGCTCTCTCTGGCCGTAGCTCTCCTTCGCGCTCTCTTTCTCCATCTCAGGTTGTGTGTTTGATCGGTGGATCAATGGCGTCGAGTCTTTTCAAAGCACTTGTTGAATCTTCCTCCAAAATTCCTTCTTCGGCTAGAAGTCTGAGCCTTGTTAGCAACCAAATCGGCCAGCACACCGCCAAATGGATGCAGGTATCCAGTAATTTATCGCAAATCCTTCCTTTGACATTTATTGCTTCCATGCCTGTGTTTCAATTGATCTCTGAAGATTTTGTGTTCTTGTTTATAATTCGTTGTTCTTTCTAACTTTACCCGAGAACTGATTTAGAGATTGGGTTTGAAGGCTCCCAATTTATGTGGTGGTTTTCTTTTCTTTTTTTTTTTTTTGATCGATTTTTTTTATGTGGAAATTAATTCATGTTATTTGAAGAGAATGATGGATGCTAAACCTTTTGGTGCTCGTCTTTCATCGAAGCAAATTTATATAAACTATACAAATATTTTATTTCTCACCTAGCTATCTCCCCCTCGCCTCCCTGCTTAGATTATGTATTATCTTCTTCATGTTCTGTTGGTTTTATATGTACATGAAGATTATCAGAGAACATGCCTCACCTTTAGAAATTTTAAAGAGCTATTTCTCTATATCCTTTTCTCTTGATAGCCACCTGCCAAATTTTTATTTTTGATTAGAAACATGAACTTTTCGTTGATATTTGAGAACTGACGAGCTATCATCTTCCTAAAGAATGTATAAAAGTAGAAAAGAGAACTCATCCAGGTTGAAAAAAGAAGAAAAAAAAAAAACGAGGAGCTGTCATGAATAACAAATCTTCCGAATTTCTTGCATCCTGGTGCATAAGGAGCAGGTGTTGGTATCTTCTTGTACGAGTGCATAGCAATGCCAGAAAAATTTCCCTCGGATCATTTTTTTATCACCATGTCTGTTTAGAACTTTTGGCTCTTCTTCTAGGGTTGATTTGAGCTCTTCTTTTGAACTCGATAATTGACATCTACATGCCTAGTATTCTCTAGTTGGAACTTGTTTATTCATTTTCATTTCCTTGCTCGGCAATATCTAAGTCTTCTACCACAAAACTGCATTGCCATTGCGTTAAAATGATTGCAATAGGCTTGCACTTCCAGGTTGAAGAAGTAACCCACCACCTCATAGTACAATTGAGCAGAAGGCTTCTTCAACTCACTTCATGTCATACCTTCTATGACCTTCGGGAATAAAAGTTTCTTACCAACTACATGACCTGTGTATTTAAGTTAGCTGCCTAACTAAGATTTTGTCTTTCACGCCTACGTTTTTCTGAGTTGGACCCTATGAATGCAATTTACTTTTCTCAGGGTACCACATTCTCCTTCAACAGGTTCTATGACTGTTGATGTTGCTTTCTAATGGCTTTCATATCTTCTCAATTATTATTATTACTATGTATAAGATTTTTTCATTAAGATGCAGGCCATGGAGAGGCAATCCCTGGAAAAAAAGGAACTATGACTACCAGAAGAGGTTCCAATTATTAAGAACCAAAAGTAAAGGATAGTTACAAACCAAAAAGTGGGGACACTTAGATAGAGGTTTGATATAGGCCAATCCTCAGACCTCCTCCCAAGAATCCTTAACTGTTTTAAAAATCCTCCGATTTCCTTCAAACCAAATATACCCTAAAATAGCTAAATTAGCTAAGCTGCTTGCCTCAAAACTCCCTTTACCACCAATGCTGGTGCAACATGCAACTACTTTTACCCATCACTGAACAGTAATCCTTTCCTTGCATTGAACCAAGTCAACACCACAATGGTTTTGAGCTCTATCCCGCAGATTTATTGCAATGTGACATATTTATAGAGATCTTGCCTCGAATTGTTTGCAGAGTGCCTGGTTTCGTGAACTGGTGTGTTTTGTGTAGTCATGGACATATGGGAAAAAGATTGAAACTATGCTTCTGGGTATGCCCTTTTCTTCATGAGTTTGGAGCCGTTTTTCATTTAGTTTTGGATTATTTGTTGTTTGAGGTTGAGCATTCATGAGATGATGGATGGTGTTCAGGTTGAAAATGGGGTTTTTTGGCGTAGTTTATTTGGCTAGAAAGGAAAAATAGAATGTTTGTTCAGTTAGATGGATGGTGGGATGATATTTAGGATTTGATGCATGCTCTTTTTTGGACTCATAACTCAGATTTAAAAACTGGTTAGTGATTATCCTTTTTTTGTTACCAAAAGTTGGAGTTCTTTGTCGTGAATTTTCTTTAACATGTTAACACCAGTCTTAACTACTTGGTCCAATCTGTTCCATGTCCAGCCCCTAGATAGTGCCAGATGGTCCCTCCTGACTTGAAAGTTGGTTTTCTCGTATAGAAAGAAAAAGGAATATAGAAAGATTGTCAACTGTAGAATGCATGTCCCATATGAATCCCTGCCTTATGAATCTCCAGGAAATCATGAGCAACACCCTTGGATGTTTCACTGACCTAGGTTCTTCTATTGAATGTTCTTTCCAACCCAACATCTCATTGCCTTGCAGTGGTGATGCCACCGTTTTAAGAATTTGTATTCCAAGGAAACCATAATCTTTGTTTATCCTAACAGCTAATCTGTTGCACGGTCACAGCATGTAACATTCTTATGCACTTGAAGCAAGTCAGCCCTTCTAGTGTGCTTGCTTGTAAGAGTAGTTGCCTAATAACCAAGTCGGAGAGAATGTCATTAGCAGATTTTTTTTTTTTTTTTATCACTCTATTGATTTATTTTATCAGCTCTTGGTTAAAATAGAAGACTAGAGGACTCTTTCTTGTATAAGATTTTACATCCATGTCCATTAACTAGGATTAAGTCAGTCTAACAGCAAAGACTTTATAGATTTTTCCTATTTTGTAATATGTACACCATCTTAGATATATCTAAATTATTCTAGATAACCTGGATCTTTTTGGAGTGCTCTAAAGTATAACATGAGAACTGTCCATGGTTTTTTATTATTATTATTTAAGTGTAGGATTCTATCGAACTGCAGATCAATTCTTCATAACTCATGCATTTTTCACATTTTGAAGAAGTTTTGAGTTGTGAAAGTAATGTCTCATGTTTTGATCATTGAAAAGTTGTTTCTCTTTACTTCAAAGATACTTTTGCCTGTAGAAACTCTTCTTGCTCCTTAGAGACAGTAGAGTTAATCATTGAAAGAGATATTCTTTCTTTGTTCAATGATATTTCTGCCCGCAGCAGAACTCTTCTTGCTCCATTAAAGGAGAATGCTATTTTTATTCGATACTCCCTCAATTTTTTTTTTTTTTTTTACTGCATTAAGGATGTGGCACATGAAGGAATTGAACTTAATTCATCTTGCAGTCTGCGTAACTAAATCAACCGGCCTGCTAATAAAATAGCTTACTTTGGTGGGGCTCAATTTTCTTAATTCTTGGCAATTTGGTTGGTTTTCTTCATTGTGATTGCTTGAGACAACTAGGTTTTCATCAACATCTACTGTGTTGCTTAACTATTCTACTTGTACCATAGAGCTCGTTGAGTTATCCCTGTTCCCAAAGCTGCAAGTTTTTCATATATTTTTTTTTTCCAATATCTGTATTCTCTTCAGTACAGACGCCGTGTTGCAGGCTGTTGGTGCGTTTTATAACTGCATCAATTTCAATGGTCTTGTTAATTAACTCTTCCATTTTCAAATGATATCTCGTGACTTCATTTTGCTTTTGGGAAATTGTCTGGATTACTGTTCTCTTTTAATAATTGATACATTGTTTGGCATGTTTGGATCTCGAATTTTCTTTGGCATGACTTCACAACATTTTTCTTTCTTTCCATCTATTTGCTTCAATTATTGATCGTCAATCAAGTTCAACTGACTGTTGAGACATGATATAGTTATTTTTATTTCTTTCATTTACTTCTAAGAAATATCCAACCGTTTTGGGGGGATAGATTCTACTCTTTGTGATCCTATCCAATGATGAAGGATATATGAAAGTTCTACTTTATTTCCATATCTAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAACGAGGTTCCACCGATCAAGGTCGAAGGCCGTATCGTTGCTTGTGAGGGAGGTTAGTCCATCTCCATACATGTATCCATGCTTGCATATAATCTAAGTAAGTAATTTATTAAGGAAGTTGTGATTCCTTATTTTGATTCAAACAAACTGTTGCTGATTGCAGACAGCAATCCTGCCCTTGGTCATCCAATCGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGCTACACTCAGGACCATCATCACTAGAAGATCTGCAAGTGATCATTCCAGACAGCAACCCTGAACATGGAAAGACAATACCCTACCTTTTCCAAACTTGAATTCTGTAACGAAATGACTGTCACGGTTGTACTCTGCCTGCATAAATAGGGATTTGGGAATTCCATTCACTCACACTTGGCTGGTTCCTTTGTCTTTGCCAAATTTGTTTCATTGCCGTGTCTAATGACTTTATCTTGTTGACTCGAATTCCAATAAAAGGTTTTTGATGTCTTGGAGTTGCAAGCTTGAAATGACCCACTTTTTCATTTCTAGCCTCGATCTTATGTGCCTAGCATAGTATCACCGAGTACTAATACTTTATTTCTAAAATGTGCTTGACTTTGACAATAGGGGTATGATCCAT

mRNA sequence

ATTATTACTATTTATTTTGGGGGCAAAACTTCCGTCTAGCGTTTATACTTGGAGCTCTCTCTGGCCGTAGCTCTCCTTCGCGCTCTCTTTCTCCATCTCAGGTTGTGTGTTTGATCGGTGGATCAATGGCGTCGAGTCTTTTCAAAGCACTTGTTGAATCTTCCTCCAAAATTCCTTCTTCGGCTAGAAGTCTGAGCCTTGTTAGCAACCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAACGAGGTTCCACCGATCAAGGTCGAAGGCCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGTCATCCAATCGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGCTACACTCAGGACCATCATCACTAGAAGATCTGCAAGTGATCATTCCAGACAGCAACCCTGAACATGGAAAGACAATACCCTACCTTTTCCAAACTTGAATTCTGTAACGAAATGACTGTCACGGTTGTACTCTGCCTGCATAAATAGGGATTTGGGAATTCCATTCACTCACACTTGGCTGGTTCCTTTGTCTTTGCCAAATTTGTTTCATTGCCGTGTCTAATGACTTTATCTTGTTGACTCGAATTCCAATAAAAGGTTTTTGATGTCTTGGAGTTGCAAGCTTGAAATGACCCACTTTTTCATTTCTAGCCTCGATCTTATGTGCCTAGCATAGTATCACCGAGTACTAATACTTTATTTCTAAAATGTGCTTGACTTTGACAATAGGGGTATGATCCAT

Coding sequence (CDS)

ATGGCGTCGAGTCTTTTCAAAGCACTTGTTGAATCTTCCTCCAAAATTCCTTCTTCGGCTAGAAGTCTGAGCCTTGTTAGCAACCAAATCGGCCAGCACACCGCCAAATGGATGCAGGATACAAGTAAGAAATCACCCATGGAGTTGATCAACGAGGTTCCACCGATCAAGGTCGAAGGCCGTATCGTTGCTTGTGAGGGAGACAGCAATCCTGCCCTTGGTCATCCAATCGAGTTCATATGCCTCGATCGGGAGGAGCCTGCCGTGTGCAAGTACTGTGGCCTGCGCTACACTCAGGACCATCATCACTAG

Protein sequence

MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH

Homology

[Close]

BLAST of Carg25473 vs. NCBI nr
Match: XP_023511819.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Cucurbita pepo subsp. pepo] >KAG6571206.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011009.1 NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 211.8 bits (538), Expect = 2.7e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. NCBI nr
Match: XP_022943963.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita moschata])

HSP 1 Score: 210.3 bits (534), Expect = 7.9e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNP LGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPGLGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. NCBI nr
Match: XP_022986645.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita maxima])

HSP 1 Score: 209.9 bits (533), Expect = 1.0e-50
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFKALVESSSK PSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. NCBI nr
Match: XP_038900460.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Benincasa hispida])

HSP 1 Score: 208.4 bits (529), Expect = 3.0e-50
Identity = 100/103 (97.09%), Postives = 103/103 (100.00%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFKALVESSSKIPSSAR+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKIPSSARNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGD+NPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDNNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. NCBI nr
Match: XP_022148513.1 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Momordica charantia])

HSP 1 Score: 204.9 bits (520), Expect = 3.3e-49
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MAS+LFK ++ESSSK PSSAR+LSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASTLFKTIIESSSKFPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RI+ACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIIACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. ExPASy Swiss-Prot
Match: Q9M9M6 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g03070 PE=1 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 7.2e-39
Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQ--------IGQHTAKWMQDTSKKSPMELINE 60
           MAS+L KAL+ S   +PSS R+ S+ + Q        +G HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           VPPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

[Close]

BLAST of Carg25473 vs. ExPASy TrEMBL
Match: A0A6J1FXJ3 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111448533 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 3.8e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNP LGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPGLGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. ExPASy TrEMBL
Match: A0A6J1JEL4 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111484323 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.0e-51
Identity = 102/103 (99.03%), Postives = 102/103 (99.03%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFKALVESSSK PSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKALVESSSKTPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. ExPASy TrEMBL
Match: A0A6J1D4A8 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111017141 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.6e-49
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MAS+LFK ++ESSSK PSSAR+LSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASTLFKTIIESSSKFPSSARNLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RI+ACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIIACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. ExPASy TrEMBL
Match: A0A1S3CI88 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103501074 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 6.1e-49
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS IPSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG
Sbjct: 1   MASSLFKLLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 103

[Close]

BLAST of Carg25473 vs. ExPASy TrEMBL
Match: A0A0A0LNG2 (zf-CHCC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432800 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 1.5e-47
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQIGQHTAKWMQDTSKKSPMELINEVPPIKVEG 60
           MASSLFK L+ESSS IPSS R+LSLV+NQIGQHTAKWMQDTSKKSPMELINEVPPIKV G
Sbjct: 1   MASSLFKVLLESSSNIPSSTRNLSLVANQIGQHTAKWMQDTSKKSPMELINEVPPIKVAG 60

Query: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQ HHH
Sbjct: 61  RIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQGHHH 103

[Close]

BLAST of Carg25473 vs. TAIR 10
Match: AT3G03070.1 (NADH-ubiquinone oxidoreductase-related )

HSP 1 Score: 161.0 bits (406), Expect = 5.1e-40
Identity = 78/111 (70.27%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MASSLFKALVESSSKIPSSARSLSLVSNQ--------IGQHTAKWMQDTSKKSPMELINE 60
           MAS+L KAL+ S   +PSS R+ S+ + Q        +G HTAKWMQD SKKSPMELI+E
Sbjct: 1   MASNLLKALIRSQI-LPSSRRNFSVATTQLGIPTDDLVGNHTAKWMQDRSKKSPMELISE 60

Query: 61  VPPIKVEGRIVACEGDSNPALGHPIEFICLDREEPAVCKYCGLRYTQDHHH 104
           VPPIKV+GRIVACEGD+NPALGHPIEFICLD  EPA+CKYCGLRY QDHHH
Sbjct: 61  VPPIKVDGRIVACEGDTNPALGHPIEFICLDLNEPAICKYCGLRYVQDHHH 110

The following BLAST results are available for this feature:

BLAST of Carg25473 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023511819.1	2.7e-51	100.00	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial-like [Cucur...	[more]
XP_022943963.1	7.9e-51	99.03	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita ...	[more]
XP_022986645.1	1.0e-50	99.03	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Cucurbita ...	[more]
XP_038900460.1	3.0e-50	97.09	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Benincasa ...	[more]
XP_022148513.1	3.3e-49	93.20	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial [Momordica ...	[more]

BLAST of Carg25473 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M9M6	7.2e-39	70.27	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Arabidop...	[more]

BLAST of Carg25473 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FXJ3	3.8e-51	99.03	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucurbit...	[more]
A0A6J1JEL4	5.0e-51	99.03	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucurbit...	[more]
A0A6J1D4A8	1.6e-49	93.20	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Momordic...	[more]
A0A1S3CI88	6.1e-49	94.17	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial OS=Cucumis ...	[more]
A0A0A0LNG2	1.5e-47	92.23	zf-CHCC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G432800 PE=...	[more]

BLAST of Carg25473 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03070.1	5.1e-40	70.27	NADH-ubiquinone oxidoreductase-related	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.60.260.40	q5lls5 like domains	coord: 49..99 e-value: 7.4E-16 score: 59.6
None	No IPR available	PANTHER	PTHR13156	NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT	coord: 1..103
None	No IPR available	PANTHER	PTHR13156:SF1	BNAC04G49950D PROTEIN	coord: 1..103
IPR019401	Zinc finger, CHCC-type	PFAM	PF10276	zf-CHCC	coord: 60..97 e-value: 6.2E-15 score: 55.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25473-RA	Carg25473-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
cellular_component	GO:0005747	mitochondrial respiratory chain complex I