Carg25471 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25471
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	protein SRC1-like
Location	Carg_Chr06: 5386871 .. 5387167 (+)
RNA-Seq Expression	Carg25471
Synteny	Carg25471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGGATCATGGAGAAAATAGGCGAGAAGCTCCACATCGGGGGAGACCACAAGGGGGAGCACCACGAGAAGGACAAGCACGAGCACGAGCACGAGCACGAGAAGAAGCACGGCGAGAAGTCAGAGCACCATGGGGAAGGGCACAAGGAAGGCCTGATGGAGAAGATCAAGGACAAGATCCATGGGGATCATCACGATGAGAAGGGTGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGAGCACCACGAGGGCGGCCACAGCAGCAGCAGCGACAGCGACAGCGACTGA

mRNA sequence

ATGGCAGGGATCATGGAGAAAATAGGCGAGAAGCTCCACATCGGGGGAGACCACAAGGGGGAGCACCACGAGAAGGACAAGCACGAGCACGAGCACGAGCACGAGAAGAAGCACGGCGAGAAGTCAGAGCACCATGGGGAAGGGCACAAGGAAGGCCTGATGGAGAAGATCAAGGACAAGATCCATGGGGATCATCACGATGAGAAGGGTGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGAGCACCACGAGGGCGGCCACAGCAGCAGCAGCGACAGCGACAGCGACTGA

Coding sequence (CDS)

ATGGCAGGGATCATGGAGAAAATAGGCGAGAAGCTCCACATCGGGGGAGACCACAAGGGGGAGCACCACGAGAAGGACAAGCACGAGCACGAGCACGAGCACGAGAAGAAGCACGGCGAGAAGTCAGAGCACCATGGGGAAGGGCACAAGGAAGGCCTGATGGAGAAGATCAAGGACAAGATCCATGGGGATCATCACGATGAGAAGGGTGAGAAGAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGAGCACCACGAGGGCGGCCACAGCAGCAGCAGCGACAGCGACAGCGACTGA

Protein sequence

MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD

Homology

[Close]

BLAST of Carg25471 vs. NCBI nr
Match: KAG7028450.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 179.5 bits (454), Expect = 1.4e-41
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60
          MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDK
Sbjct: 1  MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60

Query: 61 IHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 99
          IHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61 IHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 98

[Close]

BLAST of Carg25471 vs. NCBI nr
Match: KAG6596975.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 164.1 bits (414), Expect = 6.2e-37
Identity = 95/102 (93.14%), Postives = 96/102 (94.12%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGD----HKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEK 60
           MAGIMEKIGEKLHIGGD    HKGEHHEKDK  HEHEHEKKHGEKSEHHGEGHKEGLMEK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDK--HEHEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 99
           IKDKIHGDHHD+KGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61  IKDKIHGDHHDDKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 100

[Close]

BLAST of Carg25471 vs. NCBI nr
Match: XP_023538905.1 (protein SRC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.5 bits (410), Expect = 1.8e-36
Identity = 97/106 (91.51%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGD----HKGEHHEKDKHEHE---HEHEKKHGEKSEHHGEGHKEGL 60
           M+GIMEKIGEKLHIGGD    HKGEHHEKDKHEHE   HEHEKKHGEKSEHHGEGHKEGL
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDKHEHEKDKHEHEKKHGEKSEHHGEGHKEGL 60

Query: 61  MEKIKDKIH-GDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 99
           MEKIKDKIH GDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61  MEKIKDKIHGGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 106

[Close]

BLAST of Carg25471 vs. NCBI nr
Match: XP_022942109.1 (protein SRC1-like [Cucurbita moschata])

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 94/102 (92.16%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1  MAGIMEKIGEKLHIGGD----HKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEK 60
          MAGIMEKIGEKLHIGGD    HKGEHHEKDK    HEHEKKHGEKSEHHGEGHKEGLMEK
Sbjct: 1  MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDK----HEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61 IKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 99
          IKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61 IKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 98

[Close]

BLAST of Carg25471 vs. NCBI nr
Match: XP_022974702.1 (protein SRC1-like [Cucurbita maxima])

HSP 1 Score: 147.5 bits (371), Expect = 6.0e-32
Identity = 92/105 (87.62%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGD----HKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEK 60
           M+GIMEKIGEKLHIGGD    HKGEHHEKDK    HEHEKKHGEKSEHHGEGHKEGLMEK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDK----HEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIH--GDHHDEKGE-KKKKKEKKKKGEHHEGGHSSSSDSDSD 99
           IKDKIH  GDHHDEKGE KKKKKEKKKKGEH EGGHSSSSDSDSD
Sbjct: 61  IKDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Carg25471 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-15
Identity = 66/104 (63.46%), Postives = 78/104 (75.00%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGG----DHKGEHHEKDKHEHEHEHEKKH-GEK--SEHHGEGHKEGL 60
           M+GI+ KI E LH+GG    +HKGEHH + K EH+ EH  +H GE    +HHGE HKEGL
Sbjct: 1   MSGIIHKIEETLHVGGHKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGE-HKEGL 60

Query: 61  MEKIKDKIHGDHHDEKGEKKKKKEKKKKGEHHE-GGHSSSSDSD 97
           ++KIKDKIHGD HD KGEKKKKK+KKKK   H+  GHSSSSDSD
Sbjct: 61  VDKIKDKIHGDGHD-KGEKKKKKDKKKKEHGHDHHGHSSSSDSD 102

[Close]

BLAST of Carg25471 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 4.6e-11
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 1  MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60
          MAG++ KIG+ LHIGG +K   H+K++   +H  E K GE        HKEG+++KIKDK
Sbjct: 1  MAGLINKIGDALHIGGGNKEGEHKKEEEHKKHVDEHKSGE--------HKEGIVDKIKDK 60

Query: 61 IHGDH---HD-----EKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 99
          IHG     HD       GEKKKKK+KK+K  H +G HSSSSDSDSD
Sbjct: 61 IHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSDSD 98

[Close]

BLAST of Carg25471 vs. ExPASy TrEMBL
Match: A0A6J1FQD3 (protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.9e-36
Identity = 94/102 (92.16%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 1  MAGIMEKIGEKLHIGGD----HKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEK 60
          MAGIMEKIGEKLHIGGD    HKGEHHEKDK    HEHEKKHGEKSEHHGEGHKEGLMEK
Sbjct: 1  MAGIMEKIGEKLHIGGDHKGEHKGEHHEKDK----HEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61 IKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 99
          IKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD
Sbjct: 61 IKDKIHGDHHDEKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 98

[Close]

BLAST of Carg25471 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-32
Identity = 92/105 (87.62%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGE----HHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEK 60
           M+GIMEKIGEKLHIGGDHKGE    HHEKDK    HEHEKKHGEKSEHHGEGHKEGLMEK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGDHHEKDK----HEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIH--GDHHDEKGE-KKKKKEKKKKGEHHEGGHSSSSDSDSD 99
           IKDKIH  GDHHDEKGE KKKKKEKKKKGEH EGGHSSSSDSDSD
Sbjct: 61  IKDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Carg25471 vs. ExPASy TrEMBL
Match: A0A6J1IAZ2 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.9e-32
Identity = 92/105 (87.62%), Postives = 93/105 (88.57%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGD----HKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEK 60
           M+GIMEKIGEKLHIGGD    HKGEHHEKDK    HEHEKKHGEKSEHHGEGHKEGLMEK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKGEHKGEHHEKDK----HEHEKKHGEKSEHHGEGHKEGLMEK 60

Query: 61  IKDKIH--GDHHDEKGE-KKKKKEKKKKGEHHEGGHSSSSDSDSD 99
           IKDKIH  GDHHDEKGE KKKKKEKKKKGEH EGGHSSSSDSDSD
Sbjct: 61  IKDKIHGGGDHHDEKGEKKKKKKEKKKKGEHQEGGHSSSSDSDSD 101

[Close]

BLAST of Carg25471 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.3e-23
Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60
           M+G +EKIGEKLHIGGDHKGEHH+  K EH  EH KKH +K EHHGEGHKEG++EKIKDK
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEH-KKHEKKEEHHGEGHKEGIIEKIKDK 60

Query: 61  IHG--DHHDEKGEKKKKKEKKKKGEH---HEGGHSSSSDSDSD 99
           IHG   HHDEKGE KKKKEKKKKGEH   H GG  SSSDSDSD
Sbjct: 61  IHGGDGHHDEKGE-KKKKEKKKKGEHGHEHHGG-DSSSDSDSD 100

[Close]

BLAST of Carg25471 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.3e-23
Identity = 78/103 (75.73%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 1   MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60
           M+G +EKIGEKLHIGGDHKGEHH+  K EH  EH KKH +K EHHGEGHKEG++EKIKDK
Sbjct: 1   MSGFIEKIGEKLHIGGDHKGEHHDAHKGEHHDEH-KKHEKKEEHHGEGHKEGIIEKIKDK 60

Query: 61  IHG--DHHDEKGEKKKKKEKKKKGEH---HEGGHSSSSDSDSD 99
           IHG   HHDEKGE KKKKEKKKKGEH   H GG  SSSDSDSD
Sbjct: 61  IHGGDGHHDEKGE-KKKKEKKKKGEHGHEHHGG-DSSSDSDSD 100

[Close]

BLAST of Carg25471 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 68.6 bits (166), Expect = 3.3e-12
Identity = 55/106 (51.89%), Postives = 69/106 (65.09%), Query Frame = 0


Query: 1  MAGIMEKIGEKLHIGGDHKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLMEKIKDK 60
          MAG++ KIG+ LHIGG +K   H+K++   +H  E K GE        HKEG+++KIKDK
Sbjct: 1  MAGLINKIGDALHIGGGNKEGEHKKEEEHKKHVDEHKSGE--------HKEGIVDKIKDK 60

Query: 61 IHGDH---HD-----EKGEKKKKKEKKKKGEHHEGGHSSSSDSDSD 99
          IHG     HD       GEKKKKK+KK+K  H +G HSSSSDSDSD
Sbjct: 61 IHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSDSD 98

The following BLAST results are available for this feature:

BLAST of Carg25471 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7028450.1	1.4e-41	100.00	Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6596975.1	6.2e-37	93.14	Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023538905.1	1.8e-36	91.51	protein SRC1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022942109.1	4.0e-36	92.16	protein SRC1-like [Cucurbita moschata]	[more]
XP_022974702.1	6.0e-32	87.62	protein SRC1-like [Cucurbita maxima]	[more]

BLAST of Carg25471 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	1.1e-15	63.46	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]
Q9SLJ2	4.6e-11	51.89	Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1	[more]

BLAST of Carg25471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQD3	1.9e-36	92.16	protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1	[more]
A0A6J1I7B7	2.9e-32	87.62	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1	[more]
A0A6J1IAZ2	2.9e-32	87.62	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1	[more]
A0A5A7UF86	9.3e-23	75.73	Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3B8E4	9.3e-23	75.73	protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1	[more]

BLAST of Carg25471 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54410.1	3.3e-12	51.89	dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..98
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..98
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25471-RA	Carg25471-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding