Carg25443 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25443
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small nuclear ribonucleoprotein family protein
Location	Carg_Chr13: 6641960 .. 6642298 (+)
RNA-Seq Expression	Carg25443
Synteny	Carg25443

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

mRNA sequence

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Coding sequence (CDS)

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Protein sequence

MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

Homology

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 Small nuclear ribonucleoprotein-associated protein B, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 225.3 bits (573), Expect = 2.6e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 223.4 bits (568), Expect = 9.8e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQVG NVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_023001494.1 (uncharacterized protein LOC111495614 [Cucurbita maxima])

HSP 1 Score: 220.3 bits (560), Expect = 8.3e-54
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           M+QESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_011649337.1 (uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_014187 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 1.6e-52
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. NCBI nr
Match: XP_038893823.1 (uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893825.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893826.1 uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893827.1 uncharacterized protein LOC120082644 [Benincasa hispida])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 104/112 (92.86%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQES GSMVQ GSNVESNP+SLDRVGKVR+LLFRRMLIGIKDGRFFLGSFYC+DKQGNI
Sbjct: 1   MEQESEGSMVQDGSNVESNPESLDRVGKVRRLLFRRMLIGIKDGRFFLGSFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTR SSPSPMEQRCLGLILIPNSCRVSCH+DSTIDE+LALLSV
Sbjct: 61  ILQDAVEYRSTRHSSPSPMEQRCLGLILIPNSCRVSCHIDSTIDEKLALLSV 112

[Close]

BLAST of Carg25443 vs. ExPASy Swiss-Prot
Match: Q55A45 (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.9e-06
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 23  LDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ- 82
           + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ 
Sbjct: 4   MPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEK 63

Query: 83  RCLGLILIPNSCRVSCHVDSTIDEQLAL 110
           R LG+ILI     VS  V++   E+  L
Sbjct: 64  RTLGMILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of Carg25443 vs. ExPASy Swiss-Prot
Match: A4IGZ4 (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 87
           K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL 
Sbjct: 32  KLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFP-VREPRVLGLA 91

Query: 88  LIPNSCRVSCHVD 101
           ++P    VS  V+
Sbjct: 92  MVPGHHIVSIQVE 103

[Close]

BLAST of Carg25443 vs. ExPASy Swiss-Prot
Match: Q17QN3 (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of Carg25443 vs. ExPASy Swiss-Prot
Match: P63162 (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of Carg25443 vs. ExPASy Swiss-Prot
Match: Q60HD3 (Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9541 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0


Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

[Close]

BLAST of Carg25443 vs. ExPASy TrEMBL
Match: A0A6J1EKG3 (uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC111434149 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.7e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQVG NVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. ExPASy TrEMBL
Match: A0A6J1KMW6 (uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.0e-54
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           M+QESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. ExPASy TrEMBL
Match: A0A0A0LSZ5 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 7.6e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. ExPASy TrEMBL
Match: A0A5D3DAS2 (Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G00700 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.4e-51
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. ExPASy TrEMBL
Match: A0A1S3BAH4 (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 5.4e-51
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Carg25443 vs. TAIR 10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-37
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQ +  S   V S  E +    D + ++RKLLFR+ML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGS--DFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

[Close]

BLAST of Carg25443 vs. TAIR 10
Match: AT4G20440.2 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 23/84 (27.38%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 22  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSP 81
           S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ + 
Sbjct: 2   SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINE 61

Query: 82  SPMEQRCLGLILIPNSCRVSCHVD 101
              ++R LGL+L+     +S  V+
Sbjct: 62  EREDRRTLGLVLLRGEEVISMTVE 85

[Close]

BLAST of Carg25443 vs. TAIR 10
Match: AT4G20440.3 (small nuclear ribonucleoprotein associated protein B )

HSP 1 Score: 43.1 bits (100), Expect = 1.7e-04
Identity = 23/84 (27.38%), Postives = 44/84 (52.38%), Query Frame = 0


Query: 22  SLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRST-----RRSSP 81
           S+ +  K+ + +  RM + I+DGR  +G F   D+  N++L D  E+R       ++ + 
Sbjct: 2   SMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINE 61

Query: 82  SPMEQRCLGLILIPNSCRVSCHVD 101
              ++R LGL+L+     +S  V+
Sbjct: 62  EREDRRTLGLVLLRGEEVISMTVE 85

The following BLAST results are available for this feature:

BLAST of Carg25443 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023520042.1	2.6e-55	100.00	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo] >KAG7019507.1 ...	[more]
XP_022927243.1	9.8e-55	99.11	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_023001494.1	8.3e-54	97.32	uncharacterized protein LOC111495614 [Cucurbita maxima]	[more]
XP_011649337.1	1.6e-52	94.64	uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical ...	[more]
XP_038893823.1	3.8e-51	92.86	uncharacterized protein LOC120082644 [Benincasa hispida] >XP_038893824.1 unchara...	[more]

BLAST of Carg25443 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q55A45	3.9e-06	32.95	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
A4IGZ4	2.5e-05	39.73	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
Q17QN3	3.3e-05	38.27	Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN...	[more]
P63162	3.3e-05	38.27	Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=...	[more]
Q60HD3	3.3e-05	38.27	Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9...	[more]

BLAST of Carg25443 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EKG3	4.7e-55	99.11	uncharacterized protein LOC111434149 OS=Cucurbita moschata OX=3662 GN=LOC1114341...	[more]
A0A6J1KMW6	4.0e-54	97.32	uncharacterized protein LOC111495614 OS=Cucurbita maxima OX=3661 GN=LOC111495614...	[more]
A0A0A0LSZ5	7.6e-53	94.64	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=...	[more]
A0A5D3DAS2	5.4e-51	92.86	Small nuclear ribonucleoprotein family protein isoform 2 OS=Cucumis melo var. ma...	[more]
A0A1S3BAH4	5.4e-51	92.86	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]

BLAST of Carg25443 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G18372.1	2.0e-37	66.07	Small nuclear ribonucleoprotein family protein	[more]
AT4G20440.2	1.7e-04	27.38	small nuclear ribonucleoprotein associated protein B	[more]
AT4G20440.3	1.7e-04	27.38	small nuclear ribonucleoprotein associated protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 30..89 e-value: 2.9E-7 score: 30.1
None	No IPR available	GENE3D	2.30.30.100		coord: 27..104 e-value: 4.0E-17 score: 63.7
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 16..111
IPR034110	LSM domain containing 1	PANTHER	PTHR10701:SF5	FI06540P	coord: 16..111
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 28..100 e-value: 1.31443E-25 score: 89.1533
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 26..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25443-RA	Carg25443-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0031417	NatC complex