Carg25439 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25439
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	THUMP domain-containing protein 1 homolog
Location	Carg_Chr11: 4257508 .. 4261360 (-)
RNA-Seq Expression	Carg25439
Synteny	Carg25439

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACTTGGAACTCTCGTGTTCTCTGCAATGGCCGCTGAGAACAAACCCTCCACCGCCGGCAAGAAACGGAAGCAGCGCTATCGTCCCAACAATGTTTTCTCCCAATCTTTTCTTCTTCTTCTTCTTACCTTCTCTATTCTATTGTCGATTTACTCAATTCCTTCTAATTTTCTCGTTGTTCTCCTTCCTCAGAAACCAGTGAAGAAGAAGGGCCATTACCCGTTACGCCCTGGAGTCCAAGGTTTCTTTATCACCTGCGATGGCGGCCGAGAGCGTCAAGCCTCCATTGAAGCTATCAATGTTATCGACTCTGTATGACTTTGCCCCTTTTTCACTGCTTCTGGGTTATGTTTTGTTGGGATTGAGATGAATATTTCTATGTATTACGTTTTGATTGTCATTGAACTGTGTTCCTATTGCCTTATTGTGGAAGTCATGGGGGAATTGAATCATTCCTTTTGTTTTGTTATAAATTTCCGAGATGAAACTTAGAGAGATTTGGAGGCAGATAATGTAAAGCGCGTTACCCAATGATTCAAAGATGTTTGATGTGCGAAGGGTCTATTTGTAAAGCTTATTAGTGAGTAATGAATACTAATCCAAAGTTATCTATGATAGACGTAAAGGGAAAATATTACGAAGGAAATTTTTTAAGCTTATCTCAAAGTAATTCTGGTTTTTGTCAATGTTATGTCTAATTGTTCGTTGTAGGATTATTAATTGTTCCTTCTTGAGATGCTATACATATATGTTTGTTCTGTTTAAAGGCTTTACTGTTGATTTCTTTACAAGAACATTGATTTTTACGTATTCGTTTTCTAATATTCCATTTTCAGTTTTTTGACGAGTTCGTCCATGGAAAGGGTTCTGGCGTGAAGCTGACAGAATTAGCTGATAAACCTTTAAACAAAAAAATTAAGTTTTCAGATTCTGAATCTTCTGGTTCTGATGATGATGATGATGGGGAAGAGGAGGAGGAGGAGGTGGGGGATGAGAACGAGGACGAGAACAAGGAGGTTCCCGAGGAAGAAAGCAAGTCTAAGTCTCCTAAGGAGCAAAATGATCCTTGCAATGAAAACAAAACAACGGATGTTCCAGATACTCATCAAGGGGACATTGTAGCCACCGAAAGTCGAACGGAGGAAAAATCAAATGACAATGAAAAGGATATAAAGTGTCCAGAAGTTCCATCGGAGGAAGTTGAGGAGCCACCGAAAAAGAAACACTGCATTGAAGCAGATGCATCAAAAAGTATTGTTAAGGAGAAGGAGAAATCCATTGATCAATTGATTGAAGCTGAACTTCAGGAACTGGGAGATAAAAGCAAGGTCAGTGATAAAATTTCAACGTTAAGGTTATTCTTTTTCTGATCTTACAACTATTAACTTTGTATGAGTTATGATTATGACTTACAAGCTATTTTAAACATCCAGACTGATAATTGATCCTTTGTTTTCCAATCTTCTTATCATGAAATGTGGTTTAGAGACGTTTTTTCAACCTTGATTCGGGGTGCAATGGTGTTGTCTTTATCCAAATGCGGAAGAACGATGGAGAACCTGGTCCTGAGGCTGTTGTGCAGCATATGATGACATCTATTGCTTCAACAAGGAAACACATATCGAGGTTTGCATATAGTTCTTGAATTTCTATAAGGAATGAAGCATGAAGAAGTTCATATACTGGATCACTAAAAGGCTTTATTGTATATTTGATATATCCCAGGTTCATACTTAGAGTACTGCCTGTTGAAGTGGCATGCTATGCTTCAGTGGAGGAGATCTCCAGGGCAATAAAGCCTCTAATAGAAAAGAACTTTCCTGTTGAAAGTCAGAGTCCTAAAAAGGTATATCCCTACTTTTACGTTCCCTTTTAATCGTCTCCCAATTTCAATACCATGGTGTCAGTTCCTTTGTGATAAAGGAACAACTATAGATTCAATGACTATTTGAATACGATCACTTGACGCTACTATGAGTTGGAAATAGTTGCGCTGATTTCTTGATGGCTTTATGCATTCTAAGATTGAGGACAATTGTTTCAAATTTTGTTTCTAGATTTGTGCTTGGTTTTGTGACTGGAGTTCTAGGCCACATATCCAATTCACTTAAGACTTGGAGAGCTAAAGGCGTCATTGAGTGAAAAGTAGAGTAGGTTGTATATACTTGTAACTGTTTAAAGCTGTTGTGATGTAGTTGTCAACCGGGTAGAAAATAAGGAGAGTCCATGGCTATTCATCTTATAATGGCTGTGGTTTTCTAGTTTTTGCAGTTTCGATATCTCTGACCCTACACGTTTTGACACTTCCTAGTTGCATGATGAAATTGCAACCTCCAGTTGGTAAAGGACATGGAAGAAAATTCAACTAAGTGACTATAATCGATGATTAATTGATTTATAAAAGAAACTATCCTATAAATACTTTACATGAAGCGAACATGAATCTCGTTTTCTAGTGACTTGACGTGAGGATGCTATTATTAGAATGATCACAAATTAACATTTCAATTTTTTTTTATCTTTCTCGCAGTTTGCAGTATTATACGAGGCCCGTTCAAATACTGGCATTGACAGGGCAACTATAATTAATACTGTAGCAAAAGCTGTTCCCGAGCCTCATAAAGTTGATTTGAACAATCCTGAAAAAACCATTGTGGTTGAGATTGTCAAGGTGAGGAACTCTGTTCTTGGAAGTAAATAGTTTAGAGATTTCTCCTTAGACCTGATTCAGTATATAGAATGTTTGCCATAGCCACCCACTTGGTGGGGTATGTGCCGCTTTAAATTGTGTTTAAAATATTCTCTGCTAGCTGAAGCTATATGCATCTTAAACCTTGCTTTGAGGATTTAATCTAATTTTGGTTTCAAACTTGACTTCTTTTACCGAATTTTGATTGTTTTAGATACATATACTGCTTGAGGTTAAATCTGCTGGGAAGTAACTGAAGTTCATACTTTTATTATCCTTACCCAAGTAGGGTAAATGGAAAGTGTTGTAGACCTCTCAAAGCCCTTGCAGAACTAGTTTTATCTGCAAGTTAGTCTGGGAGGCAAAAACTATGGCTTTAGAACTTGAAGAGTTGGCTGAACCATTGGTTTGGAACGTGTTTGGTGAGACTGGATGCTAATAGAATAGGTTGTGTAACAGCCTGAGCCCGAGCCCTCTGCTAGTAGATATTGTCCTCTTTGGGCTTTCTCTTTCGGACTTCCCCTCAAGGTTTTTAAAATGCGTTTACTAGGGAGAGGTGAATGTTTCATTCTCCTCCCCCACCGATGTGGAATCTCACAGGCTGCCTCGGATGGAAGTTGACAACCCAAAATAATGTTTGATGATTGATGACGATATGTGTTGTTTGTTATGAAATGTGATTGGTCTGGAATGTGGACAATAACTGTGTAATCTTACATTGTGTTTTTTGTTGGGTTGTTCAGACAATTTGCTTGATTGGAGTAGTGGAGAAGTACAAGGAGTTATCCAAGTACAACCTAAGGCAGCTGACATCAAGAAAGCAATAGAAATAGGTTAGGTTAAGTTATTTGGTTTTCATGTCTGTTTCAGCTTTGGTCGGACGGACACCTTTTAACTCTGAAATGTATTAATCTGCATGTTTCTTGATGTGTAGGGTTAGTTTAGTTTAGCTTTATGGTTTTAAATTTCATAATATGCTTCTACTGTTCTGTTGAACTACTATTGAGTTTGATGGAGGAAGATGATTGAAAGATTCATCATATCTCTTGTTTGTTTCTATGGCTTGCATTTACATGGAGTTAAATATTTTTTTAAATCAATGACTCGAACTCGAAAGATAATGCATGAGTATCCAACACAATGTATTAGATGATATATGGTAT

mRNA sequence

ACAACTTGGAACTCTCGTGTTCTCTGCAATGGCCGCTGAGAACAAACCCTCCACCGCCGGCAAGAAACGGAAGCAGCGCTATCGTCCCAACAATAAACCAGTGAAGAAGAAGGGCCATTACCCGTTACGCCCTGGAGTCCAAGGTTTCTTTATCACCTGCGATGGCGGCCGAGAGCGTCAAGCCTCCATTGAAGCTATCAATGTTATCGACTCTTTTTTTGACGAGTTCGTCCATGGAAAGGGTTCTGGCGTGAAGCTGACAGAATTAGCTGATAAACCTTTAAACAAAAAAATTAAGTTTTCAGATTCTGAATCTTCTGGTTCTGATGATGATGATGATGGGGAAGAGGAGGAGGAGGAGGTGGGGGATGAGAACGAGGACGAGAACAAGGAGGTTCCCGAGGAAGAAAGCAAGTCTAAGTCTCCTAAGGAGCAAAATGATCCTTGCAATGAAAACAAAACAACGGATGTTCCAGATACTCATCAAGGGGACATTGTAGCCACCGAAAGTCGAACGGAGGAAAAATCAAATGACAATGAAAAGGATATAAAGTGTCCAGAAGTTCCATCGGAGGAAGTTGAGGAGCCACCGAAAAAGAAACACTGCATTGAAGCAGATGCATCAAAAAGTATTGTTAAGGAGAAGGAGAAATCCATTGATCAATTGATTGAAGCTGAACTTCAGGAACTGGGAGATAAAAGCAAGAGACGTTTTTTCAACCTTGATTCGGGGTGCAATGGTGTTGTCTTTATCCAAATGCGGAAGAACGATGGAGAACCTGGTCCTGAGGCTGTTGTGCAGCATATGATGACATCTATTGCTTCAACAAGGAAACACATATCGAGGTTCATACTTAGAGTACTGCCTGTTGAAGTGGCATGCTATGCTTCAGTGGAGGAGATCTCCAGGGCAATAAAGCCTCTAATAGAAAAGAACTTTCCTGTTGAAAGTCAGAGTCCTAAAAAGTTTGCAGTATTATACGAGGCCCGTTCAAATACTGGCATTGACAGGGCAACTATAATTAATACTGTAGCAAAAGCTGTTCCCGAGCCTCATAAAGTTGATTTGAACAATCCTGAAAAAACCATTGTGGTTGAGATTGTCAAGACAATTTGCTTGATTGGAGTAGTGGAGAAGTACAAGGAGTTATCCAAGTACAACCTAAGGCAGCTGACATCAAGAAAGCAATAGAAATAGGTTAGGTTAAGTTATTTGGTTTTCATGTCTGTTTCAGCTTTGGTCGGACGGACACCTTTTAACTCTGAAATGTATTAATCTGCATGTTTCTTGATGTGTAGGGTTAGTTTAGTTTAGCTTTATGGTTTTAAATTTCATAATATGCTTCTACTGTTCTGTTGAACTACTATTGAGTTTGATGGAGGAAGATGATTGAAAGATTCATCATATCTCTTGTTTGTTTCTATGGCTTGCATTTACATGGAGTTAAATATTTTTTTAAATCAATGACTCGAACTCGAAAGATAATGCATGAGTATCCAACACAATGTATTAGATGATATATGGTAT

Coding sequence (CDS)

ATGGCCGCTGAGAACAAACCCTCCACCGCCGGCAAGAAACGGAAGCAGCGCTATCGTCCCAACAATAAACCAGTGAAGAAGAAGGGCCATTACCCGTTACGCCCTGGAGTCCAAGGTTTCTTTATCACCTGCGATGGCGGCCGAGAGCGTCAAGCCTCCATTGAAGCTATCAATGTTATCGACTCTTTTTTTGACGAGTTCGTCCATGGAAAGGGTTCTGGCGTGAAGCTGACAGAATTAGCTGATAAACCTTTAAACAAAAAAATTAAGTTTTCAGATTCTGAATCTTCTGGTTCTGATGATGATGATGATGGGGAAGAGGAGGAGGAGGAGGTGGGGGATGAGAACGAGGACGAGAACAAGGAGGTTCCCGAGGAAGAAAGCAAGTCTAAGTCTCCTAAGGAGCAAAATGATCCTTGCAATGAAAACAAAACAACGGATGTTCCAGATACTCATCAAGGGGACATTGTAGCCACCGAAAGTCGAACGGAGGAAAAATCAAATGACAATGAAAAGGATATAAAGTGTCCAGAAGTTCCATCGGAGGAAGTTGAGGAGCCACCGAAAAAGAAACACTGCATTGAAGCAGATGCATCAAAAAGTATTGTTAAGGAGAAGGAGAAATCCATTGATCAATTGATTGAAGCTGAACTTCAGGAACTGGGAGATAAAAGCAAGAGACGTTTTTTCAACCTTGATTCGGGGTGCAATGGTGTTGTCTTTATCCAAATGCGGAAGAACGATGGAGAACCTGGTCCTGAGGCTGTTGTGCAGCATATGATGACATCTATTGCTTCAACAAGGAAACACATATCGAGGTTCATACTTAGAGTACTGCCTGTTGAAGTGGCATGCTATGCTTCAGTGGAGGAGATCTCCAGGGCAATAAAGCCTCTAATAGAAAAGAACTTTCCTGTTGAAAGTCAGAGTCCTAAAAAGTTTGCAGTATTATACGAGGCCCGTTCAAATACTGGCATTGACAGGGCAACTATAATTAATACTGTAGCAAAAGCTGTTCCCGAGCCTCATAAAGTTGATTTGAACAATCCTGAAAAAACCATTGTGGTTGAGATTGTCAAGACAATTTGCTTGATTGGAGTAGTGGAGAAGTACAAGGAGTTATCCAAGTACAACCTAAGGCAGCTGACATCAAGAAAGCAATAG

Protein sequence

MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVIDSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDENKEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQLTSRKQ

Homology

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BLAST of Carg25439 vs. NCBI nr
Match: XP_023531982.1 (THUMP domain-containing protein 1 homolog [Cucurbita pepo subsp. pepo] >KAG7022095.1 THUMP domain-containing protein 1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 730.3 bits (1884), Expect = 8.5e-207
Identity = 387/387 (100.00%), Postives = 387/387 (100.00%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN
Sbjct: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP
Sbjct: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 387

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BLAST of Carg25439 vs. NCBI nr
Match: KAG6588199.1 (THUMP domain-containing protein 1-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 718.0 bits (1852), Expect = 4.4e-203
Identity = 380/387 (98.19%), Postives = 384/387 (99.22%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFFDE VHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDEN+DEN
Sbjct: 61  DSFFDELVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENKDEN 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           KEVP+EESKSKSPKEQNDPCNEN+TTDVPD HQGD VATESRTEEKSNDNEKDIKCPEVP
Sbjct: 121 KEVPDEESKSKSPKEQNDPCNENETTDVPDPHQGDTVATESRTEEKSNDNEKDIKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQH+MTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHIMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 387

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BLAST of Carg25439 vs. NCBI nr
Match: XP_022930547.1 (THUMP domain-containing protein 1 homolog [Cucurbita moschata])

HSP 1 Score: 715.7 bits (1846), Expect = 2.2e-202
Identity = 380/387 (98.19%), Postives = 382/387 (98.71%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFFDE VHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDD DGEEEEEEVG ENEDEN
Sbjct: 61  DSFFDELVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDGDGEEEEEEVGGENEDEN 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           KEVP+EESKSKSPKEQNDPCNEN+TTDVPD HQGD VATESRTEEKSNDNEKDIKCPEVP
Sbjct: 121 KEVPDEESKSKSPKEQNDPCNENETTDVPDPHQGDTVATESRTEEKSNDNEKDIKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 387

[Close]

BLAST of Carg25439 vs. NCBI nr
Match: XP_022967605.1 (THUMP domain-containing protein 1 homolog [Cucurbita maxima])

HSP 1 Score: 711.4 bits (1835), Expect = 4.1e-201
Identity = 380/387 (98.19%), Postives = 382/387 (98.71%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFFDE VHGKGSGVKLTELADKPLNKKIKFSDSESSGS DDDDGEEEEEEVGDENEDEN
Sbjct: 61  DSFFDELVHGKGSGVKLTELADKPLNKKIKFSDSESSGS-DDDDGEEEEEEVGDENEDEN 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           KEVP+EESKSKSPKEQNDPCNEN+TTDVPD HQGD VATESRTEEKSNDNEKDIKCPEV 
Sbjct: 121 KEVPDEESKSKSPKEQNDPCNENETTDVPDPHQGDTVATESRTEEKSNDNEKDIKCPEVR 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 386

[Close]

BLAST of Carg25439 vs. NCBI nr
Match: KAG7022121.1 (THUMP domain-containing protein 1-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 691.0 bits (1782), Expect = 5.7e-195
Identity = 380/440 (86.36%), Postives = 382/440 (86.82%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DS-----------------------------------------------------FFDEF 120
           DS                                                     FFDE 
Sbjct: 61  DSYDFAPFYCFWVMIINCSFFKCYTYMFVLFKGFTVDFFTRTLIFTYSFSLFHFQFFDEL 120

Query: 121 VHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDENKEVPEEE 180
           VHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDD DGEEEEEEVG ENEDENKEVP+EE
Sbjct: 121 VHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDGDGEEEEEEVGGENEDENKEVPDEE 180

Query: 181 SKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVPSEEVEEP 240
           SKSKSPKEQNDPCNEN+TTDVPD HQGD VATESRTEEKSNDNEKDIKCPEVPSEEVEEP
Sbjct: 181 SKSKSPKEQNDPCNENETTDVPDPHQGDTVATESRTEEKSNDNEKDIKCPEVPSEEVEEP 240

Query: 241 PKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVVFIQMRKN 300
           PKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVVFIQMRKN
Sbjct: 241 PKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVVFIQMRKN 300

Query: 301 DGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVE 360
           DGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVE
Sbjct: 301 DGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVE 360

Query: 361 SQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICLIGV 388
           SQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICLIGV
Sbjct: 361 SQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICLIGV 420

[Close]

BLAST of Carg25439 vs. ExPASy Swiss-Prot
Match: Q9VZD8 (THUMP domain-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=CG15014 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 3.1e-18
Identity = 77/255 (30.20%), Postives = 129/255 (50.59%), Query Frame = 0


Query: 140 CNENKTTDVPD-----THQGDIVATESRTEEKSNDNEKDIKCPE--VPSEEVEEPPKKKH 199
           CN N+   V +      H  DI+    + E     NE + K PE     +  E+ PK   
Sbjct: 42  CNINEKACVRECYNLLNHYADILYGSEKPE-----NEPEKKQPEEGAGGDAGEDDPKPAA 101

Query: 200 CIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVVFIQMRKNDGEPG 259
              +D    +         +   A+ +E+  + K RF N+D+     VFI+ +  D    
Sbjct: 102 GGTSDDDDDL---------EAAAAKCREMLSQRKMRFQNVDTNTTNCVFIRTQLED---- 161

Query: 260 PEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVESQSPK 319
           P A+ +H++  IA+T K +SRF+LR++P+EV C A++ +I  A   L +K+F  E   P 
Sbjct: 162 PVALGKHIINDIATTGKSMSRFVLRLVPIEVVCRANMPDIITAAGELFDKHFLKE---PT 221

Query: 320 KFAVLYEARSNTGIDRATIINTVAKAVPEP---HKVDLNNPEKTIVVEIVKTICLIGVVE 379
            + +++  R N  I R  II  +A+ V      +KVDL   +K+I+VE+++  CL+ V++
Sbjct: 222 SYGIIFNHRYNQQIKRDQIITQLAELVNSKNVGNKVDLKEAKKSIIVEVLRGWCLLSVID 275

Query: 380 KYKELSKYNLRQLTS 385
            Y E  K+NL +L +
Sbjct: 282 NYLECKKFNLAELAN 275

[Close]

BLAST of Carg25439 vs. ExPASy Swiss-Prot
Match: Q24K03 (THUMP domain-containing protein 1 OS=Bos taurus OX=9913 GN=THUMPD1 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.1e-18
Identity = 71/223 (31.84%), Postives = 119/223 (53.36%), Query Frame = 0


Query: 170 NEKDIKCPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAEL-QELGD----- 229
           N  + KC E     + E     +  E  A K       +  D  +EA L +E+GD     
Sbjct: 51  NMNERKCVEEAYSLLNEYGDDMYGPEKFADKDQQPSGSEGEDDDVEAALKKEVGDIKAST 110

Query: 230 -KSKRRFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVE 289
               RRF +++SG N VVFI+    +    PE +V H++  I  T+K  +R ILR+LP+ 
Sbjct: 111 EMRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDIYKTKKKKTRVILRMLPIS 170

Query: 290 VACYASVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAV--- 349
             C A +E++ +  +  +E  F   ++    F ++Y++R+N+ ++R  +I  +A  V   
Sbjct: 171 GTCKAFLEDMKKYAETFLEPWFKAPNKG--TFQIVYKSRNNSHMNREEVIKELAGIVGSL 230

Query: 350 PEPHKVDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQL 383
              +KVDL+NP+ T+VVEI+K +C + VV+ Y    KYNL+++
Sbjct: 231 NSENKVDLSNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEV 267

[Close]

BLAST of Carg25439 vs. ExPASy Swiss-Prot
Match: Q9NXG2 (THUMP domain-containing protein 1 OS=Homo sapiens OX=9606 GN=THUMPD1 PE=1 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-17
Identity = 66/218 (30.28%), Postives = 121/218 (55.50%), Query Frame = 0


Query: 168 NDNEKDIKCPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKR 227
           N+   D+  PE  +++ ++P   +   E D +++ +K++   I    E  L        R
Sbjct: 66  NEYGDDMYGPEKFTDKDQQPSGSEG--EDDDAEAALKKEVGDIKASTEMRL--------R 125

Query: 228 RFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYA 287
           RF +++SG N VVFI+    +    PE +V H++  +  T+K  +R ILR+LP+   C A
Sbjct: 126 RFQSVESGANNVVFIRTLGIE----PEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKA 185

Query: 288 SVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAV---PEPHK 347
            +E++ +  +  +E  F   ++    F ++Y++R+N+ ++R  +I  +A  V      +K
Sbjct: 186 FLEDMKKYAETFLEPWFKAPNKG--TFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENK 245

Query: 348 VDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQL 383
           VDL NP+ T+VVEI+K +C + VV+ Y    KYNL+++
Sbjct: 246 VDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEV 267

[Close]

BLAST of Carg25439 vs. ExPASy Swiss-Prot
Match: Q99J36 (THUMP domain-containing protein 1 OS=Mus musculus OX=10090 GN=Thumpd1 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.5e-17
Identity = 71/223 (31.84%), Postives = 117/223 (52.47%), Query Frame = 0


Query: 170 NEKDIKCPEVPSEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAEL-QELGD----- 229
           N  + KC E     + E     +  E    K       +  D   EA L +E+GD     
Sbjct: 51  NMNERKCVEEAYSLLNEYGDDMYGPEKFIDKDQQPSGSEGEDDDAEAALKKEVGDIKAST 110

Query: 230 -KSKRRFFNLDSGCNGVVFIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVE 289
            K  RRF +++SG N VVFI+    +    PE +V H++  +  T+K  +R ILR+LP+ 
Sbjct: 111 EKRLRRFQSVESGANNVVFIRTLGIE----PEKLVHHILQDMYKTKKKKTRVILRMLPIS 170

Query: 290 VACYASVEEISRAIKPLIEKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAV--- 349
             C A +E++ +  +  +E  F   ++    F ++Y++R+N+ ++R  +I  +A  V   
Sbjct: 171 GTCKAFLEDMKKYAETFLEPWFKAPNKG--TFQIVYKSRNNSHMNREEVIKELAGIVGSL 230

Query: 350 PEPHKVDLNNPEKTIVVEIVKTICLIGVVEKYKELSKYNLRQL 383
              +KVDL NPE T+VVEI+K +C + VV+ Y    KYNL+++
Sbjct: 231 NSENKVDLTNPEYTVVVEIIKAVCCLSVVKDYVLFRKYNLQEV 267

[Close]

BLAST of Carg25439 vs. ExPASy Swiss-Prot
Match: P87151 (Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPBC25H2.10c PE=4 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 6.3e-11
Identity = 51/191 (26.70%), Postives = 96/191 (50.26%), Query Frame = 0


Query: 195 EADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFN---LDSGCNGVVFIQMRKNDGEP 254
           E  +S    +E+ + ++  +  E+  L  K+K+       LD  C  V F++ R     P
Sbjct: 69  ETQSSDQENEEEGEELEDAVAKEINSLQKKNKKELLTPIMLDMPC--VYFVKTR-----P 128

Query: 255 GPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNFPVESQSP 314
             + V     T      K ++R+  R++P+      S++++    K LI+  F    +  
Sbjct: 129 PIDPVRLVEFTCEVGKTKKMTRYTQRLIPIVRTTGVSLDDLEELAKSLIDPLFHEGQEGI 188

Query: 315 KKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICLIGVVEKY 374
           K+FAV    R++T + +  I  TVA+ V + H VDL N +  I+V+++K I  I +V+ +
Sbjct: 189 KEFAVQANIRNHTVLKKDDIYRTVARIVGKQHMVDLKNFKLLILVQVIKNIIGISIVQNF 248

Query: 375 KELSKYNLRQL 383
           +EL ++NL ++
Sbjct: 249 EELRRFNLNEV 252

[Close]

BLAST of Carg25439 vs. ExPASy TrEMBL
Match: A0A6J1EQU7 (THUMP domain-containing protein 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC111436964 PE=4 SV=1)

HSP 1 Score: 715.7 bits (1846), Expect = 1.1e-202
Identity = 380/387 (98.19%), Postives = 382/387 (98.71%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFFDE VHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDD DGEEEEEEVG ENEDEN
Sbjct: 61  DSFFDELVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDGDGEEEEEEVGGENEDEN 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           KEVP+EESKSKSPKEQNDPCNEN+TTDVPD HQGD VATESRTEEKSNDNEKDIKCPEVP
Sbjct: 121 KEVPDEESKSKSPKEQNDPCNENETTDVPDPHQGDTVATESRTEEKSNDNEKDIKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 387

[Close]

BLAST of Carg25439 vs. ExPASy TrEMBL
Match: A0A6J1HUY9 (THUMP domain-containing protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC111467052 PE=4 SV=1)

HSP 1 Score: 711.4 bits (1835), Expect = 2.0e-201
Identity = 380/387 (98.19%), Postives = 382/387 (98.71%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFFDE VHGKGSGVKLTELADKPLNKKIKFSDSESSGS DDDDGEEEEEEVGDENEDEN
Sbjct: 61  DSFFDELVHGKGSGVKLTELADKPLNKKIKFSDSESSGS-DDDDGEEEEEEVGDENEDEN 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           KEVP+EESKSKSPKEQNDPCNEN+TTDVPD HQGD VATESRTEEKSNDNEKDIKCPEV 
Sbjct: 121 KEVPDEESKSKSPKEQNDPCNENETTDVPDPHQGDTVATESRTEEKSNDNEKDIKCPEVR 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKELSKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 386

[Close]

BLAST of Carg25439 vs. ExPASy TrEMBL
Match: A0A1S3BP64 (LOW QUALITY PROTEIN: THUMP domain-containing protein 1 homolog OS=Cucumis melo OX=3656 GN=LOC103492015 PE=4 SV=1)

HSP 1 Score: 622.1 bits (1603), Expect = 1.6e-174
Identity = 334/387 (86.30%), Postives = 360/387 (93.02%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAA+NKPS  GKKRKQR+ P+NKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAADNKPSAGGKKRKQRFLPHNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFFDE  HGK  GVKLTELADKPLNKKIKFSDSESS SDDDD+ EEEEEE GD  +DEN
Sbjct: 61  DSFFDELAHGKNCGVKLTELADKPLNKKIKFSDSESSSSDDDDN-EEEEEEKGD--DDEN 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           K+VPEE   SKSPKEQN+P NEN+TTDV + +Q + VA +++ EEKSNDNE+D+KCPEVP
Sbjct: 121 KKVPEE--GSKSPKEQNEPSNENETTDVVNPNQEETVALKNQKEEKSNDNERDMKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPP KKHC+EADASKS +KEKEKSIDQLIEAELQELGDK+KRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPNKKHCVEADASKSNIKEKEKSIDQLIEAELQELGDKTKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGP+AVVQHMMTSIASTRKHISRFILR+LP+EVACYASVEEI+RAIKPLI
Sbjct: 241 FIQMRKNDGEPGPKAVVQHMMTSIASTRKHISRFILRILPIEVACYASVEEITRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFP+ESQ+  KFAVLYEAR+NTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPIESQNAVKFAVLYEARANTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVEKYKE SKYNLRQLTSRKQ
Sbjct: 361 TICLIGVVEKYKEFSKYNLRQLTSRKQ 382

[Close]

BLAST of Carg25439 vs. ExPASy TrEMBL
Match: A0A6J1DK01 (THUMP domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111021610 PE=4 SV=1)

HSP 1 Score: 596.3 bits (1536), Expect = 9.3e-167
Identity = 320/387 (82.69%), Postives = 346/387 (89.41%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAAENKPST  KKRKQRY P+NKPVKKKGHYPL PGVQGFF+TCDGGRERQASIEAINVI
Sbjct: 1   MAAENKPSTGAKKRKQRYLPHNKPVKKKGHYPLHPGVQGFFLTCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFF+E VHGK SGVKL++LADKPLNKKIKFSDSESS SDDD++         DE ++E 
Sbjct: 61  DSFFEELVHGKVSGVKLSQLADKPLNKKIKFSDSESSSSDDDNE---------DEGDEEE 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           +EVPEEE KSKS  EQNDP NEN+TT+  D HQGD V TE++TEEKSNDN  D+KC EV 
Sbjct: 121 EEVPEEEGKSKSHTEQNDPSNENETTEKVDPHQGDAVVTENQTEEKSNDN-SDVKCHEVL 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           S EVEEPP KKHCIEAD SK++V+EK KSIDQLIEAEL+ELGDK+KRR FNLDSGCNGVV
Sbjct: 181 SNEVEEPPSKKHCIEADTSKNVVQEKAKSIDQLIEAELEELGDKNKRRLFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRK DGEPGPE VV+HMMTSIASTRKHISRFILRVLP+EVACYASVEEISRAIKPLI
Sbjct: 241 FIQMRKGDGEPGPEDVVKHMMTSIASTRKHISRFILRVLPIEVACYASVEEISRAIKPLI 300

Query: 301 EKNFPVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVK 360
           EKNFPVES+SP KFAVLYEAR+N+GIDRATIINTVAK VPEPHKVDLNNPEKTIVVEIVK
Sbjct: 301 EKNFPVESESPVKFAVLYEARANSGIDRATIINTVAKCVPEPHKVDLNNPEKTIVVEIVK 360

Query: 361 TICLIGVVEKYKELSKYNLRQLTSRKQ 388
           TICLIGVVE+YKELSKYNLRQLTS KQ
Sbjct: 361 TICLIGVVERYKELSKYNLRQLTSGKQ 377

[Close]

BLAST of Carg25439 vs. ExPASy TrEMBL
Match: A0A5A7U5T9 (THUMP domain-containing protein 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1250G00540 PE=4 SV=1)

HSP 1 Score: 487.3 bits (1253), Expect = 6.1e-134
Identity = 263/313 (84.03%), Postives = 287/313 (91.69%), Query Frame = 0


Query: 1   MAAENKPSTAGKKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60
           MAA+NKPS  GKKRKQR+ P+NKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI
Sbjct: 1   MAADNKPSAGGKKRKQRFLPHNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVI 60

Query: 61  DSFFDEFVHGKGSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGEEEEEEVGDENEDEN 120
           DSFFDE  HGK  GVKLTELADKPLNKKIKFSDSESS SDDDD+ EEEEEE GD  +DEN
Sbjct: 61  DSFFDELAHGKNCGVKLTELADKPLNKKIKFSDSESSSSDDDDN-EEEEEEKGD--DDEN 120

Query: 121 KEVPEEESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVP 180
           K+VPEE   SKSPKEQN+P NEN+TTDV + +Q + VA E++ EEKSNDNE+D+KCPEVP
Sbjct: 121 KKVPEE--GSKSPKEQNEPSNENETTDVVNPNQEETVAPENQKEEKSNDNERDMKCPEVP 180

Query: 181 SEEVEEPPKKKHCIEADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVV 240
           SEEVEEPP KKHC+EADASKS +KEKEKSIDQLIEAELQELGDK+KRRFFNLDSGCNGVV
Sbjct: 181 SEEVEEPPNKKHCVEADASKSNIKEKEKSIDQLIEAELQELGDKTKRRFFNLDSGCNGVV 240

Query: 241 FIQMRKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLI 300
           FIQMRKNDGEPGP+AVVQHMMTSIASTRKHISRFILR+LP+EVACYASVEEI+RAIKPLI
Sbjct: 241 FIQMRKNDGEPGPKAVVQHMMTSIASTRKHISRFILRILPIEVACYASVEEITRAIKPLI 300

Query: 301 EKNFPVESQSPKK 314
           EKNFP+ESQ+  K
Sbjct: 301 EKNFPIESQNAVK 308

[Close]

BLAST of Carg25439 vs. TAIR 10
Match: AT5G12410.1 (THUMP domain-containing protein )

HSP 1 Score: 377.9 bits (969), Expect = 1.0e-104
Identity = 220/380 (57.89%), Postives = 274/380 (72.11%), Query Frame = 0


Query: 12  KKRKQRYRPNNKPVKKKGHYPLRPGVQGFFITCDGGRERQASIEAINVIDSFFDEFVHGK 71
           KKRKQ YRP N+PVKKKG YPL+PGVQGFFI+CDGGRE QA+ EAINVIDSFF+E + G 
Sbjct: 8   KKRKQHYRPQNRPVKKKGSYPLKPGVQGFFISCDGGREFQAAQEAINVIDSFFEELIQGT 67

Query: 72  GSGVKLTELADKPLNKKIKFSDSESSGSDDDDDGE-EEEEEVGD-----ENEDENKEVPE 131
            S V    L   P+NKK+ FS SE    ++D+    EEEE  GD      +E  N  V E
Sbjct: 68  DSKVN-PGLFGNPINKKVTFSYSEDEDEEEDESNNGEEEENKGDGDKAVVSEGGNDLVNE 127

Query: 132 EESKSKSPKEQNDPCNENKTTDVPDTHQGDIVATESRTEEKSNDNEKDIKCPEVPSEEVE 191
           +E  S+     ND  NE +           +   E+  EE+   N+K+           +
Sbjct: 128 KEIASEG---VNDQVNEKEIASEGSCEVKQLAENETVKEEEDKGNQKN---------GGD 187

Query: 192 EPPKKKHCI-EADASKSIVKEKEKSIDQLIEAELQELGDKSKRRFFNLDSGCNGVVFIQM 251
           EPP+KK C  EA+    + +  EKSID+LIEAEL+ELGDKSKRRF  LD GCNG+VFIQM
Sbjct: 188 EPPRKKTCTEEANPLAKVNENAEKSIDKLIEAELKELGDKSKRRFMKLDPGCNGLVFIQM 247

Query: 252 RKNDGEPGPEAVVQHMMTSIASTRKHISRFILRVLPVEVACYASVEEISRAIKPLIEKNF 311
           +K DG+P P+ +VQH MTS A+T+KH+SRFILR+LP+EV+CY S EEISRAIKPL+E+ F
Sbjct: 248 KKRDGDPSPKEIVQHAMTSAAATKKHMSRFILRLLPIEVSCYPSEEEISRAIKPLVEQYF 307

Query: 312 PVESQSPKKFAVLYEARSNTGIDRATIINTVAKAVPEPHKVDLNNPEKTIVVEIVKTICL 371
           P+E+++P+KFAVLY AR+NTG+DR  IINT+AK++P PHKVDL+NPE TIVVEI+KT+CL
Sbjct: 308 PIETENPRKFAVLYGARANTGLDRMKIINTIAKSIPAPHKVDLSNPEMTIVVEIIKTVCL 367

Query: 372 IGVVEKYKELSKYNLRQLTS 385
           IGVVEKYKEL+KYNLRQLTS
Sbjct: 368 IGVVEKYKELAKYNLRQLTS 374

The following BLAST results are available for this feature:

BLAST of Carg25439 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023531982.1	8.5e-207	100.00	THUMP domain-containing protein 1 homolog [Cucurbita pepo subsp. pepo] >KAG70220...	[more]
KAG6588199.1	4.4e-203	98.19	THUMP domain-containing protein 1-like protein, partial [Cucurbita argyrosperma ...	[more]
XP_022930547.1	2.2e-202	98.19	THUMP domain-containing protein 1 homolog [Cucurbita moschata]	[more]
XP_022967605.1	4.1e-201	98.19	THUMP domain-containing protein 1 homolog [Cucurbita maxima]	[more]
KAG7022121.1	5.7e-195	86.36	THUMP domain-containing protein 1-like protein [Cucurbita argyrosperma subsp. ar...	[more]

BLAST of Carg25439 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9VZD8	3.1e-18	30.20	THUMP domain-containing protein 1 homolog OS=Drosophila melanogaster OX=7227 GN=...	[more]
Q24K03	4.1e-18	31.84	THUMP domain-containing protein 1 OS=Bos taurus OX=9913 GN=THUMPD1 PE=2 SV=1	[more]
Q9NXG2	1.5e-17	30.28	THUMP domain-containing protein 1 OS=Homo sapiens OX=9606 GN=THUMPD1 PE=1 SV=2	[more]
Q99J36	1.5e-17	31.84	THUMP domain-containing protein 1 OS=Mus musculus OX=10090 GN=Thumpd1 PE=1 SV=1	[more]
P87151	6.3e-11	26.70	Uncharacterized protein C25H2.10c OS=Schizosaccharomyces pombe (strain 972 / ATC...	[more]

BLAST of Carg25439 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EQU7	1.1e-202	98.19	THUMP domain-containing protein 1 homolog OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1HUY9	2.0e-201	98.19	THUMP domain-containing protein 1 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A1S3BP64	1.6e-174	86.30	LOW QUALITY PROTEIN: THUMP domain-containing protein 1 homolog OS=Cucumis melo O...	[more]
A0A6J1DK01	9.3e-167	82.69	THUMP domain-containing protein 1 OS=Momordica charantia OX=3673 GN=LOC111021610...	[more]
A0A5A7U5T9	6.1e-134	84.03	THUMP domain-containing protein 1-like protein OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Carg25439 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G12410.1	1.0e-104	57.89	THUMP domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004114	THUMP domain	SMART	SM00981	THUMP_a_2	coord: 277..369 e-value: 4.4E-9 score: 46.2
IPR004114	THUMP domain	PFAM	PF02926	THUMP	coord: 268..368 e-value: 4.3E-16 score: 59.3
IPR004114	THUMP domain	PROSITE	PS51165	THUMP	coord: 263..369 score: 21.40884
None	No IPR available	GENE3D	3.30.2300.10	THUMP superfamily	coord: 286..369 e-value: 1.5E-25 score: 91.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 123..141
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..191
None	No IPR available	PANTHER	PTHR13452:SF10	THUMP DOMAIN-CONTAINING PROTEIN 1	coord: 1..385
None	No IPR available	SUPERFAMILY	143437	THUMP domain-like	coord: 287..368
IPR040183	THUMP domain-containing protein 1-like	PANTHER	PTHR13452	THUMP DOMAIN CONTAINING PROTEIN 1-RELATED	coord: 1..385
IPR040183	THUMP domain-containing protein 1-like	CDD	cd11717	THUMP_THUMPD1_like	coord: 227..369 e-value: 6.81999E-45 score: 150.427

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25439-RA	Carg25439-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006400	tRNA modification
molecular_function	GO:0003723	RNA binding