Carg25436 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25436
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	RNA-binding protein Y14-like
Location	Carg_Chr11: 4285017 .. 4288764 (-)
RNA-Seq Expression	Carg25436
Synteny	Carg25436

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAATTGGGAAACCCTTGTTTGGATTCCCAAAACCCCTGCCATTCCCATCTTCTTCCCTCCCGTTTGCCCTTCAGCATTTGGCAGAACCGATTTGGAGCTCTGAGAGACCTTTGGGTTAGCTATGGCCAGCGCTGATGTTGAGGCTGTCGACTTTGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGTCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACTGGTGGCGCATCTTCCACGTTGGCCGGTGGTTTGAAGAAAACCAAGGGTCGTGGATTTCGAGAAGATTCTGATCGTAACACCCGTCTTGCTGGGTCGGATTTCGATTCCCTCAATTCTGCTGATGGCCCTGGCGTCCAACGATGTTAGTCTTGCCTTTCTCTCTTTCTCTATCTATCTGTTATTCTCATTTACTTCGTTTGACTGATTGCGTTTTTTTTTTTTTTTTTTTTTTCTGTTAATGTCGGTTAGTTTTCCCTCTTGTTTCAATAATGCAAATCTTAGCTGAAATTTTGGTGTTAAAGATTCATGTTTATTAGCTATATATTGCTTCTTGGAGTTGAATGCAAGGTTGGTTTCTTTTAGGAGTTTGGTGGTTGAGAGGATCTTCGGCTACTTATCTAAAGAGGAAGAATTTTCTTCTTTCTAGGGGGGAACTGAGGAAGTATAACCTTGGTTCGTTTGGGTCTTTCAAACGAAAGTTATTTACAATATGGGGTTAGTTCAATTGGGTCATTCAAATGAGCTTACTTACTCTTTATCCCTTTAAACCACAAAAGTTATTAAGAAAATGAAGAAGTTAATCGGGAACTTTTTAGGGAGAGGCAAATAGAGAGGGTAGCGGCACATTGTGAAATGCTTATTGTTCGCTTACCTTCCTCATTGGTTGCTTAAAACAAGGAACCTTTTTGTTCTAGTGTGGGTTTGTAGATTTTCCTTGGAGAGATCATTCAGCATCAGCTGATTATAATCAAGGACGGGTTAAGTGGTCTCAGTTGGTTTACTTGTTCTCCTTCATCCTCTTGTCCTAAATCCCCTTGGTTCCATGCCAATAAGTGTTGATCGTTAGCTGGTCAATTCTTCTATTTTAAGTTGGAAAAGGGGAGAAATTACAGTATTGGTCGGGTGTTTTAGACCTCTACTCATTCCTAGCTTGTATGATGTATGATCTCTCATGTATCAAATATGAGGTTGAAACTCATAGATGGAATAAACTTTACCCTCATAAGTAAATTTTGCTAATTATGCATCCTAATCAATAAGATTCTAAATTGTGGGCTTTGGGTAGTTTGGAGTTTTATTGTGCTAATCGTTTCTCTCTAAAGCTTTTTGTGATTTATTTGTAGTACAATAGATGTGGGGTATGCACATTTGAGTACGTGCCAATTACCTTTGAGCTAGGCTCATTTTGGCTTGTGAGTTGCTTATTGTATTCTAAAAAGTTTGTCTTTTGGGATCAAGCATTCTAAAGTTCCTAATAGGATTCAAGTTTTCTCCGTGGTCCCTTGTCATCTATTTCATCAAAACTAATGACAGGAATATCGGATTCAGTGATGAAATCCTTGAATCTCTCCCTTATTCCCAACAGTGTATTAACCTTAGTAATAGTGTAGAGGATAAGCCACCTTTTATCGTTCACCCTTTTCCTATGGCTGTTGAATGTTGTCTTCCTGGAATTTTGCTCACACGATTGTATGCACATGTATTTTGCAGTCTTTCTCTTGAAAGCCTAAAATGATTTGCCTTTTTGGTGCTAAAATGGTTCTTTGGTGAATGCTTGTATTGCTCATCTTTGGCACTTGTGCTTGAAAAGACGCAATTGATTTTTTTATGATACTCTAATACTTGGAATGATTTCTTTGCTTTGATTCATTTTGTAGCTCTCCTCTGGAGCTTTTTCAACAATTTTTTTTTTTTTTAATTATTATCCTATCTTAGAGATTTAAACTGGGAAGCTCTTCATAATTTCTTCGTTTGGGTTTGGGGTACATCTTATCCTCCCCTTTTGTGCACTTTTTCAATGTTTTTTAGTTATTTATAGAGTTTTTGTCTACTGAACAAGAAAAGCGGCCCAGGACTTTAGTCATTTCAAGAAAAAAAAATCCACAAACAATTATCCTCTTGGATTTATGAGTAAACAAATGATTGGATGTGTCCAAATTTCCATAAACAAGAAAGTTCACGTGTGAGGCAGTATATCCTTTAGCTAGTGCACTTTTTGAACAATTTCTAATTCTAGTTACTGTGTGTAGCTATTGAAGGATGGATCATTCTGGTATCTGGTGTACACGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGACTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGATCGCCGTACTGGGTTTGTCAAGGTATATTTGGTTACCATTTATTTTTATTTTTTCCTATAGAAACCGGAACTTATGTTTTATCTGCTTCCGATTAAGGAGAAGGAGAATATGCATATATGTGGTTGTCTTATAGTTAAAAATGTATAATAACTAGGAAGTTTTGAAAGGAATCCAAATAGAAAACTCATATTTTGATGATGATCGTATGGTTTGTAAGAAGAATGGAGTAGTATTGTAAATTCTATTTTGATATTGAAAAACAATTTAATTTGCGTCTTCTCCCTTTTCTTTGCGTCCCTTCCCAAAAGCACAATAAATTATCTTAATATTAAGTCTACCGATTGGGGCAGTGTTTTTCAAGCTCCATTCGAGTTTATAGCATCTTTCATGAGCATTAAACTTCGAAATCTGGATTATTTTGGTGATAGATATCTGCATAGGTAACACATTGCATGCATATTACAATAGTCTGCTTTGCCATAGGTTATTAAGTGACAGCCGTATGTATTGGAGCTGTAAGTAGAAATTTTTAGTTCCGATATTATATCCCGAGTTGATTGATGAAGATGACTATTCGGGCTTCCATTGCATCTCATCTGTTATCTATTGTTAACGATCCCCGACTCAGAAATTTACCGATTTTCCACTGTGCTGAAGTGCTGATTAATATTTACTATTTTGGTTTTGGCAAGGGGTATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTACCATGGATGGAGCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCGTGGACCCATCAGAAGAAAGAACACAAGGTATGCTTGCTTCTACAAGATCCATTCAATATTTGCAAGGGGAATAGTCACAGTCTATAACCTTTCGTTCTAATTTAACCGCAGACCTGCACGAGAACGACGTTCGAGGAGCCCAAGGAGGAGATATTGATCTGGAGGTGTAGAACTCCAGGTGTGGTGTGGTGTTTATGATTTTAAATTGGAAAGGTGTTGTGTTGTGGATTAGATATTAGGTGATGTTTCTACTGAGCTCTTACTCAACTGTCTCTCAAGATTCCCCTGGTTTCTTGGGGGATCTGAAGTTGATGATATTCCCCCCTTTTTCCTTGGATTACTTGAGGTTCATGCTTTTTTGTGTTGAAACCTGCTATTTTGTATATTCTTTTGTTCCAAATTTGGTTCGGATCGAGGGTTTTGGATTTGATCGTTCTCCGAAAGCCCTCCTCCGTTGGAATCACATGTACTCTTTTCTTTGAGGTCAGAGGTTCAAATTCTCGTTATTTCATATGATTTTAGTATTAATATATTGATTTTATTTTT

mRNA sequence

GAAATTGGGAAACCCTTGTTTGGATTCCCAAAACCCCTGCCATTCCCATCTTCTTCCCTCCCGTTTGCCCTTCAGCATTTGGCAGAACCGATTTGGAGCTCTGAGAGACCTTTGGGTTAGCTATGGCCAGCGCTGATGTTGAGGCTGTCGACTTTGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGTCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACTGGTGGCGCATCTTCCACGTTGGCCGGTGGTTTGAAGAAAACCAAGGGTCGTGGATTTCGAGAAGATTCTGATCGTAACACCCGTCTTGCTGGGTCGGATTTCGATTCCCTCAATTCTGCTGATGGCCCTGGCGTCCAACGATCTATTGAAGGATGGATCATTCTGGTATCTGGTGTACACGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGACTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGATCGCCGTACTGGGTTTGTCAAGGGGTATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTACCATGGATGGAGCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCGTGGACCCATCAGAAGAAAGAACACAAGACCTGCACGAGAACGACGTTCGAGGAGCCCAAGGAGGAGATATTGATCTGGAGGTGTAGAACTCCAGGTGTGGTGTGGTGTTTATGATTTTAAATTGGAAAGGTGTTGTGTTGTGGATTAGATATTAGGTGATGTTTCTACTGAGCTCTTACTCAACTGTCTCTCAAGATTCCCCTGGTTTCTTGGGGGATCTGAAGTTGATGATATTCCCCCCTTTTTCCTTGGATTACTTGAGGTTCATGCTTTTTTGTGTTGAAACCTGCTATTTTGTATATTCTTTTGTTCCAAATTTGGTTCGGATCGAGGGTTTTGGATTTGATCGTTCTCCGAAAGCCCTCCTCCGTTGGAATCACATGTACTCTTTTCTTTGAGGTCAGAGGTTCAAATTCTCGTTATTTCATATGATTTTAGTATTAATATATTGATTTTATTTTT

Coding sequence (CDS)

ATGGCCAGCGCTGATGTTGAGGCTGTCGACTTTGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGTCTCCCCACGAGCTCCTTTTCCTAAGCTCAAATCCGCCATTACTGGTGGCGCATCTTCCACGTTGGCCGGTGGTTTGAAGAAAACCAAGGGTCGTGGATTTCGAGAAGATTCTGATCGTAACACCCGTCTTGCTGGGTCGGATTTCGATTCCCTCAATTCTGCTGATGGCCCTGGCGTCCAACGATCTATTGAAGGATGGATCATTCTGGTATCTGGTGTACACGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGACTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGATCGCCGTACTGGGTTTGTCAAGGGGTATGCGTTGATCGAATACGAGAGCTTTGAGGAAGCAGAGAAAGCAATATCTACCATGGATGGAGCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCGTGGACCCATCAGAAGAAAGAACACAAGACCTGCACGAGAACGACGTTCGAGGAGCCCAAGGAGGAGATATTGA

Protein sequence

MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGRGFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRKNTRPARERRSRSPRRRY

Homology

[Close]

BLAST of Carg25436 vs. NCBI nr
Match: KAG6588202.1 (RNA-binding protein Y14, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022098.1 RNA-binding protein Y14 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 380.6 bits (976), Expect = 8.4e-102
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. NCBI nr
Match: XP_023529212.1 (RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 378.6 bits (971), Expect = 3.2e-101
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. NCBI nr
Match: XP_022931624.1 (RNA-binding protein Y14-like [Cucurbita moschata])

HSP 1 Score: 377.9 bits (969), Expect = 5.5e-101
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISGMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. NCBI nr
Match: XP_022968337.1 (RNA-binding protein Y14-like [Cucurbita maxima])

HSP 1 Score: 368.6 bits (945), Expect = 3.3e-98
Identity = 191/197 (96.95%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRA FPKLKSAITGGASSTLAGGLKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRATFPKLKSAITGGASSTLAGGLKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSAD PG+QRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADCPGIQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RE+RSRSPRRRY
Sbjct: 181 NTRPVREQRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. NCBI nr
Match: XP_038880227.1 (RNA-binding protein Y14A [Benincasa hispida])

HSP 1 Score: 362.5 bits (929), Expect = 2.4e-96
Identity = 187/197 (94.92%), Postives = 191/197 (96.95%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEAD SPRAPFPKLKSAITGGASS+LAGG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFR++SDRNTRLAGSDFDSL SADGPG QRSIEGWIILV+GVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFS GPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. ExPASy Swiss-Prot
Match: F4I9J7 (RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-65
Identity = 141/206 (68.45%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADVSPRAPFPKLKSAITGGASSTLAGGLKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   ADVSPRA  P+LKSAI G    +     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFRE--DSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFG 120
           GRGFRE  DSDR  RL+  DF+SL S   PG QRS+EGWIILVSGVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 DFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGP 180
           DFGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AIS M+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]

BLAST of Carg25436 vs. ExPASy Swiss-Prot
Match: B7FAL5 (RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 3.2e-64
Identity = 137/205 (66.83%), Postives = 161/205 (78.54%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAG--GLKKTK 60
           + +ADVEAVDF+P++DDLMDED    AD +P AP P+L+S I GG      G  G +KTK
Sbjct: 4   VTNADVEAVDFDPDDDDLMDEDA---ADPTP-APAPRLRSTIAGGGGGGGGGDDGQRKTK 63

Query: 61  GRGFRED-SDRNTRLAG----SDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQN 120
           GRGFR+D + R++RLAG    SDFDSL S  GPG  RSIEGWI+LV+GVHEEAQEDDL N
Sbjct: 64  GRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHN 123

Query: 121 AFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFS 180
            F DFG++KNLHLNLDRRTGFVKGYALIEYE+FEEA+ AI  +DG ELLTQII+VDWAFS
Sbjct: 124 IFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFS 183

Query: 181 RGPIRRKNTRPARERRSRS-PRRRY 198
            GP++R+N R    RRSRS PRRRY
Sbjct: 184 NGPVKRRNIRKRSPRRSRSPPRRRY 204

[Close]

BLAST of Carg25436 vs. ExPASy Swiss-Prot
Match: Q6ATR0 (RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 9.5e-40
Identity = 101/203 (49.75%), Postives = 129/203 (63.55%), Query Frame = 0


Query: 2   ASADVEAVDF---EPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTK 61
           A+ DVE VD+   E EE+D MDED           P P + S            G+ +++
Sbjct: 4   AAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHIVSQ-----------GVMRSR 63

Query: 62  GRGFREDSDRNTRLAGSD---FDSLNSADGP--GVQRSIEGWIILVSGVHEEAQEDDLQN 121
           GR       R+T +  S+   FDSL  A  P  G QRSIEGWI+LVSGV E+A+EDDL N
Sbjct: 64  GRLL----GRSTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYN 123

Query: 122 AFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFS 181
            F DFG +K+LHLNL+RRTG+ KGYAL+EYESFEEA+ AI  M+G +LLT+ + VDWAFS
Sbjct: 124 TFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFS 183

Query: 182 RGPIRRKNTRPARERRSRSPRRR 197
           RGPI++  +     RRSR+P RR
Sbjct: 184 RGPIQKLTSTRPLHRRSRTPPRR 191

[Close]

BLAST of Carg25436 vs. ExPASy Swiss-Prot
Match: Q6PH90 (RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 2.6e-37
Identity = 81/143 (56.64%), Postives = 105/143 (73.43%), Query Frame = 0


Query: 55  KKTKGRGFREDSDRNTRLAGSDFDSL-NSADGPGVQRSIEGWIILVSGVHEEAQEDDLQN 114
           KK KGRGF  D    TR+   D+DS+    D PG QRS+EGWI+ V+GVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTRTRIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFS 174
            FG+FGEIKN+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q ++VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGFV 152

Query: 175 RGPIRRKNTRPARERRSRSPRRR 197
           RGP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]

BLAST of Carg25436 vs. ExPASy Swiss-Prot
Match: Q28BZ1 (RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.5e-37
Identity = 81/143 (56.64%), Postives = 104/143 (72.73%), Query Frame = 0


Query: 55  KKTKGRGFREDSDRNTRLAGSDFDSL-NSADGPGVQRSIEGWIILVSGVHEEAQEDDLQN 114
           KK KGRGF  D     R+   D+DS+    D PG QRS+EGWI+ V+GVHEEA E+D+ +
Sbjct: 33  KKRKGRGFGADEGTRARIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHD 92

Query: 115 AFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFS 174
            FG+FGEIKN+HLNLDRRTGF+KGYAL+EYE+++EA  A+  ++G +L+ Q I+VDW F 
Sbjct: 93  KFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGFV 152

Query: 175 RGPIRRKNTRPARERRSRSPRRR 197
           RGP   K  R +  RRSRSP RR
Sbjct: 153 RGP--PKGKRRSGRRRSRSPERR 172

[Close]

BLAST of Carg25436 vs. ExPASy TrEMBL
Match: A0A6J1EUR9 (RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111437784 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.6e-101
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISGMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRPARERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. ExPASy TrEMBL
Match: A0A6J1HTB7 (RNA-binding protein Y14-like OS=Cucurbita maxima OX=3661 GN=LOC111467599 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 1.6e-98
Identity = 191/197 (96.95%), Postives = 193/197 (97.97%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADVSPRA FPKLKSAITGGASSTLAGGLKKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRATFPKLKSAITGGASSTLAGGLKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFREDSDRNTRLAGSDFDSLNSAD PG+QRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE
Sbjct: 61  GFREDSDRNTRLAGSDFDSLNSADCPGIQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFSRGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSRGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RE+RSRSPRRRY
Sbjct: 181 NTRPVREQRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. ExPASy TrEMBL
Match: A0A0A0M2V3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95
Identity = 185/197 (93.91%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEAD SPRAPFPKLKSAITGGASS+L+GG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFRE+SDRNTRLAGSDFDSL SADGPG QRSIEGWIILV+GVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFS GPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. ExPASy TrEMBL
Match: A0A1S3BNH9 (RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 1.3e-95
Identity = 185/197 (93.91%), Postives = 190/197 (96.45%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEAD SPRAPFPKLKSAITGGASS+L+GG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFRE+SDRNTRLAGSDFDSL SADGPG QRSIEGWIILV+GVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAIS MDGAELLTQIINVDWAFS GPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           N RPARERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. ExPASy TrEMBL
Match: A0A6J1HB67 (RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 182/197 (92.39%), Postives = 189/197 (95.94%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADVSPRAPFPKLKSAITGGASSTLAGGLKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEAD SPRAPFPKLKSAITGGASS+LAGG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREDSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGE 120
           GFRE+SDRNTRL GSDFDSL SADGPG QRSIEGWIILV+GVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYE+FEEAEKAIS MDG+ELLTQIINVDWAFS GPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPARERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Carg25436 vs. TAIR 10
Match: AT1G51510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-66
Identity = 141/206 (68.45%), Postives = 160/206 (77.67%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADVSPRAPFPKLKSAITGGASSTLAGGLKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   ADVSPRA  P+LKSAI G    +     KKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFRE--DSDRNTRLAGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFG 120
           GRGFRE  DSDR  RL+  DF+SL S   PG QRS+EGWIILVSGVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 DFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSRGP 180
           DFGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AIS M+GAELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPARERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]

BLAST of Carg25436 vs. TAIR 10
Match: AT3G11400.1 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-09
Identity = 30/102 (29.41%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 73  AGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRT 132
           AG+D     SA G  ++R  +   + V+ + E+ +E DL   F  FG +  +++ +D++T
Sbjct: 195 AGAD----RSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKT 254

Query: 133 GFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSR 175
           G  +G+  + + S E+A++AI+ ++G      I+ V+WA  R
Sbjct: 255 GVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR 292

[Close]

BLAST of Carg25436 vs. TAIR 10
Match: AT3G11400.2 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-09
Identity = 30/102 (29.41%), Postives = 58/102 (56.86%), Query Frame = 0


Query: 73  AGSDFDSLNSADGPGVQRSIEGWIILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRT 132
           AG+D     SA G  ++R  +   + V+ + E+ +E DL   F  FG +  +++ +D++T
Sbjct: 222 AGAD----RSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKT 281

Query: 133 GFVKGYALIEYESFEEAEKAISTMDGAELLTQIINVDWAFSR 175
           G  +G+  + + S E+A++AI+ ++G      I+ V+WA  R
Sbjct: 282 GVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPR 319

[Close]

BLAST of Carg25436 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 56.6 bits (135), Expect = 2.6e-08
Identity = 25/78 (32.05%), Postives = 44/78 (56.41%), Query Frame = 0


Query: 97  ILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTM 156
           + + G+     ED L+ AF  +GE+ +  + LDR TG  +G+  + + S E A  AI  +
Sbjct: 42  LFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQAL 101

Query: 157 DGAELLTQIINVDWAFSR 175
           DG +L  +++ V++A  R
Sbjct: 102 DGRDLHGRVVKVNYANDR 119

[Close]

BLAST of Carg25436 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07
Identity = 36/112 (32.14%), Postives = 58/112 (51.79%), Query Frame = 0


Query: 97  ILVSGVHEEAQEDDLQNAFGDFGEIKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISTM 156
           +LV  +      DDL   F  +G++ ++ +  DRRTG  +G+A + Y+  +EA KA+  +
Sbjct: 18  LLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERL 77

Query: 157 DGAELLTQIINVDWA--------FSRG-----PIRRKNTRPARERRSRSPRR 196
           DG  +  + I V +A         S+G     P + + +R    RRSRSPRR
Sbjct: 78  DGRVVDGREITVQFAKYGPNAEKISKGRVVEPPPKSRRSRSRSPRRSRSPRR 129

The following BLAST results are available for this feature:

BLAST of Carg25436 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588202.1	8.4e-102	100.00	RNA-binding protein Y14, partial [Cucurbita argyrosperma subsp. sororia] >KAG702...	[more]
XP_023529212.1	3.2e-101	99.49	RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo]	[more]
XP_022931624.1	5.5e-101	99.49	RNA-binding protein Y14-like [Cucurbita moschata]	[more]
XP_022968337.1	3.3e-98	96.95	RNA-binding protein Y14-like [Cucurbita maxima]	[more]
XP_038880227.1	2.4e-96	94.92	RNA-binding protein Y14A [Benincasa hispida]	[more]

BLAST of Carg25436 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I9J7	1.7e-65	68.45	RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1	[more]
B7FAL5	3.2e-64	66.83	RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 S...	[more]
Q6ATR0	9.5e-40	49.75	RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 S...	[more]
Q6PH90	2.6e-37	56.64	RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1	[more]
Q28BZ1	7.5e-37	56.64	RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1	[more]

BLAST of Carg25436 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EUR9	2.6e-101	99.49	RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111437784 PE=4 ...	[more]
A0A6J1HTB7	1.6e-98	96.95	RNA-binding protein Y14-like OS=Cucurbita maxima OX=3661 GN=LOC111467599 PE=4 SV...	[more]
A0A0A0M2V3	1.3e-95	93.91	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV...	[more]
A0A1S3BNH9	1.3e-95	93.91	RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1	[more]
A0A6J1HB67	1.4e-94	92.39	RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 ...	[more]

BLAST of Carg25436 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51510.1	1.2e-66	68.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G11400.1	6.8e-09	29.41	eukaryotic translation initiation factor 3G1	[more]
AT3G11400.2	6.8e-09	29.41	eukaryotic translation initiation factor 3G1	[more]
AT5G61030.1	2.6e-08	32.05	glycine-rich RNA-binding protein 3	[more]
AT5G64200.1	1.3e-07	32.14	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008111	RNA-binding motif protein 8	PRINTS	PR01738	RNABINDINGM8	coord: 86..100 score: 67.33 coord: 142..158 score: 42.35 coord: 51..63 score: 50.77 coord: 160..172 score: 55.38
IPR008111	RNA-binding motif protein 8	PANTHER	PTHR45894	RNA-BINDING PROTEIN 8A	coord: 2..197
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..169 e-value: 1.4E-18 score: 77.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 97..161 e-value: 5.4E-15 score: 55.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 95..173 score: 15.681473
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 47..189 e-value: 1.3E-28 score: 101.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..85
None	No IPR available	PANTHER	PTHR45894:SF6	RNA-BINDING PROTEIN Y14A-LIKE	coord: 2..197
IPR033744	RBM8, RNA recognition motif	CDD	cd12324	RRM_RBM8	coord: 89..176 e-value: 2.17098E-59 score: 178.95
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 92..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25436-RA	Carg25436-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0035145	exon-exon junction complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding