Carg25427 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25427
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 4335964 .. 4336335 (+)
RNA-Seq Expression	Carg25427
Synteny	Carg25427

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTCAAGATCCTTACGGTAATTAATCGTATGGCTTTGATTGTATTATATTATATTATGACTTCCCTTACTTACTTACCCAATACATTTTAATAGAAAATATTCACTAGTTTTTCTTGTCCGTCAATCCCGTGCGGCGTGGCGTGGATCCCATTGGGCAATTTCCATCCTCAACGCGACAAAACGCAATTATCTGTACTGATGATTGATTATGAGCATCGTCAATGTGACTACTGTATTTCGCAGCAAAAACCAAAAGGAAAACGGATTATATTGGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGTTGATGATGGTATTATTCTGGGTCGTAGATACGGTTCTAATGGGTGA

mRNA sequence

ATGAAGGTCAAGATCCTTACGAAAATATTCACTAGTTTTTCTTGTCCGTCAATCCCGTGCGGCGTGGCGTGGATCCCATTGGGCAATTTCCATCCTCAACGCGACAAAACGCAATTATCTGTACTGATGATTGATTATGAGCATCGTCAATGTGACTACTGTATTTCGCAGCAAAAACCAAAAGGAAAACGGATTATATTGGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGTTGATGATGGTATTATTCTGGGTCGTAGATACGGTTCTAATGGGTGA

Coding sequence (CDS)

ATGAAGGTCAAGATCCTTACGAAAATATTCACTAGTTTTTCTTGTCCGTCAATCCCGTGCGGCGTGGCGTGGATCCCATTGGGCAATTTCCATCCTCAACGCGACAAAACGCAATTATCTGTACTGATGATTGATTATGAGCATCGTCAATGTGACTACTGTATTTCGCAGCAAAAACCAAAAGGAAAACGGATTATATTGGAGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGTTGATGATGGTATTATTCTGGGTCGTAGATACGGTTCTAATGGGTGA

Protein sequence

MKVKILTKIFTSFSCPSIPCGVAWIPLGNFHPQRDKTQLSVLMIDYEHRQCDYCISQQKPKGKRIILEKEEEEEEEEEEEEDVDDGIILGRRYGSNG

Homology

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BLAST of Carg25427 vs. NCBI nr
Match: KAG7022106.1 (hypothetical protein SDJN02_15835, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198.7 bits (504), Expect = 2.2e-47
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MKVKILTKIFTSFSCPSIPCGVAWIPLGNFHPQRDKTQLSVLMIDYEHRQCDYCISQQKP 60
          MKVKILTKIFTSFSCPSIPCGVAWIPLGNFHPQRDKTQLSVLMIDYEHRQCDYCISQQKP
Sbjct: 1  MKVKILTKIFTSFSCPSIPCGVAWIPLGNFHPQRDKTQLSVLMIDYEHRQCDYCISQQKP 60

Query: 61 KGKRIILEKEEEEEEEEEEEEDVDDGIILGRRYGSNG 98
          KGKRIILEKEEEEEEEEEEEEDVDDGIILGRRYGSNG
Sbjct: 61 KGKRIILEKEEEEEEEEEEEEDVDDGIILGRRYGSNG 97

The following BLAST results are available for this feature:

BLAST of Carg25427 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022106.1	2.2e-47	100.00	hypothetical protein SDJN02_15835, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Carg25427 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25427 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25427 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 62..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25427-RA	Carg25427-RA	mRNA