Carg25421 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25421
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRegulator of chromosome condensation (RCC1) family with FYVE zinc finger domain
LocationCarg_Chr11: 4359833 .. 4365259 (-)
RNA-Seq ExpressionCarg25421
SyntenyCarg25421
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAGGATGGATAGGATGGCTCAGGATCTTAGTAGGACTGGCGCCGGCGAGAGAGATGTCGAGCAGGTACTTTTTCACATCTTCAATCCTTTTGTTATGTTTCCACGCAGTTATATGTTTATTTCGAGATTCAGAAAAAGAGAAAGAAAAAAAACGTATATTGTGTGCTTCAATCGTGATCTTGAGCTTATTTTGCTATCTATGGCATCCTTAACCTCCTGTTTCCTTGATTATCAAGTCAGATGCTCACGTTGGTCACATTTTTGTTTTGGTTTTTACCTTTTCCGCTAGTTCTATATAATGATAATCTTGCATCAGAATGTGATCAAGGGGATTTAGTTGGGTGTGTATACATATCTAGGAAGCATGAGGGTGTGTTTATCCTGAACTCTTGTAATCCTTTTTTGAAGTTCTATTTTAGTCTCTAACATTACTAAAAGTAGGTAGGGTTAGATTTATCCTAAATACTATTTTACAATCTTAGCATTCTCTTGAGCATTTGGAAGATCTTTTGCAATATTATGACTTGGGGTTCTTCCTTTTCCCTTCTGTTGTAAATTCATTTGTCAACGAAATTCTCTTTTCTCTATTAAGCGAAAGTGTTATGAAGAGAATTTTGACATCACTAACGGGTTAGTGCCCATGGTACGAAGTAGAAATACCGAGGGCCGTTACGTGGGAGAGAAAAAGATGATCAGTTCTTATTGGTTTGGAGTATCATAAGCCCTCAGTCTTGATTGTTTAAATTCTGAGGAGGGATGAAGAATAGTATTATTGAGATTAGATGGAGAATAGTATTGTTGCGATTTTCTTGTGGGTTGAGGTAAGGTCCACATCTATCATCTTTGATTTTGTAAAGACACCTTGCTCTTCTTGGTCCAACTCCATAATACAACTGCCAAGTGTTTAAATTGGTGAAGGAGTTGGCTTCAATGTCCAAACTCAGGATTAACCTTCTTGTTAAAGGAATGACCTTAATTTAAGGAATATCGGGTAACTCCCAGCTTTAATTTAAGGAATATTTTTGTAATCCCATTAAATAGTTACCTAGTGTTTAGGAATTTATTTTTCTTGTACTTTTACCTAGTATCTAAGTATTTAATTAGATTTATTTTATGTATTGTTTCCTAGTATCTAGGGATTTAGTTATTTTTCTATAGTATGAAAGATACAAAGACACATATATCTTTCTAGAAATTAATTAAAAAGTGAGTAAGATAATTTTCACTTACAACATGGTATCAGAGTCATTCTATTATGAGAGGTCTAATTAATCAATATAGCCTTTATAGTTACCAATCTTCTACCTTGACCAAAATTTATTTGGAGTATTCATAGCTACCGATCTTCCACTTTGAGCCCCACTCGTGGAAGTCAACAATCCCATTTTTGCTCGACAGCCCATTTTCCAATGTGAGAATGTATATATATATTTTCTTTTGTAGAATACTTGAAGGAAGGGAGACCACTTATTGGCCTTTTTTTCTTGGCTCATTCAAGCCCATTTTTTGCCCAATAACAAATCCGAAGCAAGGAAAATGTATGAGCGGCGTTGGCCCGAGCCCACTATTTTTCCATTTTTATTCACTAAAGTTTTCTGTTCAGCATTTGCTTGAAGAGGAGGCCCATTTTTCTTTGAGAGATAGTCATGTCAGGAGAATCAAAATTTTTGTCAATAGTAGAAGAAATTCCTATAGACAAATGTGATAATGAATCACTCTAAGGGAAAGTAAGATTCTGATTACCTTGTTGATCAAATATCTCAAGACAAGAACATTTGATTGAGATCTGAATTACTCCACAAGCAAGATCAATTATTTCAAGCTGGAAAGATTTTACACTTGCAATCTGAACTACATAAAATTGCAAAGAAACGTAGCCCTTGGCTAAAGGAAGCAAAAATGCTCTTTTTACTACATTTTTCAAGTCTCCTTTGCAAATATAATATACATGGCTTTATATAGCCTCAAAATGAAACCCTTTACCTTCCATGAGCCATTTCAAGAGTTTGTAACCTTCATAACCATAATTAGCCTTATGTAAATGTAACCTAAAAATAAATAAAAAGTCTTAAAACTTAATATACATTAATGAAACACCAAAAATCTAGATTTTAATCATCCATCGTAAACTTTTAACCATCTAAGAATAAATTGAAGCCATATTTGAAGTATCTTTAAGCTCTTGTTGCATAAATGAGACTTGATTCTTCTTGAATGTGAAATTGATTGCAACTTGAGTTCAATTTTAATAGAACTTGGCTTTATCTTTAATAGAACCTGACTTTATCTTGTGGTAATTTGAACAACATTATTCACAACTTCCTTCAAGTTCATTGTATGATTGAGATGCAATCAATCATATCACAATGTCCGAAGAAAGATGATATTCAACCCATTCGATATTGACTCAATAGAGAAAAAGAAAATCTTAAATGGTCTTAAATTGTGTGGACATACCTTTAAGGATATGAAATTTTTTGACATTTCATTGGACCAAGACCAGCAAAGACGTACCCAGGATTTGTTGCATGGTATGAGAATGACTCCATATGAATGTCATGGCTTGATCAAGTTCGTGTACAAATCATTGAAGAAGCAGAAACAAGATCTCTAGAAGAAACACGCTTTCCTACTTGGGCAAATGAAGTCTTTTGTTTGACGAACGACCTAGTTTTAGATGCATCAACATAAAGAAAGAAACAATGGAAGAGACAACCAATGAAAGAGTAATAAAGACAATTTATGGTGTACTCACGGCAAGAAACTATGACACATGAATGAGAGTTGTTGGAAGTTGAACGGAAAACCTCCTGGCCGTGAATGGGAAAATCGGGGAGGCTCATAGAATCATGGTTGGAGAAACAAGGAAGAAATGTTGAATGCACGAGCTTACATTGCAGAGGAACCAAATCAGAATAGAAATCATCAATTGTGAGGCTCACAAAATCATGGTTGGAGGAACTAGGGAGAAATTTCGAAGGAACGGACGTACACCAAAGAGGAATCTAAATGAGAACAAAAGTCACCAATCGTGGAAACTAGTGGTTTCTATAGTGAAGCGTTTGAGAGATTGAGGGTGTTTTTGGACTCTCTCAACAAGCCATCAAATTCTAGTGTTTTGACAATCTCAAGTAAGTCTTCATTCATCTTTTGTATAAATCCTTTAGAGATAGTTAGATTAACTTTTGGATTATAGACTTTGGTGCAACTGATCACATGACCCTCACTCACAATGTTTAAAACATATAAACCTTGTTTGAGGAATCAAAAGATTGCAGGCAAATGGAATTAGTGCAACTGTTGCAAGAATAGGCGATGTATCTATCTCTTAAACCCTAAAACATGTCCTACATGTTTCAAACTATCTAATAGTCTCATTTCTATACAACAACTTACTCATGGATGCCACTGTAGTGTTTCTTTCTACTCGTCATGTTGTGTTTTTGAGGACCAGGTCTCGAGACGGTTGATTGGACTTTCTAAGGAATTGAAGGACCTATACTACTTGCAACTACCTAAGAAGACAACAAGACATTTCCTTGTTCAGTTCTTAGTTCCTCAAATAAAGATGCGATTTGGTTACATCACCTTCACATGGGTTGTCTCTCATTTAGAGTCTTGAAAATTATGTTTCCAGAATTGTTTCAAGGATTTCAAGGTTTTGAGTTTCATTGTGATATAATGTGAATTTTCCAAACATACACGTGTATCGTTTTCTATCAATTAAAATAAAAGATCTACGCCTTTTCATTTAATTCATAGTGATATATGGGCACCCTCAACTGTTACAAGCCATTCAACCGGTGCCCATTGGATTCTCACATTAATTGACAATTTTGTGAGCCCCATGATTGGTGCTTGTGTAGCTACATTTTAGCGTACTTTTTATTATTTCATTCACATCAATGACATTGTCTCTTATCTAAAAATAGAACTTTACTTATGGTGCTTCCATTATTAAATCTTTGACTTTTTCCTTTATCTTTGTGTTTATATTTTTCGTACTCTTTATTATACATAAAGTAGGTGGACGAGAAGAGCTAGTGTCATGCTTGAACATATCAATATCTTTTCCATATTAATGTGAAAGCCCATTTCTACGCTTTGCTTGGTTGATCTAATTCTGGTTATTTATTTATTTTAATTCCTATGTAGACAAGCACACAAACATTTTATGATAGATTCCCCGAGCTTTATGTTAGCCTTTTAAGTCTAATTCTGTAATCATGCTGAGTACAGTATTTCTGCCTCTTCATCATTCTTATCATAGGCCATTACTGCTTTGAAGAAAGGAGCCTATTTGCTCAAGTATGGGAGAAGGGGGAAGCCAAAGTTTTGTCCTTTCCGCATTTCCAATGTGAGTACGGTCTTGTTTCTCCAGATGAAAAAGGAATACAAGCACATATTTTCTAAGTGCATAGCTTTGTAACTACTTCTATATGTATTATAATTTATTTCTTATATAGTGAAGGTGTGTACAAACTAGCTCATACATACATAGATTTAAAAAAAAAGAAAAAAAGAAGAGTAATCCTGCGGGTTTATCTTCTTGTTTATTTTCTACATGTTTTGAGTATATAAGCATGCTTTGATCTGATAATTTGTCGTGCAATCAGATTTGATTATGATTTTGATATAACTATCCATGATTTTGAAAATGGACATATTTGTTAAGATATATATTTTATCAAATATATATCATTTTTTATACCAGAAGAGAATTCAAAGTCACTAAGTTTATGCATTTATATGCTTAGAGAAACTAGTTTGATGATGCATTTCCCTCTAAAAGTTTATTATTTTTGTTCTATATTATTACATGTCTATTTCATATATTTCACGAGTGTTTGATATGTATCTTACAAATGTCGGTCTTATATTGACTTTGTACAATTAGTGTCTAATACCTTGTGTATTGTGCTAACCAAGTGTTCCATACAAGTCGGAGAAACACACAGACACACTAGCCAGACTAAAGTGTCCGTACTTCTTCATTTTTCATATTAGTACGTGTGCTTATTCATATAATTCTATGCAGAATGTATAATTTTCAAAAAGTATTTTTTGTAATTAAGCATATAATTTTTTTTTTCTGCGTGTGGTTTTAATGGGTAGATATTGGATTAGCCATCTTTTAGCTTGTCTCTGTATTTCACCTGCACTTCCATTGCAAAGATTCTGAGTAATATCTTTATGGTTTCAGGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCATCTTAAGCTCAGCCACGTCTCTAGAATTATTTCTGGGCAACGGACTGTAAGCCTCCAATTCAAAATAATTATAATTTCCGAGTATCCAATTCAGAATAACTATTATTGGGAGTACCGAATTCAAAATTGTTATCATTTGCGGATATTTCCCATGATATCTTTAATGGTCCACTAG

mRNA sequence

ATGGATAGGATGGATAGGATGGCTCAGGATCTTAGTAGGACTGGCGCCGGCGAGAGAGATGTCGAGCAGGCCATTACTGCTTTGAAGAAAGGAGCCTATTTGCTCAAGTATGGGAGAAGGGGGAAGCCAAAGTTTTGTCCTTTCCGCATTTCCAATGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCATCTTAAGCTCAGCCACGTCTCTAGAATTATTTCTGGGCAACGGACTGTAAGCCTCCAATTCAAAATAATTATAATTTCCGAGTATCCAATTCAGAATAACTATTATTGGGAGTACCGAATTCAAAATTGTTATCATTTGCGGATATTTCCCATGATATCTTTAATGGTCCACTAG

Coding sequence (CDS)

ATGGATAGGATGGATAGGATGGCTCAGGATCTTAGTAGGACTGGCGCCGGCGAGAGAGATGTCGAGCAGGCCATTACTGCTTTGAAGAAAGGAGCCTATTTGCTCAAGTATGGGAGAAGGGGGAAGCCAAAGTTTTGTCCTTTCCGCATTTCCAATGATGAGTCTGTTTTGATATGGTTCTCGGGGAAAGAGGAGAAGCATCTTAAGCTCAGCCACGTCTCTAGAATTATTTCTGGGCAACGGACTGTAAGCCTCCAATTCAAAATAATTATAATTTCCGAGTATCCAATTCAGAATAACTATTATTGGGAGTACCGAATTCAAAATTGTTATCATTTGCGGATATTTCCCATGATATCTTTAATGGTCCACTAG

Protein sequence

MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNNYYWEYRIQNCYHLRIFPMISLMVH
Homology
[Close]
BLAST of Carg25421 vs. NCBI nr
Match: KAG7022112.1 (hypothetical protein SDJN02_15841, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 255.0 bits (650), Expect = 3.4e-64
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0 

Query: 1   MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
           MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF
Sbjct: 1   MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60

Query: 61  SGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNNYYWEYRIQNCYHLRIFPMIS 120
           SGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNNYYWEYRIQNCYHLRIFPMIS
Sbjct: 61  SGKEEKHLKLSHVSRIISGQRTVSLQFKIIIISEYPIQNNYYWEYRIQNCYHLRIFPMIS 120

Query: 121 LMVH 125
           LMVH
Sbjct: 121 LMVH 124

[Close]
BLAST of Carg25421 vs. NCBI nr
Match: XP_022973773.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima])

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]
BLAST of Carg25421 vs. NCBI nr
Match: KAG6588213.1 (PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]
BLAST of Carg25421 vs. NCBI nr
Match: XP_023530885.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 162.9 bits (411), Expect = 1.7e-36
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]
BLAST of Carg25421 vs. NCBI nr
Match: XP_022931972.1 (PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata])

HSP 1 Score: 159.8 bits (403), Expect = 1.5e-35
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MD MAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDWMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]
BLAST of Carg25421 vs. ExPASy Swiss-Prot
Match: Q947D2 (PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=PRAF1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.1e-17
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 0 

Query: 10 DLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLK 69
          DL      + ++EQA+  LKKG  LLKYGR+GKPKF PFR+S+DE  LIW S   EK LK
Sbjct: 3  DLVTYSNADHNLEQALITLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLK 62

Query: 70 LSHVSRIISGQRTVSLQ 87
          L+ VS+I+ GQRT   Q
Sbjct: 63 LASVSKIVPGQRTAVFQ 79

[Close]
BLAST of Carg25421 vs. ExPASy TrEMBL
Match: A0A6J1IE52 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111472331 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 8.4e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]
BLAST of Carg25421 vs. ExPASy TrEMBL
Match: A0A6J1EVB8 (PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111438295 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.1e-36
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 4  MDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 63
          MD MAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK
Sbjct: 1  MDWMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGK 60

Query: 64 EEKHLKLSHVSRIISGQRT 83
          EEKHLKLSHVSRIISGQRT
Sbjct: 61 EEKHLKLSHVSRIISGQRT 79

[Close]
BLAST of Carg25421 vs. ExPASy TrEMBL
Match: A0A1Q3B2B4 (RCC1 domain-containing protein/FYVE domain-containing protein/BRX domain-containing protein/Mcp5_PH domain-containing protein/BRX_N domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_05624 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 78/86 (90.70%), Postives = 79/86 (91.86%), Query Frame = 0 

Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M RMDRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRMDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]
BLAST of Carg25421 vs. ExPASy TrEMBL
Match: A0A5J5UDJ3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G116400v1 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.9e-35
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0 

Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRTDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]
BLAST of Carg25421 vs. ExPASy TrEMBL
Match: A0A0B0MKP3 (Putative E3 ubiquitin-protein ligase HERC1 OS=Gossypium arboreum OX=29729 GN=LOC108456859 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 7.9e-35
Identity = 77/86 (89.53%), Postives = 78/86 (90.70%), Query Frame = 0 

Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R DRMA DLSRTG  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIWF
Sbjct: 1  MSRTDRMASDLSRTGPVERDVEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGKEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]
BLAST of Carg25421 vs. TAIR 10
Match: AT5G12350.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 145.6 bits (366), Expect = 2.7e-35
Identity = 71/86 (82.56%), Postives = 74/86 (86.05%), Query Frame = 0 

Query: 1  MDRMDRMAQDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWF 60
          M R  RMA DLSR G  ERD+EQAI ALKKGAYLLKYGRRGKPKFCPFR+SNDE+VLIWF
Sbjct: 1  MSRNGRMASDLSRAGPVERDIEQAIIALKKGAYLLKYGRRGKPKFCPFRLSNDETVLIWF 60

Query: 61 SGKEEKHLKLSHVSRIISGQRTVSLQ 87
          SG EEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 SGNEEKHLKLSHVSRIISGQRTPIFQ 86

[Close]
BLAST of Carg25421 vs. TAIR 10
Match: AT5G19420.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 142.5 bits (358), Expect = 2.3e-34
Identity = 72/87 (82.76%), Postives = 74/87 (85.06%), Query Frame = 0 

Query: 1  MDRMDRMA-QDLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIW 60
          M R  RM   DLSR G   RD+EQAITALKKGAYLLKYGRRGKPKFCPFR+SNDESVLIW
Sbjct: 1  MSRNGRMTPSDLSRAGPVTRDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESVLIW 60

Query: 61 FSGKEEKHLKLSHVSRIISGQRTVSLQ 87
          FSGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 61 FSGKEEKHLKLSHVSRIISGQRTPIFQ 87

[Close]
BLAST of Carg25421 vs. TAIR 10
Match: AT5G19420.2 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 126.7 bits (317), Expect = 1.3e-29
Identity = 68/104 (65.38%), Postives = 70/104 (67.31%), Query Frame = 0 

Query: 10  DLSRTGAGERDVEQ---------------------------AITALKKGAYLLKYGRRGK 69
           DLSR G   RD+EQ                           AITALKKGAYLLKYGRRGK
Sbjct: 18  DLSRAGPVTRDIEQLKIELYSTFGVSKLDSSYILENKNALHAITALKKGAYLLKYGRRGK 77

Query: 70  PKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRIISGQRTVSLQ 87
           PKFCPFR+SNDESVLIWFSGKEEKHLKLSHVSRIISGQRT   Q
Sbjct: 78  PKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQ 121

[Close]
BLAST of Carg25421 vs. TAIR 10
Match: AT1G69710.1 (Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain )

HSP 1 Score: 117.9 bits (294), Expect = 6.0e-27
Identity = 53/73 (72.60%), Postives = 63/73 (86.30%), Query Frame = 0 

Query: 10 DLSRTGAGERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLK 69
          D  RT   ERDVEQAIT+LKKG+YLLKYGRRGKPKFCPF++++DES L+W+SGKEEK +K
Sbjct: 16 DSLRTSFSERDVEQAITSLKKGSYLLKYGRRGKPKFCPFQLTSDESALVWYSGKEEKQIK 75

Query: 70 LSHVSRIISGQRT 83
          LS V RI+ GQRT
Sbjct: 76 LSQVLRIVPGQRT 88

[Close]
BLAST of Carg25421 vs. TAIR 10
Match: AT3G47660.1 (Regulator of chromosome condensation (RCC1) family protein )

HSP 1 Score: 100.5 bits (249), Expect = 9.9e-22
Identity = 50/90 (55.56%), Postives = 61/90 (67.78%), Query Frame = 0 

Query: 18  ERDVEQAITALKKGAYLLKYGRRGKPKFCPFRISNDESVLIWFSGKEEKHLKLSHVSRII 77
           +R+ EQAI  LKKGAYLLKYGRRGKPKF PFR+S+DE  L+W+ GK+EK LKLS V+RII
Sbjct: 14  DRENEQAIAILKKGAYLLKYGRRGKPKFYPFRLSSDEIYLLWYCGKKEKRLKLSSVTRII 73

Query: 78  SGQRTVSLQFKIIIISEYPIQNNYYWEYRI 108
            GQRT        +   YP     Y  + +
Sbjct: 74  PGQRTA-------VFRRYPQPTKEYQSFSL 96

The following BLAST results are available for this feature:
BLAST of Carg25421 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7022112.13.4e-64100.00hypothetical protein SDJN02_15841, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022973773.11.7e-36100.00PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita maxima][more]
KAG6588213.11.7e-36100.00PH, RCC1 and FYVE domains-containing protein 1, partial [Cucurbita argyrosperma ... [more]
XP_023530885.11.7e-36100.00PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita pepo subsp. pepo][more]
XP_022931972.11.5e-3598.73PH, RCC1 and FYVE domains-containing protein 1-like [Cucurbita moschata][more]
BLAST of Carg25421 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q947D21.1e-1755.84PH, RCC1 and FYVE domains-containing protein 1 OS=Arabidopsis thaliana OX=3702 G... [more]
BLAST of Carg25421 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IE528.4e-37100.00PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1EVB87.1e-3698.73PH, RCC1 and FYVE domains-containing protein 1-like OS=Cucurbita moschata OX=366... [more]
A0A1Q3B2B41.6e-3590.70RCC1 domain-containing protein/FYVE domain-containing protein/BRX domain-contain... [more]
A0A5J5UDJ37.9e-3589.53Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A09G116400v1 PE... [more]
A0A0B0MKP37.9e-3589.53Putative E3 ubiquitin-protein ligase HERC1 OS=Gossypium arboreum OX=29729 GN=LOC... [more]
BLAST of Carg25421 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G12350.12.7e-3582.56Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [more]
AT5G19420.12.3e-3482.76Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [more]
AT5G19420.21.3e-2965.38Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [more]
AT1G69710.16.0e-2772.60Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [more]
AT3G47660.19.9e-2255.56Regulator of chromosome condensation (RCC1) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011993PH-like domain superfamilyGENE3D2.30.29.30coord: 19..97
e-value: 5.6E-15
score: 57.2
NoneNo IPR availablePANTHERPTHR22870:SF406REGULATOR OF CHROMOSOME CONDENSATION 1/BETA-LACTAMASE-INHIBITOR PROTEIN II-RELATEDcoord: 18..87
NoneNo IPR availablePANTHERPTHR22870REGULATOR OF CHROMOSOME CONDENSATIONcoord: 18..87
NoneNo IPR availableSUPERFAMILY50729PH domain-likecoord: 20..84

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25421-RACarg25421-RAmRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016874 ligase activity
molecular_function GO:0046872 metal ion binding