Carg25418 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25418
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Unknown protein
Location	Carg_Chr11: 4386118 .. 4386531 (+)
RNA-Seq Expression	Carg25418
Synteny	Carg25418

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGGTCCGTAAAACCCAATTGGAAAAGGCTTTCAAATTAGAGAACAGTGCGAATCACAGGGCAATTCAAGGATACGCAGCAGCCGTTGCCACTTCCCACAGATCATCAGCGCAATTGTGCAGAGACCTTCATAGGGTAAGTTTCCTGATTACCCCGCCAATGTATGCCAGATTCCGATCCCCGAAGTCCCCGTCTTAAGCAGTTTTCCGGCTGGTCTAGTCGGAATCCGTGGATGTCGCTTCTTTCATTGGCTACTGTTTATCAGTTTCATGATCTGATGGGTGCCTTTCGTTTGTTTTTTAAGGCTCTGGTTGCAAGAAATAGAGCCAAATGGCGTCCCATGGAAATTGACAGCGCTAATTCCAATGCTTCTGACCCTGATAATCCTAGATTTTTCCATTAACGGTATGC

mRNA sequence

ATTTTGGTCCGTAAAACCCAATTGGAAAAGGCTTTCAAATTAGAGAACAGTGCGAATCACAGGGCAATTCAAGGATACGCAGCAGCCGTTGCCACTTCCCACAGATCATCAGCGCAATTGTGCAGAGACCTTCATAGGGCTCTGGTTGCAAGAAATAGAGCCAAATGGCGTCCCATGGAAATTGACAGCGCTAATTCCAATGCTTCTGACCCTGATAATCCTAGATTTTTCCATTAACGGTATGC

Coding sequence (CDS)

ATTTTGGTCCGTAAAACCCAATTGGAAAAGGCTTTCAAATTAGAGAACAGTGCGAATCACAGGGCAATTCAAGGATACGCAGCAGCCGTTGCCACTTCCCACAGATCATCAGCGCAATTGTGCAGAGACCTTCATAGGGCTCTGGTTGCAAGAAATAGAGCCAAATGGCGTCCCATGGAAATTGACAGCGCTAATTCCAATGCTTCTGACCCTGATAATCCTAGATTTTTCCATTAA

Protein sequence

ILVRKTQLEKAFKLENSANHRAIQGYAAAVATSHRSSAQLCRDLHRALVARNRAKWRPMEIDSANSNASDPDNPRFFH

Homology

[Close]

BLAST of Carg25418 vs. NCBI nr
Match: KAG7022115.1 (hypothetical protein SDJN02_15844, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 155.6 bits (392), Expect = 1.7e-34
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0


Query: 1  ILVRKTQLEKAFKLENSANHRAIQGYAAAVATSHRSSAQLCRDLHRALVARNRAKWRPME 60
          ILVRKTQLEKAFKLENSANHRAIQGYAAAVATSHRSSAQLCRDLHRALVARNRAKWRPME
Sbjct: 1  ILVRKTQLEKAFKLENSANHRAIQGYAAAVATSHRSSAQLCRDLHRALVARNRAKWRPME 60

Query: 61 IDSANSNASDPDNPRFFH 79
          IDSANSNASDPDNPRFFH
Sbjct: 61 IDSANSNASDPDNPRFFH 78

[Close]

BLAST of Carg25418 vs. NCBI nr
Match: KAG6588218.1 (Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.7 bits (213), Expect = 9.9e-14
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 13  KLENSANHRAIQGYAAAVATSHRSSAQLCRDLHRALVARNRAKWRPMEIDSANSNASDPD 72
           KLE+ +   AIQGYAAAVATSHRSSAQLCRDLHRALVA+  +    MEIDSANSNASDPD
Sbjct: 178 KLESIS--EAIQGYAAAVATSHRSSAQLCRDLHRALVAQMAS----MEIDSANSNASDPD 235

Query: 73  NPRF 77
           NPRF
Sbjct: 238 NPRF 235

The following BLAST results are available for this feature:

BLAST of Carg25418 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022115.1	1.7e-34	100.00	hypothetical protein SDJN02_15844, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6588218.1	9.9e-14	78.13	Signal recognition particle subunit SRP68, partial [Cucurbita argyrosperma subsp...	[more]

BLAST of Carg25418 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25418 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25418 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..78

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25418-RA	Carg25418-RA	mRNA