Carg25408 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25408
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	TLC domain-containing protein
Location	Carg_Chr18: 3730253 .. 3732338 (+)
RNA-Seq Expression	Carg25408
Synteny	Carg25408

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTCATATTTGGTCAAGAAGGGATAACAACATGGAGTGAGGGAGCAAATAGTTTATTCAGTCCAAGATACCGCAATCTGCCGATTGTTATGTAGCCAAACAAAACAATGGCAATGTCTTTGAAGACTGTAATGGCTATTAAATCTTACCAAAGTCAAGCTGATGCATTGGTAAAGAACTACTTATTAGCGGACCGTTTTATCCCGTACACCTCTGTTCTTGGAGGCATGCTTGCTTGTAAATTGGTATGTATCACCTTTTAGCTCATGCTAGATATTAGGACAAAATGCTGCTTCTCTTCAATTAGGACACATTAAAAATTTTGGGTTTCCTCGTGCAGGTATATGATCTTACTCAATTAGTTAGCAATTTTTACTTCAAGAGTTATCTGGGTCTTACGAAAATTCAACGAGTCGAGTGGAATAACCGGTGAGTTTAGTATCTTTGATTGTCCATTGCCTTCAAAATCTATTCAGTGGACTGTTGTGGCCATTACTGATATTTTGAACTAAAATTGGCAGCGGTGTGTCCACTATTCATGCAATATATATCTCAATTATGTCATTGTACTTCGTTTTCTGGTCAGATCTCTTCTCTGACCAGCGTCATGCTGGCCTTCTTACCTTTCAAAGTTCGACGTTGTCTACGTTCATATTGGGGGTAAGCTTTCTATTAGCTAATCTTCAATGAATGTCAGCTTCCTTTTGAATTGTTTGATGTTTTAGATAACTGAAGTTTCTAAGCAGCATGTAAGCAGTGAACGGTGAGGAAACGTGCCAAAAGGTTGTCGGTCCAACGTTTTCTTGTGGATTGTGTAAAGGCCATATGTTAAAAGAAACTAAGTCCCAATGTTAACCACCCTATGTTAGTGATTAGTAGTTGCTTTCATCTATTGAGGTGTGTATTAAGTTATCCAAAATGTTCTTCAAAGCTAAGAACTCATCAATGGATGAAATGGGGGTGGGTTGCAATAATGTTAGTAAGATAGAGGCAGCCTGAAAGGAGGTGCCATTAGCAAAACTCGGTCCTTGCGATCCAGCTCAACCATGCTATTTAATATAGCATTAGCAAGGCAATGCAAACACATCGCAAAACAATGATTCACGACGTGTTGGGAAATGAAACGAGGATGATATTGGATCTTCGCTTCAACATTGTTCGTTTTAATCAAAAAGTTGAACTTTATCTGTATTATACTTAGTTGAATGAGGGAACCTCTATAATCCAACATGACATGGCCATATTTGGACAGACATTTGTGACATGAGAGTTTGGTGGTCGTGCCCACCAATGTTTGATTTTCGGTTTCTGATTTGAGAATAACGTCTACGATGGCAGACTTTTCGAGTCATTTGAGCTTCTATTCTGTTTTCCTTGAATTTTTACTGAACATTAACTAAAATTCTAATCATATACCCTTTTCCAGATTTCGGTTGGATACTTTTTGGCAGATCTCGGATTGATCATTTGGCTGTATCCGTCTTTAGGCGGGATGGAATATGTAAGTACCTTCGCTGCTGATAGCGCTTCAAATTTGACAAGAGTCGTGCATAATTACGAAACTTCGATGATAGGTTGTCCACCACTCTCTTTCCGGGCTAGCAGTAGCATATTCTGTTTTTTCTGGAGAAGGGCAACTCTACACATATATGGTTCTCATTTCAGAGATTACAACTCCTGAGATTAATATGAGATGGTAGGCTTTCGTTATGATATTGATTCTTAATTTTATAAGTTCTTCCTCTGAATTCTTTCATATTTTGTGAAGGTATCTTGACACAGCTGGTATGAAGAGATCCTGTGCATATCTGATTAATGGCTTTGTAATATTCTTTGCATGGCTGGTGAGTTAATGGTCTGAAGGTCATCTTGCCTGTTTTTTTATATATAAAATGGCGTAAACACGACAGTCAATAGCTCGACGACATGCTAAAAGATCCCAAAGAATTGGATTTAACATAACTGAACATGAACTACCACAGCATATAGTATGTAATAGCCCAAGTCCACCGCCAGCAAATATTGTCCTCTTTGGGTTTTTCCTTTTGGGCTTTCCCTCAAGGTTTTTAAAACGCGTCTACTAGGG

mRNA sequence

GCTTCATATTTGGTCAAGAAGGGATAACAACATGGAGTGAGGGAGCAAATAGTTTATTCAGTCCAAGATACCGCAATCTGCCGATTGTTATGTAGCCAAACAAAACAATGGCAATGTCTTTGAAGACTGTAATGGCTATTAAATCTTACCAAAGTCAAGCTGATGCATTGGTAAAGAACTACTTATTAGCGGACCGTTTTATCCCGTACACCTCTGTTCTTGGAGGCATGCTTGCTTGTAAATTGGTATATGATCTTACTCAATTAGTTAGCAATTTTTACTTCAAGAGTTATCTGGGTCTTACGAAAATTCAACGAGTCGAGTGGAATAACCGCGGTGTGTCCACTATTCATGCAATATATATCTCAATTATGTCATTGTACTTCGTTTTCTGGTCAGATCTCTTCTCTGACCAGCGTCATGCTGGCCTTCTTACCTTTCAAAGTTCGACGTTGTCTACGTTCATATTGGGGATTTCGGTTGGATACTTTTTGGCAGATCTCGGATTGATCATTTGGCTGTATCCGTCTTTAGGCGGGATGGAATATGTTGTCCACCACTCTCTTTCCGGGCTAGCAGTAGCATATTCTGTTTTTTCTGGAGAAGGGCAACTCTACACATATATGGTTCTCATTTCAGAGATTACAACTCCTGAGATTAATATGAGATGGTATCTTGACACAGCTGGTATGAAGAGATCCTGTGCATATCTGATTAATGGCTTTGTAATATTCTTTGCATGGCTGGTGAGTTAATGGTCTGAAGGTCATCTTGCCTGTTTTTTTATATATAAAATGGCGTAAACACGACAGTCAATAGCTCGACGACATGCTAAAAGATCCCAAAGAATTGGATTTAACATAACTGAACATGAACTACCACAGCATATAGTATGTAATAGCCCAAGTCCACCGCCAGCAAATATTGTCCTCTTTGGGTTTTTCCTTTTGGGCTTTCCCTCAAGGTTTTTAAAACGCGTCTACTAGGG

Coding sequence (CDS)

ATGGCAATGTCTTTGAAGACTGTAATGGCTATTAAATCTTACCAAAGTCAAGCTGATGCATTGGTAAAGAACTACTTATTAGCGGACCGTTTTATCCCGTACACCTCTGTTCTTGGAGGCATGCTTGCTTGTAAATTGGTATATGATCTTACTCAATTAGTTAGCAATTTTTACTTCAAGAGTTATCTGGGTCTTACGAAAATTCAACGAGTCGAGTGGAATAACCGCGGTGTGTCCACTATTCATGCAATATATATCTCAATTATGTCATTGTACTTCGTTTTCTGGTCAGATCTCTTCTCTGACCAGCGTCATGCTGGCCTTCTTACCTTTCAAAGTTCGACGTTGTCTACGTTCATATTGGGGATTTCGGTTGGATACTTTTTGGCAGATCTCGGATTGATCATTTGGCTGTATCCGTCTTTAGGCGGGATGGAATATGTTGTCCACCACTCTCTTTCCGGGCTAGCAGTAGCATATTCTGTTTTTTCTGGAGAAGGGCAACTCTACACATATATGGTTCTCATTTCAGAGATTACAACTCCTGAGATTAATATGAGATGGTATCTTGACACAGCTGGTATGAAGAGATCCTGTGCATATCTGATTAATGGCTTTGTAATATTCTTTGCATGGCTGGTGAGTTAA

Protein sequence

MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFKSYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFILGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEITTPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS

Homology

[Close]

BLAST of Carg25408 vs. NCBI nr
Match: KAG7012593.1 (Transmembrane protein 56-B [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 425.2 bits (1092), Expect = 3.3e-115
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 215

[Close]

BLAST of Carg25408 vs. NCBI nr
Match: KAG6573446.1 (TLC domain-containing protein 4-B, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 424.1 bits (1089), Expect = 7.2e-115
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLV+
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVA 215

[Close]

BLAST of Carg25408 vs. NCBI nr
Match: XP_023543000.1 (transmembrane protein 56 [Cucurbita pepo subsp. pepo] >XP_023543001.1 transmembrane protein 56 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 421.8 bits (1083), Expect = 3.6e-114
Identity = 213/215 (99.07%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSS LSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSMLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLV+
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVA 215

[Close]

BLAST of Carg25408 vs. NCBI nr
Match: XP_022954719.1 (transmembrane protein 56 [Cucurbita moschata] >XP_022954720.1 transmembrane protein 56 [Cucurbita moschata] >XP_022954722.1 transmembrane protein 56 [Cucurbita moschata])

HSP 1 Score: 420.2 bits (1079), Expect = 1.0e-113
Identity = 212/215 (98.60%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQ DALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQTDALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHA LLTFQSSTLSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHASLLTFQSSTLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLV+
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVA 215

[Close]

BLAST of Carg25408 vs. NCBI nr
Match: XP_022994862.1 (transmembrane protein 56-like [Cucurbita maxima] >XP_022994863.1 transmembrane protein 56-like [Cucurbita maxima] >XP_022994864.1 transmembrane protein 56-like [Cucurbita maxima])

HSP 1 Score: 417.9 bits (1073), Expect = 5.2e-113
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLII+LYPSLGGMEYVVHHSLSGLAVAYSV SGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIIFLYPSLGGMEYVVHHSLSGLAVAYSVLSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLV+
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVA 215

[Close]

BLAST of Carg25408 vs. ExPASy Swiss-Prot
Match: Q6PGS5 (TLC domain-containing protein 4-B OS=Xenopus laevis OX=8355 GN=tlcd4-b PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 9.2e-12
Identity = 46/153 (30.07%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 65  LTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFILGIS 124
           L+  Q++EWN+R VS+ HA+ +    LY + + D  +     G        +    + ++
Sbjct: 41  LSARQKIEWNSRTVSSFHALVVGCFCLYILVYDDAVNADPVWG-----DPFMVKLNVAVT 100

Query: 125 VGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQL--YTYMVLISEITTP 184
            GY ++DL LII+ +  +G   +V HH L+ L   Y V  GEG L  +    LI+E +TP
Sbjct: 101 SGYLISDLLLIIYYWKEIGDKYFVTHH-LAALYACYYVL-GEGMLPYFGNFRLIAEFSTP 160

Query: 185 EINMRWYLDTAG-MKRSCAYLINGFVIFFAWLV 215
            +N RW+ +  G  K S   ++NG ++  ++ +
Sbjct: 161 FVNQRWFFEVLGYSKYSLPNMVNGVLMTISFFI 186

[Close]

BLAST of Carg25408 vs. ExPASy Swiss-Prot
Match: Q550S9 (TLC domain-containing protein 4 B OS=Dictyostelium discoideum OX=44689 GN=tlcd4b PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.9e-11
Identity = 43/165 (26.06%), Postives = 86/165 (52.12%), Query Frame = 0


Query: 50  LTQLVSNFYFKSYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLL 109
           L +++   + K+ +G  + +R+EW NR +ST++AI  S +S+Y +++++   +   +   
Sbjct: 26  LPKIIEIIFKKNNIGFYERKRIEWPNRIISTVNAIVTSALSIYCLYYNEWIVNSLRS--- 85

Query: 110 TFQSSTLSTFILGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQL 169
              +S +S FI      YF+ D  +  +    L     ++HH+++ L+  +    G    
Sbjct: 86  ---TSEMSYFIFKFITYYFIYDFIISSYYSKYLFTWGNLLHHTIALLSFTFLGGKGLAHH 145

Query: 170 YTYMVLISEITTPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLV 215
                  +EITTP IN+R++L    +K    Y+ING +IF  +++
Sbjct: 146 LLLSYTFTEITTPLINLRFFLLDLNLKNHPLYVINGLLIFVGFVL 184

[Close]

BLAST of Carg25408 vs. ExPASy Swiss-Prot
Match: Q5XIY2 (TLC domain-containing protein 4-B OS=Danio rerio OX=7955 GN=tlcd4b PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-10
Identity = 47/179 (26.26%), Postives = 89/179 (49.72%), Query Frame = 0


Query: 37  VLGGMLACKLVYD-LTQLVSNFYFKSYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVF 96
           V G  +  +L +  ++ ++S+ + + Y  L   +  +WN+R VST+HA+ + +  LY ++
Sbjct: 9   VAGSFVGFQLFFSCVSPVLSSNFTQGYGKLPPNKLNDWNSRLVSTVHALIVGLFCLYILW 68

Query: 97  WSDLFSDQRHAGLLTFQSSTLSTFILGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSG 156
           + D  ++    G        L    + I+ GY   DL L+   + ++G + +V HH  + 
Sbjct: 69  YDDAVNEDPVWG-----DPNLVKLNVAITCGYLFYDLLLLACNWSTMGDVFFVCHHLAAL 128

Query: 157 LAVAYSVFSGEGQLYTYMVLISEITTPEINMRWYLDTAGMKRSCAYLI-NGF---VIFF 211
            A  Y +  G    +    LISE++TP +N RW+ +     R+   ++ NG    V+FF
Sbjct: 129 YAYGYVLTRGVLPYFANFRLISELSTPFVNQRWFFEALAYPRTHQLVVANGIAMAVVFF 182

[Close]

BLAST of Carg25408 vs. ExPASy Swiss-Prot
Match: Q6GLX2 (TLC domain-containing protein 4-A OS=Xenopus laevis OX=8355 GN=tlcd4-a PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.6e-09
Identity = 49/188 (26.06%), Postives = 85/188 (45.21%), Query Frame = 0


Query: 29  DRFIPYTSVLGGMLACKLVYD-LTQLVSNFYFKSYLGLTKIQRVEWNNRGVSTIHAIYIS 88
           D  I Y  V G  L  +L++  ++  +   Y  +Y  L+  ++ EW++R VST HA+ + 
Sbjct: 3   DVLISYCVVTGSFLGFQLLFSAISPRLFTKYSSTYRQLSFGKQCEWDSRFVSTNHALIVG 62

Query: 89  IMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFILGISVGYFLADLGLIIWLYPSLGGMEY 148
              LY + + D  +     G   +    ++     I+ GY + DL L+   +  +     
Sbjct: 63  SACLYILAYDDAVNADPIWGDPFWVKMNVA-----ITCGYLVQDLLLLARFWKVMRDPYM 122

Query: 149 VVHHSLSGLAVAYSVFSGEGQLYTYMVLISEITTPEINMRWYLDTAGMKRSC-AYLINGF 208
           V HH     +  Y +  G    +    LISE++TP +N RW+ D  G  RS    L+NG 
Sbjct: 123 VCHHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGL 182

Query: 209 VIFFAWLV 215
            +   + +
Sbjct: 183 AMALVFFI 185

[Close]

BLAST of Carg25408 vs. ExPASy Swiss-Prot
Match: Q6P4N1 (TLC domain-containing protein 4 OS=Xenopus tropicalis OX=8364 GN=tlcd4 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 48/186 (25.81%), Postives = 84/186 (45.16%), Query Frame = 0


Query: 31  FIPYTSVLGGMLACKLVYD-LTQLVSNFYFKSYLGLTKIQRVEWNNRGVSTIHAIYISIM 90
           FI Y  V G  L  +L++  ++      Y  +Y  L+  ++ EW++R VST HA+ +   
Sbjct: 6   FISYCVVTGSFLGFQLLFSIISPRTFTKYSSTYRQLSFGKQCEWDSRCVSTTHALVVGSG 65

Query: 91  SLYFVFWSDLFSDQRHAGLLTFQSSTLSTFILGISVGYFLADLGLIIWLYPSLGGMEYVV 150
            LY + + +  +     G   +    ++     I+ GY + DL L+   +  +     V 
Sbjct: 66  CLYILAYDEAVNADPIWGDPFWVKMNVA-----ITCGYLVHDLLLLARFWKVMRDPYMVC 125

Query: 151 HHSLSGLAVAYSVFSGEGQLYTYMVLISEITTPEINMRWYLDTAGMKRSC-AYLINGFVI 210
           HH     +  Y +  G    +    LISE++TP +N RW+ D  G  RS    L+NG  +
Sbjct: 126 HHLAVFYSYGYVLNRGVLPYFANFRLISELSTPFVNQRWFFDVIGKPRSSWPVLLNGLAM 185

Query: 211 FFAWLV 215
              + +
Sbjct: 186 ALVFFI 186

[Close]

BLAST of Carg25408 vs. ExPASy TrEMBL
Match: A0A6J1GTT4 (transmembrane protein 56 OS=Cucurbita moschata OX=3662 GN=LOC111456894 PE=4 SV=1)

HSP 1 Score: 420.2 bits (1079), Expect = 5.1e-114
Identity = 212/215 (98.60%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQ DALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQTDALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHA LLTFQSSTLSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHASLLTFQSSTLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLV+
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVA 215

[Close]

BLAST of Carg25408 vs. ExPASy TrEMBL
Match: A0A6J1K6A0 (transmembrane protein 56-like OS=Cucurbita maxima OX=3661 GN=LOC111490462 PE=4 SV=1)

HSP 1 Score: 417.9 bits (1073), Expect = 2.5e-113
Identity = 212/215 (98.60%), Postives = 214/215 (99.53%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLII+LYPSLGGMEYVVHHSLSGLAVAYSV SGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIIFLYPSLGGMEYVVHHSLSGLAVAYSVLSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLV+
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVA 215

[Close]

BLAST of Carg25408 vs. ExPASy TrEMBL
Match: A0A1S4E2B6 (transmembrane protein 56-like OS=Cucumis melo OX=3656 GN=LOC103498304 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 8.1e-112
Identity = 204/215 (94.88%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQADALVKNYLLAD F+P+TSVLGGMLACKL+YDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADHFVPFTSVLGGMLACKLIYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRG+ST HAIYISIMSLYFVFWSDLFSDQRHAGL+TFQSSTLSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGMSTFHAIYISIMSLYFVFWSDLFSDQRHAGLVTFQSSTLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLI+WLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLING VIFFAWL++
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGIVIFFAWLIA 215

[Close]

BLAST of Carg25408 vs. ExPASy TrEMBL
Match: A0A5D3E1H6 (Transmembrane protein 56-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00960 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 8.1e-112
Identity = 204/215 (94.88%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQADALVKNYLLAD F+P+TSVLGGMLACKL+YDLTQLVSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADHFVPFTSVLGGMLACKLIYDLTQLVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRG+ST HAIYISIMSLYFVFWSDLFSDQRHAGL+TFQSSTLSTFI
Sbjct: 61  SYLGLTKIQRVEWNNRGMSTFHAIYISIMSLYFVFWSDLFSDQRHAGLVTFQSSTLSTFI 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLI+WLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLING VIFFAWL++
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGIVIFFAWLIA 215

[Close]

BLAST of Carg25408 vs. ExPASy TrEMBL
Match: A0A6J1KGK7 (transmembrane protein 56-like OS=Cucurbita maxima OX=3661 GN=LOC111495071 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.8e-111
Identity = 205/215 (95.35%), Postives = 213/215 (99.07%), Query Frame = 0


Query: 1   MAMSLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFK 60
           MAMSLKTVMAIKSYQSQADALV+NYLLADR IPYTSVLGG+LACKLVYDLTQ+VSNFYFK
Sbjct: 1   MAMSLKTVMAIKSYQSQADALVENYLLADRLIPYTSVLGGILACKLVYDLTQVVSNFYFK 60

Query: 61  SYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFI 120
           SYLGLTKIQRVEWNNRG+STIHAIYISIMSLYFVFWSDLFSDQRHAGL+TFQSSTLSTF+
Sbjct: 61  SYLGLTKIQRVEWNNRGMSTIHAIYISIMSLYFVFWSDLFSDQRHAGLVTFQSSTLSTFV 120

Query: 121 LGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180
           LGISVGYFLADLGLI+WLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT
Sbjct: 121 LGISVGYFLADLGLIVWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEIT 180

Query: 181 TPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           TPEINMRWYLDTAGMKRSCAYLING VIFFAWLV+
Sbjct: 181 TPEINMRWYLDTAGMKRSCAYLINGVVIFFAWLVA 215

[Close]

BLAST of Carg25408 vs. TAIR 10
Match: AT1G31300.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 322.0 bits (824), Expect = 3.6e-88
Identity = 156/212 (73.58%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 4   SLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFKSYL 63
           SL+T+ AIKSY  QA  LVKNYLLAD FIPYTSVL G+  CK+VYDL   +SN + K+Y+
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFILGI 123
            LTKIQR+EWNNRG+ST+HAI+IS MSLYFVFWSDLFSD+ H  L+ F+SS LS+  LGI
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEITTPE 183
           S+GYFLADLG+I W YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISEITTPE
Sbjct: 125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           IN+RWYLDTAGMK+S AY++NG  IF AWLV+
Sbjct: 185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVA 216

[Close]

BLAST of Carg25408 vs. TAIR 10
Match: AT1G31300.2 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 322.0 bits (824), Expect = 3.6e-88
Identity = 156/212 (73.58%), Postives = 183/212 (86.32%), Query Frame = 0


Query: 4   SLKTVMAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFKSYL 63
           SL+T+ AIKSY  QA  LVKNYLLAD FIPYTSVL G+  CK+VYDL   +SN + K+Y+
Sbjct: 5   SLQTIGAIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVVYDLCHFISNSHSKTYI 64

Query: 64  GLTKIQRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLTFQSSTLSTFILGI 123
            LTKIQR+EWNNRG+ST+HAI+IS MSLYFVFWSDLFSD+ H  L+ F+SS LS+  LGI
Sbjct: 65  ILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLGLGI 124

Query: 124 SVGYFLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEITTPE 183
           S+GYFLADLG+I W YPSLGG+EY+VHHSLSG+AVAYS+FSGEGQLYTYMVLISEITTPE
Sbjct: 125 SIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEITTPE 184

Query: 184 INMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           IN+RWYLDTAGMK+S AY++NG  IF AWLV+
Sbjct: 185 INLRWYLDTAGMKKSLAYVVNGVFIFLAWLVA 216

[Close]

BLAST of Carg25408 vs. TAIR 10
Match: AT4G19645.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 305.4 bits (781), Expect = 3.5e-83
Identity = 149/208 (71.63%), Postives = 177/208 (85.10%), Query Frame = 0


Query: 9   MAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFKSYLGLTKI 68
           M IKSYQ+QA+  V++YLLAD F+PYTSVL G+  CKLVYDLT+L S+ + KSY  LTKI
Sbjct: 1   MEIKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKI 60

Query: 69  QRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLT-FQSSTLSTFILGISVGY 128
           +R+EWNNRG+ST+HAI+IS M+LYF F+SDLFSDQR    LT F++S LSTF LG+SVGY
Sbjct: 61  KRIEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGY 120

Query: 129 FLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEITTPEINMR 188
           FLADLG+I WLYPSLGG EY++HH LSG AVAYS+FSGE QLYTYMVLISE+TTPEIN+R
Sbjct: 121 FLADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVTTPEINLR 180

Query: 189 WYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           WYLD AG+KRS AYL+NG  IFFAWL +
Sbjct: 181 WYLDIAGLKRSKAYLVNGVAIFFAWLTA 208

[Close]

BLAST of Carg25408 vs. TAIR 10
Match: AT4G19645.2 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 305.4 bits (781), Expect = 3.5e-83
Identity = 149/208 (71.63%), Postives = 177/208 (85.10%), Query Frame = 0


Query: 9   MAIKSYQSQADALVKNYLLADRFIPYTSVLGGMLACKLVYDLTQLVSNFYFKSYLGLTKI 68
           M IKSYQ+QA+  V++YLLAD F+PYTSVL G+  CKLVYDLT+L S+ + KSY  LTKI
Sbjct: 1   MEIKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKI 60

Query: 69  QRVEWNNRGVSTIHAIYISIMSLYFVFWSDLFSDQRHAGLLT-FQSSTLSTFILGISVGY 128
           +R+EWNNRG+ST+HAI+IS M+LYF F+SDLFSDQR    LT F++S LSTF LG+SVGY
Sbjct: 61  KRIEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFGLGVSVGY 120

Query: 129 FLADLGLIIWLYPSLGGMEYVVHHSLSGLAVAYSVFSGEGQLYTYMVLISEITTPEINMR 188
           FLADLG+I WLYPSLGG EY++HH LSG AVAYS+FSGE QLYTYMVLISE+TTPEIN+R
Sbjct: 121 FLADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVTTPEINLR 180

Query: 189 WYLDTAGMKRSCAYLINGFVIFFAWLVS 216
           WYLD AG+KRS AYL+NG  IFFAWL +
Sbjct: 181 WYLDIAGLKRSKAYLVNGVAIFFAWLTA 208

[Close]

BLAST of Carg25408 vs. TAIR 10
Match: AT4G10360.1 (TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein )

HSP 1 Score: 189.9 bits (481), Expect = 2.1e-48
Identity = 89/180 (49.44%), Postives = 121/180 (67.22%), Query Frame = 0


Query: 36  SVLGGMLACKLVYDLTQLVSNFYFKSYLGLTKIQRVEWNNRGVSTIHAIYISIMSLYFVF 95
           S+  G L CK+VYDLT+ +S   F  Y  L    R+EWNNRG ST HA++ S+ S+YF+ 
Sbjct: 20  SICSGALMCKIVYDLTRFISPLLFSVYGKLDSKVRMEWNNRGFSTFHAVFTSVASIYFLV 79

Query: 96  WSDLFSDQRHAGLLTFQSSTLSTFILGISVGYFLADLGLIIWLYPSLGGMEYVVHHSLSG 155
            SD F +  H   +   ++ LS  ++GIS+GYFLADL +I W +P+LGG+EYV HH LS 
Sbjct: 80  ISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWYFPTLGGIEYVFHHFLSM 139

Query: 156 LAVAYSVFSGEGQLYTYMVLISEITTPEINMRWYLDTAGMKRSCAYLINGFVIFFAWLVS 215
            A+  SV SG+ Q Y ++VL+SE TTP +N+RWYLD +G K S AY +NG  +F  WLV+
Sbjct: 140 FAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGSKAYTLNGIALFLGWLVA 199

The following BLAST results are available for this feature:

BLAST of Carg25408 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012593.1	3.3e-115	100.00	Transmembrane protein 56-B [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6573446.1	7.2e-115	99.53	TLC domain-containing protein 4-B, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023543000.1	3.6e-114	99.07	transmembrane protein 56 [Cucurbita pepo subsp. pepo] >XP_023543001.1 transmembr...	[more]
XP_022954719.1	1.0e-113	98.60	transmembrane protein 56 [Cucurbita moschata] >XP_022954720.1 transmembrane prot...	[more]
XP_022994862.1	5.2e-113	98.60	transmembrane protein 56-like [Cucurbita maxima] >XP_022994863.1 transmembrane p...	[more]

BLAST of Carg25408 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6PGS5	9.2e-12	30.07	TLC domain-containing protein 4-B OS=Xenopus laevis OX=8355 GN=tlcd4-b PE=2 SV=1	[more]
Q550S9	5.9e-11	26.06	TLC domain-containing protein 4 B OS=Dictyostelium discoideum OX=44689 GN=tlcd4b...	[more]
Q5XIY2	1.3e-10	26.26	TLC domain-containing protein 4-B OS=Danio rerio OX=7955 GN=tlcd4b PE=2 SV=1	[more]
Q6GLX2	5.6e-09	26.06	TLC domain-containing protein 4-A OS=Xenopus laevis OX=8355 GN=tlcd4-a PE=2 SV=1	[more]
Q6P4N1	1.6e-08	25.81	TLC domain-containing protein 4 OS=Xenopus tropicalis OX=8364 GN=tlcd4 PE=2 SV=1	[more]

BLAST of Carg25408 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GTT4	5.1e-114	98.60	transmembrane protein 56 OS=Cucurbita moschata OX=3662 GN=LOC111456894 PE=4 SV=1	[more]
A0A6J1K6A0	2.5e-113	98.60	transmembrane protein 56-like OS=Cucurbita maxima OX=3661 GN=LOC111490462 PE=4 S...	[more]
A0A1S4E2B6	8.1e-112	94.88	transmembrane protein 56-like OS=Cucumis melo OX=3656 GN=LOC103498304 PE=4 SV=1	[more]
A0A5D3E1H6	8.1e-112	94.88	Transmembrane protein 56-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A6J1KGK7	1.8e-111	95.35	transmembrane protein 56-like OS=Cucurbita maxima OX=3661 GN=LOC111495071 PE=4 S...	[more]

BLAST of Carg25408 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31300.1	3.6e-88	73.58	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT1G31300.2	3.6e-88	73.58	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT4G19645.1	3.5e-83	71.63	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT4G19645.2	3.5e-83	71.63	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT4G10360.1	2.1e-48	49.44	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 68..215 e-value: 0.0066 score: 9.6
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 72..214 e-value: 5.7E-21 score: 75.2
IPR006634	TRAM/LAG1/CLN8 homology domain	PROSITE	PS50922	TLC	coord: 68..215 score: 24.420504
None	No IPR available	PANTHER	PTHR13439	CT120 PROTEIN	coord: 6..215
None	No IPR available	PANTHER	PTHR13439:SF62	OS01G0768200 PROTEIN	coord: 6..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25408-RA	Carg25408-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055088	lipid homeostasis
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane