Carg25402 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25402
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	DNA-directed RNA polymerase subunit beta'
Location	Carg_Chr18: 3679987 .. 3681143 (+)
RNA-Seq Expression	Carg25402
Synteny	Carg25402

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGTATTTACCACTTGAAGGTGAGTGTTTACTTCAGGACATTGTAAAGCTCATATTCTTGGCTGAGATCAAGAATTCGAGCATGGACGCGTAAGCTTTCTCTTGCTTCCGCTATTTTTCACGCAAGGAAGCCACGAGGACTGTTCTTTTGATCATAATTAACATTATGTTTTTACTGTACTCTAGGATCATTATGTGTTATGCTTTTTGCTGCCAGTTATAAGTGTAATTTGGTTTAAAGTACTCGTTTTTCGTAGTTCGACATGTAATTTTGGTCTAGGATTCAAATGTATCTCAGTCAGTTGAGCTTTTAGCCAGACTATTACCCAAATTCAGGAGGGTAGAAAACTGTAATGCATGCTCTGGGAATTTCCCATTTTGTGATTCTTTTGGTGATGGTAACTGTATAAACTCAACAGGCAAGTTTTGTGTTTTAAATTATTAGAATGGTTGCCTTATAATAAACCAAAATTTACTCTGTTCTGTTCATATATATCTGAAAGTAATATTTTTTATATACTTTTAAGTTATGTCTTTCTGGATTATGCCTAGTTTTAATATTTGATCCTTATGACTGAATGAAATTCAATGCCTCTATGATTTGTTGGCTTTTTTTCTTTTTTTTTTTTTCTTGTTATTTGGGAATAGAATTTGTAATGTGTTAGGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTAAAGAGGGAAGATTTTGAAATACTCTGCTTGGCAAACGGGTCGATTATTCAAAACATTCTGTGATTGTTGTAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG

mRNA sequence

ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG

Coding sequence (CDS)

ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG

Protein sequence

MCNLGSPSTEAVRSIPIPWNIRHHEHYTVDGMLHLLNLGTGEKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLRKVL

Homology

[Close]

BLAST of Carg25402 vs. NCBI nr
Match: KAG7012587.1 (DNA-directed RNA polymerase subunit beta', partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MCNLGSPSTEAVRSIPIPWNIRHHEHYTVDGMLHLLNLGTGEKLVQEVVGILLDNEIIGQ 60
           MCNLGSPSTEAVRSIPIPWNIRHHEHYTVDGMLHLLNLGTGEKLVQEVVGILLDNEIIGQ
Sbjct: 1   MCNLGSPSTEAVRSIPIPWNIRHHEHYTVDGMLHLLNLGTGEKLVQEVVGILLDNEIIGQ 60

Query: 61  PMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELL 120
           PMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELL
Sbjct: 61  PMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELL 120

Query: 121 RVKFGKKNPLYGKYLRKVL 140
           RVKFGKKNPLYGKYLRKVL
Sbjct: 121 RVKFGKKNPLYGKYLRKVL 139

[Close]

BLAST of Carg25402 vs. NCBI nr
Match: CAB4289788.1 (unnamed protein product [Prunus armeniaca] >CAB4299885.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 98.6 bits (244), Expect = 4.5e-17
Identity = 61/122 (50.00%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 62  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 121

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 139
               SLSLH+CGLP EI   L+                QT ELLRVKFGKK+ LYGKY  
Sbjct: 122 VVGPSLSLHRCGLPREIAIELF----------------QTFELLRVKFGKKSRLYGKYFM 167

[Close]

BLAST of Carg25402 vs. NCBI nr
Match: XP_040955121.1 (DNA-directed RNA polymerase subunit beta'-like [Gossypium hirsutum])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 57/125 (45.60%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V   LDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 78  EKLVQEAVDTFLDNGICGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 137

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPM---LLNNRAFPDILLQTSELLRVKFGKKNPLYGK 139
               SLSLH+CGLP EI   L+   +   L+     P+I      + +VKFGKK  LYGK
Sbjct: 138 VVGPSLSLHRCGLPREIAIELFQAFVIRGLIRQHLAPNI-----GVTKVKFGKKGRLYGK 197

[Close]

BLAST of Carg25402 vs. NCBI nr
Match: VVW91431.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-14
Identity = 56/122 (45.90%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 4   EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 63

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 139
               SLSLHQCGLP EI   L+     +        L     L + K  +KNPLYGKY +
Sbjct: 64  VVGPSLSLHQCGLPREIAIELF--QTFVIRGLIRQHLASNIGLAKSKIREKNPLYGKYFK 123

[Close]

BLAST of Carg25402 vs. NCBI nr
Match: VVW90806.1 (unnamed protein product, partial [Nymphaea colorata])

HSP 1 Score: 87.8 bits (216), Expect = 8.0e-14
Identity = 55/121 (45.45%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 43  KLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS---------------------- 102
           KLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                       
Sbjct: 5   KLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIV 64

Query: 103 ---SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLRK 139
              SLSLHQCGLP EI   L+     +        L     L + K  +KNPLYGKY +K
Sbjct: 65  VGPSLSLHQCGLPREIAIELF--QTFVIRGLIRQHLASNIGLAKSKIREKNPLYGKYFKK 123

[Close]

BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: A8W3B5 (DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata OX=476139 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSD++EG                      
Sbjct: 332 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIEGKEGRFRETLLGKRVDYSGRSVI 391

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+  P ++ +      L     + + K  +K P+  + L+
Sbjct: 392 VVGPSLSLHQCGLPREIAIELF-QPFVIRD-LIKQHLASNIGVAKSKIREKEPIIWEILQ 451

[Close]

BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: Q6EW57 (DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba OX=34301 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13
Identity = 51/123 (41.46%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     +        L     L + K  +K P+  + L+
Sbjct: 385 VVGPSLSLHQCGLPREIAIELF--QTFVIRGLIRQHLASNIGLAKSKIREKEPIVWEILQ 444

[Close]

BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: Q589B9 (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia OX=37657 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13
Identity = 50/123 (40.65%), Postives = 61/123 (49.59%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 328 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 387

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLH+CGLP EI   L+     +        L     + + K  +K P+  K L+
Sbjct: 388 VVGPSLSLHRCGLPREIAIELF--QTFIIRGLIRQHLASNIGVAKSKIREKEPIIWKILQ 447

[Close]

BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: A6MMJ8 (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes OX=145284 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13
Identity = 49/123 (39.84%), Postives = 62/123 (50.41%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPM+D HNKVYKSFSDV+EG                      
Sbjct: 328 EKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 387

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 140
               SLSLHQCGLP EI   L+     L +      +     + + K  +K P+  + L+
Sbjct: 388 VVGPSLSLHQCGLPREIAIELF--QTFLIHGLIKQHVASNIGIAKSKIREKEPIVWEILQ 447

[Close]

BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: A0ZZ26 (DNA-directed RNA polymerase subunit beta' OS=Gossypium barbadense OX=3634 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13
Identity = 52/126 (41.27%), Postives = 65/126 (51.59%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGRRVDYSGRSVI 384

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPM---LLNNRAFPDILLQTSELLRVKFGKKNPLYGK 140
               SLSLH+CGLP EI   L+   +   L+     P+I +  S     K  +K P+  +
Sbjct: 385 VVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLAPNIGVAES-----KIREKGPIVWE 444

[Close]

BLAST of Carg25402 vs. ExPASy TrEMBL
Match: A0A6J5VV95 (DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49370 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17
Identity = 61/122 (50.00%), Postives = 66/122 (54.10%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 62  EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 121

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 139
               SLSLH+CGLP EI   L+                QT ELLRVKFGKK+ LYGKY  
Sbjct: 122 VVGPSLSLHRCGLPREIAIELF----------------QTFELLRVKFGKKSRLYGKYFM 167

[Close]

BLAST of Carg25402 vs. ExPASy TrEMBL
Match: A0A5K1HQG7 (DNA-directed RNA polymerase subunit (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30932 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14
Identity = 56/122 (45.90%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 4   EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 63

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLR 139
               SLSLHQCGLP EI   L+     +        L     L + K  +KNPLYGKY +
Sbjct: 64  VVGPSLSLHQCGLPREIAIELF--QTFVIRGLIRQHLASNIGLAKSKIREKNPLYGKYFK 123

[Close]

BLAST of Carg25402 vs. ExPASy TrEMBL
Match: A0A5K1HS53 (DNA-directed RNA polymerase subunit (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30763 PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 3.9e-14
Identity = 55/121 (45.45%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 43  KLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS---------------------- 102
           KLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                       
Sbjct: 5   KLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIV 64

Query: 103 ---SLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLRK 139
              SLSLHQCGLP EI   L+     +        L     L + K  +KNPLYGKY +K
Sbjct: 65  VGPSLSLHQCGLPREIAIELF--QTFVIRGLIRQHLASNIGLAKSKIREKNPLYGKYFKK 123

[Close]

BLAST of Carg25402 vs. ExPASy TrEMBL
Match: A0A452YM89 (DNA-directed RNA polymerase subunit OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14
Identity = 56/125 (44.80%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 101
           EKLVQEVV  LLD+   GQP RD HNKVYKS SDV+EG                      
Sbjct: 78  EKLVQEVVDTLLDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVI 137

Query: 102 ----SLSLHQCGLPSEIKEVLYGHPM---LLNNRAFPDILLQTSELLRVKFGKKNPLYGK 139
               SLSLHQCGLP EI   L+   +   L+  RA  ++      + + K GKKNPLYGK
Sbjct: 138 VVGPSLSLHQCGLPLEIAIKLFQLFVIRDLITKRATSNV-----RIAKRKIGKKNPLYGK 197

[Close]

BLAST of Carg25402 vs. ExPASy TrEMBL
Match: W1P4N9 (DNA-directed RNA polymerase subunit (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s00390p00014170 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 51/97 (52.58%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHP 101
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG              +E L G  
Sbjct: 176 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKE---------GRFRETLLGKR 235

Query: 102 MLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLRKV 139
           +  + R+         ELLRVKF KK+ LYGKY RK+
Sbjct: 236 VDYSGRSV------IVELLRVKFEKKSRLYGKYFRKL 257

[Close]

BLAST of Carg25402 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 74.3 bits (181), Expect = 8.5e-14
Identity = 43/82 (52.44%), Postives = 46/82 (56.10%), Query Frame = 0


Query: 42  EKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGS--------------------- 99
           EKLVQE V  LLDN I GQPMRD HNKVYKSFSDV+EG                      
Sbjct: 325 EKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 384

The following BLAST results are available for this feature:

BLAST of Carg25402 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7012587.1	2.4e-74	100.00	DNA-directed RNA polymerase subunit beta', partial [Cucurbita argyrosperma subsp...	[more]
CAB4289788.1	4.5e-17	50.00	unnamed protein product [Prunus armeniaca] >CAB4299885.1 unnamed protein product...	[more]
XP_040955121.1	1.6e-14	45.60	DNA-directed RNA polymerase subunit beta'-like [Gossypium hirsutum]	[more]
VVW91431.1	2.1e-14	45.90	unnamed protein product, partial [Nymphaea colorata]	[more]
VVW90806.1	8.0e-14	45.45	unnamed protein product, partial [Nymphaea colorata]	[more]

BLAST of Carg25402 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A8W3B5	1.1e-13	40.65	DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata OX=476139 GN=rpoC1...	[more]
Q6EW57	1.4e-13	41.46	DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba OX=34301 GN=rpoC1 PE=...	[more]
Q589B9	2.4e-13	40.65	DNA-directed RNA polymerase subunit beta' OS=Silene latifolia OX=37657 GN=rpoC1 ...	[more]
A6MMJ8	3.1e-13	39.84	DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes OX=145284 GN...	[more]
A0ZZ26	3.1e-13	41.27	DNA-directed RNA polymerase subunit beta' OS=Gossypium barbadense OX=3634 GN=rpo...	[more]

BLAST of Carg25402 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J5VV95	2.2e-17	50.00	DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS...	[more]
A0A5K1HQG7	1.0e-14	45.90	DNA-directed RNA polymerase subunit (Fragment) OS=Nymphaea colorata OX=210225 GN...	[more]
A0A5K1HS53	3.9e-14	45.45	DNA-directed RNA polymerase subunit (Fragment) OS=Nymphaea colorata OX=210225 GN...	[more]
A0A452YM89	6.6e-14	44.80	DNA-directed RNA polymerase subunit OS=Aegilops tauschii subsp. strangulata OX=2...	[more]
W1P4N9	1.1e-13	52.58	DNA-directed RNA polymerase subunit (Fragment) OS=Amborella trichopoda OX=13333 ...	[more]

BLAST of Carg25402 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	8.5e-14	52.44	DNA-directed RNA polymerase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 42..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25402-RA	Carg25402-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0016740	transferase activity