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Carg25402 (gene) Silver-seed gourd (SMH-JMG-627) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGTATTTACCACTTGAAGGTGAGTGTTTACTTCAGGACATTGTAAAGCTCATATTCTTGGCTGAGATCAAGAATTCGAGCATGGACGCGTAAGCTTTCTCTTGCTTCCGCTATTTTTCACGCAAGGAAGCCACGAGGACTGTTCTTTTGATCATAATTAACATTATGTTTTTACTGTACTCTAGGATCATTATGTGTTATGCTTTTTGCTGCCAGTTATAAGTGTAATTTGGTTTAAAGTACTCGTTTTTCGTAGTTCGACATGTAATTTTGGTCTAGGATTCAAATGTATCTCAGTCAGTTGAGCTTTTAGCCAGACTATTACCCAAATTCAGGAGGGTAGAAAACTGTAATGCATGCTCTGGGAATTTCCCATTTTGTGATTCTTTTGGTGATGGTAACTGTATAAACTCAACAGGCAAGTTTTGTGTTTTAAATTATTAGAATGGTTGCCTTATAATAAACCAAAATTTACTCTGTTCTGTTCATATATATCTGAAAGTAATATTTTTTATATACTTTTAAGTTATGTCTTTCTGGATTATGCCTAGTTTTAATATTTGATCCTTATGACTGAATGAAATTCAATGCCTCTATGATTTGTTGGCTTTTTTTCTTTTTTTTTTTTTCTTGTTATTTGGGAATAGAATTTGTAATGTGTTAGGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTAAAGAGGGAAGATTTTGAAATACTCTGCTTGGCAAACGGGTCGATTATTCAAAACATTCTGTGATTGTTGTAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG ATGTGTAACCTGGGTAGTCCAAGTACTGAAGCAGTGAGAAGTATACCAATCCCGTGGAACATACGTCATCACGAACATTACACTGTCGATGGAATGCTTCACCTGCTAAACCTAGGAACTGGAGAGAAATTGGTACAAGAAGTCGTGGGTATACTTCTGGATAATGAAATTATTGGACAACCAATGAGGGATGACCATAATAAGGTTTACAAGTCGTTCTCCGATGTAGTTGAAGGTTCCTCGCTTTCATTACATCAATGTGGATTACCTAGCGAAATTAAGGAAGTTTTGTATGGACATCCTATGTTACTAAACAATAGAGCTTTTCCAGATATTTTGCTTCAAACATCGGAGTTGTTAAGAGTAAAATTCGGGAAGAAGAACCCCTTATATGGAAAATACTTAAGGAAAGTTTTGTAG MCNLGSPSTEAVRSIPIPWNIRHHEHYTVDGMLHLLNLGTGEKLVQEVVGILLDNEIIGQPMRDDHNKVYKSFSDVVEGSSLSLHQCGLPSEIKEVLYGHPMLLNNRAFPDILLQTSELLRVKFGKKNPLYGKYLRKVL Homology
BLAST of Carg25402 vs. NCBI nr
Match: KAG7012587.1 (DNA-directed RNA polymerase subunit beta', partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of Carg25402 vs. NCBI nr
Match: CAB4289788.1 (unnamed protein product [Prunus armeniaca] >CAB4299885.1 unnamed protein product [Prunus armeniaca]) HSP 1 Score: 98.6 bits (244), Expect = 4.5e-17 Identity = 61/122 (50.00%), Postives = 66/122 (54.10%), Query Frame = 0
BLAST of Carg25402 vs. NCBI nr
Match: XP_040955121.1 (DNA-directed RNA polymerase subunit beta'-like [Gossypium hirsutum]) HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14 Identity = 57/125 (45.60%), Postives = 67/125 (53.60%), Query Frame = 0
BLAST of Carg25402 vs. NCBI nr
Match: VVW91431.1 (unnamed protein product, partial [Nymphaea colorata]) HSP 1 Score: 89.7 bits (221), Expect = 2.1e-14 Identity = 56/122 (45.90%), Postives = 63/122 (51.64%), Query Frame = 0
BLAST of Carg25402 vs. NCBI nr
Match: VVW90806.1 (unnamed protein product, partial [Nymphaea colorata]) HSP 1 Score: 87.8 bits (216), Expect = 8.0e-14 Identity = 55/121 (45.45%), Postives = 62/121 (51.24%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: A8W3B5 (DNA-directed RNA polymerase subunit beta' OS=Cuscuta exaltata OX=476139 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13 Identity = 50/123 (40.65%), Postives = 63/123 (51.22%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: Q6EW57 (DNA-directed RNA polymerase subunit beta' OS=Nymphaea alba OX=34301 GN=rpoC1 PE=3 SV=2) HSP 1 Score: 77.4 bits (189), Expect = 1.4e-13 Identity = 51/123 (41.46%), Postives = 61/123 (49.59%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: Q589B9 (DNA-directed RNA polymerase subunit beta' OS=Silene latifolia OX=37657 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13 Identity = 50/123 (40.65%), Postives = 61/123 (49.59%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: A6MMJ8 (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes OX=145284 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13 Identity = 49/123 (39.84%), Postives = 62/123 (50.41%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy Swiss-Prot
Match: A0ZZ26 (DNA-directed RNA polymerase subunit beta' OS=Gossypium barbadense OX=3634 GN=rpoC1 PE=3 SV=2) HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13 Identity = 52/126 (41.27%), Postives = 65/126 (51.59%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy TrEMBL
Match: A0A6J5VV95 (DNA-directed RNA polymerase subunit OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS49370 PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 2.2e-17 Identity = 61/122 (50.00%), Postives = 66/122 (54.10%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy TrEMBL
Match: A0A5K1HQG7 (DNA-directed RNA polymerase subunit (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30932 PE=3 SV=1) HSP 1 Score: 89.7 bits (221), Expect = 1.0e-14 Identity = 56/122 (45.90%), Postives = 63/122 (51.64%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy TrEMBL
Match: A0A5K1HS53 (DNA-directed RNA polymerase subunit (Fragment) OS=Nymphaea colorata OX=210225 GN=NYM_LOCUS30763 PE=3 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 3.9e-14 Identity = 55/121 (45.45%), Postives = 62/121 (51.24%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy TrEMBL
Match: A0A452YM89 (DNA-directed RNA polymerase subunit OS=Aegilops tauschii subsp. strangulata OX=200361 PE=3 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 6.6e-14 Identity = 56/125 (44.80%), Postives = 67/125 (53.60%), Query Frame = 0
BLAST of Carg25402 vs. ExPASy TrEMBL
Match: W1P4N9 (DNA-directed RNA polymerase subunit (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s00390p00014170 PE=3 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13 Identity = 51/97 (52.58%), Postives = 58/97 (59.79%), Query Frame = 0
BLAST of Carg25402 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein ) HSP 1 Score: 74.3 bits (181), Expect = 8.5e-14 Identity = 43/82 (52.44%), Postives = 46/82 (56.10%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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