Carg25393 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25393
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr18: 3533318 .. 3533579 (-)
RNA-Seq ExpressionCarg25393
SyntenyCarg25393
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGCAACAATGGAGGACTTGAAGATTTCAATGAGATTCATTGGAGAAGTAGAGCAGTAACGAAGAGAAGGGTTTAAAAGACAGTTTTTGGAGATTGTAGACTTGAAATCTGAAGGTGGGTGTAAGGTGTTAAGATCTTCAATGACAGAAGCAGAGAAAATAACAGAAGAACAAGCCGCCATTGTTAAGAGGAACAAGATGAAATTCGCAGACATTGCCGCCATTGATGATTCTGAGATATTAAGATTAAGTTTTTAG

mRNA sequence

ATGGCTGGCAACAATGGAGGACTTGAAGATTTCAATGAGATTCATTGGAGAAACTTGAAATCTGAAGGTGGGTGTAAGGTGTTAAGATCTTCAATGACAGAAGCAGAGAAAATAACAGAAGAACAAGCCGCCATTGTTAAGAGGAACAAGATGAAATTCGCAGACATTGCCGCCATTGATGATTCTGAGATATTAAGATTAAGTTTTTAG

Coding sequence (CDS)

ATGGCTGGCAACAATGGAGGACTTGAAGATTTCAATGAGATTCATTGGAGAAACTTGAAATCTGAAGGTGGGTGTAAGGTGTTAAGATCTTCAATGACAGAAGCAGAGAAAATAACAGAAGAACAAGCCGCCATTGTTAAGAGGAACAAGATGAAATTCGCAGACATTGCCGCCATTGATGATTCTGAGATATTAAGATTAAGTTTTTAG

Protein sequence

MAGNNGGLEDFNEIHWRNLKSEGGCKVLRSSMTEAEKITEEQAAIVKRNKMKFADIAAIDDSEILRLSF
Homology
[Close]
BLAST of Carg25393 vs. NCBI nr
Match: KAG7012578.1 (hypothetical protein SDJN02_25330, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 137.1 bits (344), Expect = 5.7e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MAGNNGGLEDFNEIHWRNLKSEGGCKVLRSSMTEAEKITEEQAAIVKRNKMKFADIAAID 60
          MAGNNGGLEDFNEIHWRNLKSEGGCKVLRSSMTEAEKITEEQAAIVKRNKMKFADIAAID
Sbjct: 1  MAGNNGGLEDFNEIHWRNLKSEGGCKVLRSSMTEAEKITEEQAAIVKRNKMKFADIAAID 60

Query: 61 DSEILRLSF 70
          DSEILRLSF
Sbjct: 61 DSEILRLSF 69

The following BLAST results are available for this feature:
BLAST of Carg25393 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012578.15.7e-29100.00hypothetical protein SDJN02_25330, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Carg25393 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25393 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25393 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25393-RACarg25393-RAmRNA