Carg25390 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25390
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	PMD domain-containing protein
Location	Carg_Chr16: 5271593 .. 5272888 (-)
RNA-Seq Expression	Carg25390
Synteny	Carg25390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGAGGTTGGTTCTGAAAGATCAAAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAGCTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTCCTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTACGTCTCGACCTGGGTTGTTTATCTTTATGTTTTAAGTTTCTTGGCTTGTGGGATTTAGATTCTTGTAACTCTTCAGTGCTTTCCCCTTCACTTGAAATAAGTGTTTCAGTTGCTGAGACTTTAAACTACTTCATATCATTATAGAATAAGCCTTCTTCCCCCTGAACAGATTTGCTTAGAAGATCAGTTTAAGACAACTTAAAGCCAACTCTTCTCATCTAGAATAACTACAAGTATGCTTGTCTGAACCACTCTTTTACTTCATCAAACAGGACCATAGAAGCTAACATTCTTTAGGAAATCAAGTGTTTCGAGTCTAGAATAATTATAAATACGTTTATCTTTCATATCTCGGTACTTTCTAGAATATGCGGAGATATCTATAACAGTCATACATTTTTTTCACCCTTCATACTTTCTTCTTAGTGCCAAAACTCAGTGGTAGAAAATGATACCTCGAGACTTGAAAGTAGATATCTTTTTCTCCAGTACAAACCGGTATTGAAGTTGATTTGTATGCATCTTGATCGATCACACGACATAGAATCGTACCAGACTCGTTTCACCAGCAGCTTCATAAGCTTCATCTCTTGACAAAACCTACACAGAAAACAACTGTTATTTCCTAACTAGTTTTGTTACTACCAAATCTAAAAAATAACTGTTCTCTTTGTCTTCTTCAAGAACATCATCTTTTATCATAACAGTGACAAGACACAGAACATCGACACAAACCAGTACCCATCATTACAGAATACATGCTTTTCTTTTAAGGTCAAGTCAAGTCAAGTCATTGCACTGAACATTGGAAATGATATGGTTTTGTTTGTTGAGCTTGTGGTTTTTCTATGGCAGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTGATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGA

mRNA sequence

ATGAGTGAGGTTGGTTCTGAAAGATCAAAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAGCTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTCCTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTGATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGA

Coding sequence (CDS)

ATGAGTGAGGTTGGTTCTGAAAGATCAAAGTCATGGAACATATACACGACTTCAGAGCAGAGCCCATCATCATCTCAAACAGGCATTGGTCAAGAAGCTCCATGGAAGAGCTTTGGATCCTCCATGAATGCCATTTCCTTTGGCTTTGTTGCCACTGCAATCTTGATATCAATGTTCCTTATCATGGCAATCTTTGAGCATCTGTTTAGACCAACATCTCCTTTCTCCTCATCTGAAGTGACCAACAACTCCGCAGAATCAGGTCCTGCCGAGAAATTCATAAGTCCTAATACGGTGCCAACATCATATGCGTCTGATTTCTCAGTGTTGATGCCAGGGCAGGACATCCCCACCTTCATTGCGCAACCAGCTCCTCTGCCATGCCAAAGAGAGAGGATTTATTGGCCATCTCATGACCATAATTTTTTAGGTCCTTGA

Protein sequence

MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP

Homology

[Close]

BLAST of Carg25390 vs. NCBI nr
Match: KAG6577368.1 (hypothetical protein SDJN03_24942, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015458.1 hypothetical protein SDJN02_23094, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 289.3 bits (739), Expect = 1.9e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]

BLAST of Carg25390 vs. NCBI nr
Match: XP_022929236.1 (uncharacterized protein LOC111435885 isoform X2 [Cucurbita moschata])

HSP 1 Score: 287.7 bits (735), Expect = 5.5e-74
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]

BLAST of Carg25390 vs. NCBI nr
Match: XP_022984567.1 (uncharacterized protein LOC111482824 isoform X2 [Cucurbita maxima])

HSP 1 Score: 286.2 bits (731), Expect = 1.6e-73
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVPTSYASDFSVLMPGQ IPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]

BLAST of Carg25390 vs. NCBI nr
Match: XP_023552325.1 (uncharacterized protein LOC111810023 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.5 bits (711), Expect = 3.3e-71
Identity = 141/145 (97.24%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSKSWNIYTTSEQSPSSSQT IGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTSIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF S NTVPTSYASDFSVLMPGQ IPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFASLNTVPTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]

BLAST of Carg25390 vs. NCBI nr
Match: XP_022929232.1 (uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata] >XP_022929233.1 uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata] >XP_022929234.1 uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata])

HSP 1 Score: 271.9 bits (694), Expect = 3.1e-69
Identity = 144/175 (82.29%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT---------------------- 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT                      
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTNIIFYHNSDKTQNIDTNQYPSL 120

Query: 121 --------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 146
                   VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 QNTCFSFKVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 175

[Close]

BLAST of Carg25390 vs. ExPASy TrEMBL
Match: A0A6J1EMJ9 (uncharacterized protein LOC111435885 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111435885 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.6e-74
Identity = 144/145 (99.31%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]

BLAST of Carg25390 vs. ExPASy TrEMBL
Match: A0A6J1J2I5 (uncharacterized protein LOC111482824 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482824 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 7.7e-74
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFI 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNTVPTSYASDFSVLMPGQ IPTFI
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTVPTSYASDFSVLMPGQHIPTFI 120

Query: 121 AQPAPLPCQRERIYWPSHDHNFLGP 146
           AQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 AQPAPLPCQRERIYWPSHDHNFLGP 145

[Close]

BLAST of Carg25390 vs. ExPASy TrEMBL
Match: A0A6J1EM82 (uncharacterized protein LOC111435885 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111435885 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 144/175 (82.29%), Postives = 145/175 (82.86%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERS+SWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSESWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT---------------------- 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT                      
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTNIIFYHNSDKTQNIDTNQYPSL 120

Query: 121 --------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 146
                   VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 QNTCFSFKVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 175

[Close]

BLAST of Carg25390 vs. ExPASy TrEMBL
Match: A0A6J1JAW6 (uncharacterized protein LOC111482824 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482824 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 4.4e-69
Identity = 143/175 (81.71%), Postives = 144/175 (82.29%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFISPNT---------------------- 120
           IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKF+SPNT                      
Sbjct: 61  IMAIFEHLFRPTSPFSSSEVTNNSAESGPAEKFVSPNTSIIFYHNSDKTQNIDTNQYPPL 120

Query: 121 --------VPTSYASDFSVLMPGQDIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 146
                   VPTSYASDFSVLMPGQ IPTFIAQPAPLPCQRERIYWPSHDHNFLGP
Sbjct: 121 QNTCFSFKVPTSYASDFSVLMPGQHIPTFIAQPAPLPCQRERIYWPSHDHNFLGP 175

[Close]

BLAST of Carg25390 vs. ExPASy TrEMBL
Match: A0A6J1FV27 (uncharacterized protein LOC111447541 OS=Cucurbita moschata OX=3662 GN=LOC111447541 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.2e-64
Identity = 130/146 (89.04%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MSEVGSERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFL 60
           MSE+GSERSKSWNIYTT +QSP SSQTGIGQ+APWK+FGSSMNAISFGFVATAILISMFL
Sbjct: 1   MSEIGSERSKSWNIYTTPDQSP-SSQTGIGQDAPWKNFGSSMNAISFGFVATAILISMFL 60

Query: 61  IMAIFEHLFRPTSPFSSS-EVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTF 120
           IMAIFEHLFRPTS FSSS EVTNN A+SGP EKF SPNTVPTSYA+DFSVLMPGQ IPTF
Sbjct: 61  IMAIFEHLFRPTSSFSSSGEVTNNFAQSGPVEKFASPNTVPTSYAADFSVLMPGQHIPTF 120

Query: 121 IAQPAPLPCQRERIYWPSHDHNFLGP 146
           IAQPAPLPCQRE  YWPSHDHNFLGP
Sbjct: 121 IAQPAPLPCQREGTYWPSHDHNFLGP 145

[Close]

BLAST of Carg25390 vs. TAIR 10
Match: AT1G09812.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G58007.2); Has 93 Blast hits to 93 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 93; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 8.5e-25
Identity = 68/133 (51.13%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 8   RSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIFEH 67
           +S SW+IY+  E            E PW+S  +SMNAISFGFVATAILISMFLIMAIFEH
Sbjct: 3   KSSSWSIYSPREGD---------SEGPWRS-STSMNAISFGFVATAILISMFLIMAIFEH 62

Query: 68  LFRP-TSPFSSSEVTNNSAESGPAE---KFISPNTVPTSYASDFSVLMPGQDIPTFIAQP 127
           LFRP  S F S          G ++        + VP S   D SV+MPG+ +P+ IA P
Sbjct: 63  LFRPENSSFDSPHQIRQRQRDGSSQFQKLADQASMVPVSTVVDVSVVMPGEKLPSHIALP 122

Query: 128 APLPCQRERIYWP 137
           APLPC+RE I+WP
Sbjct: 123 APLPCRREGIHWP 125

[Close]

BLAST of Carg25390 vs. TAIR 10
Match: AT1G58007.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 91 Blast hits to 91 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 91; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-21
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 6   SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIF 65
           S   ++W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI 
Sbjct: 4   SRSIRTWSIYRTKDTS-----------------GSSMNAISFGFVATAILILMFIIMAIL 63

Query: 66  EHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAP 125
           EHLFR +   SS +V ++S     AEK    + VP +  SD SV+MPG  +P+++A PAP
Sbjct: 64  EHLFR-SDHSSSYDVDDSSQFQKLAEK---ASMVPVT-TSDVSVVMPGDKLPSYVALPAP 114

Query: 126 LPCQRERIYWPSH 139
            PC+RE I WPSH
Sbjct: 124 FPCRREGIRWPSH 114

[Close]

BLAST of Carg25390 vs. TAIR 10
Match: AT1G58007.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-21
Identity = 65/133 (48.87%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 6   SERSKSWNIYTTSEQSPSSSQTGIGQEAPWKSFGSSMNAISFGFVATAILISMFLIMAIF 65
           S   ++W+IY T + S                 GSSMNAISFGFVATAILI MF+IMAI 
Sbjct: 4   SRSIRTWSIYRTKDTS-----------------GSSMNAISFGFVATAILILMFIIMAIL 63

Query: 66  EHLFRPTSPFSSSEVTNNSAESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAP 125
           EHLFR +   SS +V ++S     AEK    + VP +  SD SV+MPG  +P+++A PAP
Sbjct: 64  EHLFR-SDHSSSYDVDDSSQFQKLAEK---ASMVPVT-TSDVSVVMPGDKLPSYVALPAP 114

Query: 126 LPCQRERIYWPSH 139
            PC+RE I WPSH
Sbjct: 124 FPCRREGIRWPSH 114

[Close]

BLAST of Carg25390 vs. TAIR 10
Match: AT1G11120.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G28170.1); Has 94 Blast hits to 94 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.1 bits (248), Expect = 1.5e-21
Identity = 60/130 (46.15%), Postives = 79/130 (60.77%), Query Frame = 0


Query: 22  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSPFSSSEV 81
           P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+  +++  
Sbjct: 17  PIGAPMNLRREEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSD 76

Query: 82  TNNS----------AESGPAEKFISPNTVPTSYASDFSVLMPGQDIPTFIAQPAPLPCQR 141
           +++S            +G A K    +   T Y++  SVLMPG DIPTFIA PAP+PC  
Sbjct: 77  SSSSRVLPGMDSRVGFNGAATKLGYQSPKMTVYSNGVSVLMPGDDIPTFIAHPAPVPCPP 136

[Close]

BLAST of Carg25390 vs. TAIR 10
Match: AT1G11120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G09812.1); Has 270 Blast hits to 255 proteins in 62 species: Archae - 0; Bacteria - 2; Metazoa - 93; Fungi - 14; Plants - 126; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-18
Identity = 63/156 (40.38%), Postives = 78/156 (50.00%), Query Frame = 0


Query: 22  PSSSQTGIGQEAPWKS-FGSSMNAISFGFVATAILISMFLIMAIFEHLFRPTSP------ 81
           P  +   + +E PWKS F  S+NA+SFGFVATAILISMFL+MAIFE L R T+       
Sbjct: 17  PIGAPMNLRREEPWKSQFDDSVNAVSFGFVATAILISMFLVMAIFERLIRTTTTSTTNSD 76

Query: 82  ------------------------FSSSEVTNN------SAESGPAEKFISPNTVPTSYA 141
                                   + S + +NN      S     +E FI      T Y+
Sbjct: 77  SSSSRVLPGMDSRVGFNGAATKLGYQSPKASNNRIVFSFSFNILKSELFIVIILRMTVYS 136

The following BLAST results are available for this feature:

BLAST of Carg25390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6577368.1	1.9e-74	100.00	hypothetical protein SDJN03_24942, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022929236.1	5.5e-74	99.31	uncharacterized protein LOC111435885 isoform X2 [Cucurbita moschata]	[more]
XP_022984567.1	1.6e-73	98.62	uncharacterized protein LOC111482824 isoform X2 [Cucurbita maxima]	[more]
XP_023552325.1	3.3e-71	97.24	uncharacterized protein LOC111810023 [Cucurbita pepo subsp. pepo]	[more]
XP_022929232.1	3.1e-69	82.29	uncharacterized protein LOC111435885 isoform X1 [Cucurbita moschata] >XP_0229292...	[more]

BLAST of Carg25390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Carg25390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EMJ9	2.6e-74	99.31	uncharacterized protein LOC111435885 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1J2I5	7.7e-74	98.62	uncharacterized protein LOC111482824 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EM82	1.5e-69	82.29	uncharacterized protein LOC111435885 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1JAW6	4.4e-69	81.71	uncharacterized protein LOC111482824 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FV27	3.2e-64	89.04	uncharacterized protein LOC111447541 OS=Cucurbita moschata OX=3662 GN=LOC1114475...	[more]

BLAST of Carg25390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09812.1	8.5e-25	51.13	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G58007.1	1.5e-21	48.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G58007.2	1.5e-21	48.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G11120.2	1.5e-21	46.15	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G11120.1	2.0e-18	40.38	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..95
None	No IPR available	PANTHER	PTHR33728	CTTNBP 2 AMINO-TERMINAL-LIKE PROTEIN	coord: 1..143
None	No IPR available	PANTHER	PTHR33728:SF3	MULTIDRUG RESISTANCE PROTEIN	coord: 1..143

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25390-RA	Carg25390-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane