Carg25389 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25389
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr16: 5270584 .. 5272799 (+)
RNA-Seq ExpressionCarg25389
SyntenyCarg25389
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATGGAAGTTGTAAAGCAAGCGGGTTGAAGACTGGAGATTATCGAGAATCAACAGCAGATCTTCTAACCAGGCTGAAGGGTCTCAACTGCTCTGAAAAGGAGAAGTGTTAAGAGAGGAGTTAGATCCTCTTTTAGGACAATCCAATTAAGCCCGAGAGAAATAATTCGAGGAGGAGTGAGACAACGTTGGATGACTCTGCTGTGTATTCGGTTACAATTCAAATGAGGAGTCATCTATGTCGGTGATGTAATTTACTTTTTGTGTAGGTAATAGGGAATTCAACACATTGAAGGTTCTTGCACCTTTTCACGTAATATTTGTACATAACATTTTCAGGTCTTCTGTGAATAAGTAGAGATTTCAAATGTTTCTTGTGCTTGTTAGCCATGTTTGTGAATGAAAGCTTTCAAACAAACACTCTTTAAATTCTTGAATCTTGAAGCTGTTCCTCACTGAGAAACTTTTGAGCCCCGAGTGAGGATGATGATATTATATTACAGGGTCAACATAATTTCCCCGAGTGCCTTTTCTTCCTCTCATGAAGGTTATCTGTAAGCTTGTATCCATAAGAAAAATGAGTGCCATACAATATAAGTTTCAATGTTGTTCGGTTTTATTTTTAGTTCTTGAATACATAATTTAATTCTCGTCATTAATCTTTATGTACTTGATTTAGTAAGGTTTTACATTACCCCTTCTCAAATTTGGCAATAGACAAGAAGCGGAGATTCACCATCAGCCTAAAATGATGAGCATAAAAGTGAGGTGATTTCTACTTATATCTCAAATCTTTATCAAACAAGTAGAATCGTGTAAATACTGCTGACTTCTTTGATAATCAATTTACAGATGAGAAACTGGGAACAAAAAAGTATCAGCATTTGGCAAATCTCCCTGTGGGTGAAGAAGCACAAAGTATTATTATTCTGAGAAAAAGCAAAGCTGATAGTTTTCCTAAATACAGTAACTGCTTTCTATGGTGGCAAGAAATACCATATATTTGCCTCAAGGACCTAAAAAATTATGGTCATGAGATGGCCAATAAATCCTCTCTCTTTGGCATGGCAGAGGAGCTGGTTGCGCAATGAAGGTGGGGATGTCCTGCCCTGGCATCAACACTGAGAAATCAGACGCATATGATGTTGGCACCTGCCATAGAAAAACCACAAGCTCAACAAACAAAACCATATCATTTCCAATGTTCAGTGCAATGACTTGACTTGACTTGACCTTAAAAGAAAAGCATGTATTCTGTAATGATGGGTACTGGTTTGTGTCGATGTTCTGTGTCTTGTCACTGTTATGATAAAAGATGATGTTCTTGAAGAAGACAAAGAGAACAGTTATTTTTTAGATTTGGTAGTAACAAAACTAGTTAGGAAATAACAGTTGTTTTCTGTGTAGGTTTTGTCAAGAGATGAAGCTTATGAAGCTGCTGGTGAAACGAGTCTGGTACGATTCTATGTCGTGTGATCGATCAAGATGCATACAAATCAACTTCAATACCGGTTTGTACTGGAGAAAAAGATATCTACTTTCAAGTCTCGAGGTATCATTTTCTACCACTGAGTTTTGGCACTAAGAAGAAAGTATGAAGGGTGAAAAAAATGTATGACTGTTATAGATATCTCCGCATATTCTAGAAAGTACCGAGATATGAAAGATAAACGTATTTATAATTATTCTAGACTCGAAACACTTGATTTCCTAAAGAATGTTAGCTTCTATGGTCCTGTTTGATGAAGTAAAAGAGTGGTTCAGACAAGCATACTTGTAGTTATTCTAGATGAGAAGAGTTGGCTTTAAGTTGTCTTAAACTGATCTTCTAAGCAAATCTGTTCAGGGGGAAGAAGGCTTATTCTATAATGATATGAAGTAGTTTAAAGTCTCAGCAACTGAAACACTTATTTCAAGTGAAGGGGAAAGCACTGAAGAGTTACAAGAATCTAAATCCCACAAGCCAAGAAACTTAAAACATAAAGATAAACAACCCAGGTCGAGACGTACCGTATTAGGACTTATGAATTTCTCGGCAGGACCTGATTCTGCGGAGTTGTTGGTCACTTCAGATGAGGAGAAAGGAGATGTTGGTCTAAACAGATGCTCAAAGATTGCCATGATAAGGAACATTGATATCAAGATTGCAGTGGCAACAAAGCCAAAGGAAATGGCATTCATGGAGGATCCAAAGCTCTTCCATGGAGCTTCTTGA

mRNA sequence

ATGAATGGAAGTTGTAAAGCAAGCGGGTTGAAGACTGGAGATTATCGAGAATCAACAGCAGATCTTCTAACCAGGCTGAAGGGTCTCAACTGCTCTGAAAAGGAGAAGTTTTGTCAAGAGATGAAGCTTATGAAGCTGCTGGTGAAACGAGTCTGGTACGATTCTATGTCGTGTGATCGATCAAGATGCATACAAATCAACTTCAATACCGGACCTGATTCTGCGGAGTTGTTGGTCACTTCAGATGAGGAGAAAGGAGATGTTGGTCTAAACAGATGCTCAAAGATTGCCATGATAAGGAACATTGATATCAAGATTGCAGTGGCAACAAAGCCAAAGGAAATGGCATTCATGGAGGATCCAAAGCTCTTCCATGGAGCTTCTTGA

Coding sequence (CDS)

ATGAATGGAAGTTGTAAAGCAAGCGGGTTGAAGACTGGAGATTATCGAGAATCAACAGCAGATCTTCTAACCAGGCTGAAGGGTCTCAACTGCTCTGAAAAGGAGAAGTTTTGTCAAGAGATGAAGCTTATGAAGCTGCTGGTGAAACGAGTCTGGTACGATTCTATGTCGTGTGATCGATCAAGATGCATACAAATCAACTTCAATACCGGACCTGATTCTGCGGAGTTGTTGGTCACTTCAGATGAGGAGAAAGGAGATGTTGGTCTAAACAGATGCTCAAAGATTGCCATGATAAGGAACATTGATATCAAGATTGCAGTGGCAACAAAGCCAAAGGAAATGGCATTCATGGAGGATCCAAAGCTCTTCCATGGAGCTTCTTGA

Protein sequence

MNGSCKASGLKTGDYRESTADLLTRLKGLNCSEKEKFCQEMKLMKLLVKRVWYDSMSCDRSRCIQINFNTGPDSAELLVTSDEEKGDVGLNRCSKIAMIRNIDIKIAVATKPKEMAFMEDPKLFHGAS
Homology
[Close]
BLAST of Carg25389 vs. NCBI nr
Match: KAG7015457.1 (hypothetical protein SDJN02_23093, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 261.2 bits (666), Expect = 4.8e-66
Identity = 128/128 (100.00%), Postives = 128/128 (100.00%), Query Frame = 0 

Query: 1   MNGSCKASGLKTGDYRESTADLLTRLKGLNCSEKEKFCQEMKLMKLLVKRVWYDSMSCDR 60
           MNGSCKASGLKTGDYRESTADLLTRLKGLNCSEKEKFCQEMKLMKLLVKRVWYDSMSCDR
Sbjct: 1   MNGSCKASGLKTGDYRESTADLLTRLKGLNCSEKEKFCQEMKLMKLLVKRVWYDSMSCDR 60

Query: 61  SRCIQINFNTGPDSAELLVTSDEEKGDVGLNRCSKIAMIRNIDIKIAVATKPKEMAFMED 120
           SRCIQINFNTGPDSAELLVTSDEEKGDVGLNRCSKIAMIRNIDIKIAVATKPKEMAFMED
Sbjct: 61  SRCIQINFNTGPDSAELLVTSDEEKGDVGLNRCSKIAMIRNIDIKIAVATKPKEMAFMED 120

Query: 121 PKLFHGAS 129
           PKLFHGAS
Sbjct: 121 PKLFHGAS 128

[Close]
BLAST of Carg25389 vs. NCBI nr
Match: KAG6577367.1 (MACPF domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.2 bits (147), Expect = 7.3e-06
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0 

Query: 8   SGLKTGDYRESTADLLTRLKGLNCSEKEK 37
           SGLKTGDYRESTADLLTRLKGLNCSEKEK
Sbjct: 605 SGLKTGDYRESTADLLTRLKGLNCSEKEK 633

The following BLAST results are available for this feature:
BLAST of Carg25389 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7015457.14.8e-66100.00hypothetical protein SDJN02_23093, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6577367.17.3e-06100.00MACPF domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Carg25389 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25389 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25389 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25389-RACarg25389-RAmRNA