Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGATAGCTACTCCAAAATCAAAGCCGCCTGCAAATTCAAATCAAGATCCATCGATTACTCCGATCTCACTTCGCTTCCTCACTCTCCTAGATTCAACGCTGCCGCCGCCGTCTCCAATCCGAACTCTCACGATTCCAATAAGAACAAGACGAATCGGCAACACAGCCGTTTGCCGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGACGAATACGGCGGAGAAGTCTCCGCCAGAGCCGCCGCGCTGAGTCGGAACAACTCTGTTTCTTCATCAGTCTCTGGATTCCATTCAGCGGTGAAGAGAGCTCTGTCGATGCGGAGATCTTCGTCCGTAGCGGAACGGTACTGTAGAATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGATGATGATGAAATGGAAGATGGAGATTCGAAGGAGGAAAGAAAAACAGGAGGATCTGTGAAGAAGACGAAGAAGAAGAAGAAGAAGAACTCGGCAGGGAAGATCGTTAGAGCCTGTAAGCGACTTTTTGGAATCTAG
mRNA sequence
ATGGCCGATAGCTACTCCAAAATCAAAGCCGCCTGCAAATTCAAATCAAGATCCATCGATTACTCCGATCTCACTTCGCTTCCTCACTCTCCTAGATTCAACGCTGCCGCCGCCGTCTCCAATCCGAACTCTCACGATTCCAATAAGAACAAGACGAATCGGCAACACAGCCGTTTGCCGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGACGAATACGGCGGAGAAGTCTCCGCCAGAGCCGCCGCGCTGAGTCGGAACAACTCTGTTTCTTCATCAGTCTCTGGATTCCATTCAGCGGTGAAGAGAGCTCTGTCGATGCGGAGATCTTCGTCCGTAGCGGAACGGTACTGTAGAATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGATGATGATGAAATGGAAGATGGAGATTCGAAGGAGGAAAGAAAAACAGGAGGATCTGTGAAGAAGACGAAGAAGAAGAAGAAGAAGAACTCGGCAGGGAAGATCGTTAGAGCCTGTAAGCGACTTTTTGGAATCTAG
Coding sequence (CDS)
ATGGCCGATAGCTACTCCAAAATCAAAGCCGCCTGCAAATTCAAATCAAGATCCATCGATTACTCCGATCTCACTTCGCTTCCTCACTCTCCTAGATTCAACGCTGCCGCCGCCGTCTCCAATCCGAACTCTCACGATTCCAATAAGAACAAGACGAATCGGCAACACAGCCGTTTGCCGGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGACGAATACGGCGGAGAAGTCTCCGCCAGAGCCGCCGCGCTGAGTCGGAACAACTCTGTTTCTTCATCAGTCTCTGGATTCCATTCAGCGGTGAAGAGAGCTCTGTCGATGCGGAGATCTTCGTCCGTAGCGGAACGGTACTGTAGAATTCACGATCAGTTCGCGACGCTTGCATCGCCGATCGATGATGATGAAATGGAAGATGGAGATTCGAAGGAGGAAAGAAAAACAGGAGGATCTGTGAAGAAGACGAAGAAGAAGAAGAAGAAGAACTCGGCAGGGAAGATCGTTAGAGCCTGTAAGCGACTTTTTGGAATCTAG
Protein sequence
MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLPEEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI
Homology
BLAST of Carg25387 vs. NCBI nr
Match:
KAG7015455.1 (hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 320.9 bits (821), Expect = 7.1e-84
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 177
HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 176
BLAST of Carg25387 vs. NCBI nr
Match:
XP_022929198.1 (uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothetical protein SDJN03_24940, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 317.8 bits (813), Expect = 6.0e-83
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 177
HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSA KIVRACKRLFGI
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176
BLAST of Carg25387 vs. NCBI nr
Match:
XP_022136741.1 (uncharacterized protein LOC111008371 [Momordica charantia])
HSP 1 Score: 211.5 bits (537), Expect = 6.0e-51
Identity = 129/180 (71.67%), Postives = 144/180 (80.00%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNS--HDSNKNKTNRQHSR 60
MAD YSKIKAACKFKSRSIDYSDL SLPHS +F AAV NPNS H+S++N+ NR ++
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLASLPHSLKF--TAAVPNPNSLAHESDQNRANRARAQ 60
Query: 61 --LPEEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAER 120
LP EEEEDEYGG AALSRN+SVSSS SG HSAVKRALSMRRSSSVAER
Sbjct: 61 SCLP------EEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAER 120
Query: 121 YCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 177
YCRIHDQFATLASPIDD+E+ GDSKE RK+ GSV ++KKKN+AGKIVRACKRLFG+
Sbjct: 121 YCRIHDQFATLASPIDDEEIGAGDSKESRKSAGSV----RRKKKNAAGKIVRACKRLFGL 168
BLAST of Carg25387 vs. NCBI nr
Match:
KAG7031359.1 (hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 201.8 bits (512), Expect = 4.8e-48
Identity = 125/176 (71.02%), Postives = 140/176 (79.55%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
MAD+YSKI+AACK KSRS+DYSDL+SLPHS RF AAA SNPNS DS++N+TNR SR P
Sbjct: 1 MADTYSKIEAACKLKSRSVDYSDLSSLPHSLRF--AAADSNPNSRDSDQNRTNR--SREP 60
Query: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
EEEEDEY +A A+ L RN SVS+S SGFHSAVKRALSMRRSSSVAERY RI
Sbjct: 61 PHGCLPEEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRI 120
Query: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 177
HDQF TLASPIDDDE+E +SKE R GGSV +KKK N+AGKIVRACKRLFG+
Sbjct: 121 HDQFGTLASPIDDDEIEGEESKEGRNAGGSV----RKKKTNAAGKIVRACKRLFGL 168
BLAST of Carg25387 vs. NCBI nr
Match:
KAA0060595.1 (hypothetical protein E6C27_scaffold22G004710 [Cucumis melo var. makuwa] >TYK02276.1 hypothetical protein E5676_scaffold18G00790 [Cucumis melo var. makuwa])
HSP 1 Score: 196.1 bits (497), Expect = 2.6e-46
Identity = 127/176 (72.16%), Postives = 138/176 (78.41%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNR----QH 60
MAD YSKIKAACKFKSRSIDYSDL+SLPHS FN AAVSNP SH SN ++TNR H
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLSSLPHSLTFN-NAAVSNPISHHSNHSRTNRPQEPPH 60
Query: 61 SRLPEEEEEEEEEE-DEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAE 120
RLPEE+EE ++E D G AA LSRN+SVSSSVSGF SAVKRALSMRRSSSVAE
Sbjct: 61 RRLPEEDEEVNDDECDRPRG--GTAAATLSRNSSVSSSVSGFQSAVKRALSMRRSSSVAE 120
Query: 121 RYCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACK 172
RYCRIHDQFAT ASPI+DDE+E GDSKE K GGS KKKKK N+AGKIVRA +
Sbjct: 121 RYCRIHDQFATFASPIEDDELEGGDSKERGKLGGSA--IKKKKKTNAAGKIVRALR 171
BLAST of Carg25387 vs. ExPASy TrEMBL
Match:
A0A6J1ERE9 (uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC111435863 PE=4 SV=1)
HSP 1 Score: 317.8 bits (813), Expect = 2.9e-83
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP
Sbjct: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNRQHSRLP 60
Query: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI
Sbjct: 61 EEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRI 120
Query: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 177
HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSA KIVRACKRLFGI
Sbjct: 121 HDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176
BLAST of Carg25387 vs. ExPASy TrEMBL
Match:
A0A6J1C4C9 (uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008371 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 2.9e-51
Identity = 129/180 (71.67%), Postives = 144/180 (80.00%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNS--HDSNKNKTNRQHSR 60
MAD YSKIKAACKFKSRSIDYSDL SLPHS +F AAV NPNS H+S++N+ NR ++
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLASLPHSLKF--TAAVPNPNSLAHESDQNRANRARAQ 60
Query: 61 --LPEEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAER 120
LP EEEEDEYGG AALSRN+SVSSS SG HSAVKRALSMRRSSSVAER
Sbjct: 61 SCLP------EEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAER 120
Query: 121 YCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 177
YCRIHDQFATLASPIDD+E+ GDSKE RK+ GSV ++KKKN+AGKIVRACKRLFG+
Sbjct: 121 YCRIHDQFATLASPIDDEEIGAGDSKESRKSAGSV----RRKKKNAAGKIVRACKRLFGL 168
BLAST of Carg25387 vs. ExPASy TrEMBL
Match:
A0A5A7V402 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00790 PE=4 SV=1)
HSP 1 Score: 196.1 bits (497), Expect = 1.3e-46
Identity = 127/176 (72.16%), Postives = 138/176 (78.41%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNR----QH 60
MAD YSKIKAACKFKSRSIDYSDL+SLPHS FN AAVSNP SH SN ++TNR H
Sbjct: 1 MADGYSKIKAACKFKSRSIDYSDLSSLPHSLTFN-NAAVSNPISHHSNHSRTNRPQEPPH 60
Query: 61 SRLPEEEEEEEEEE-DEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAE 120
RLPEE+EE ++E D G AA LSRN+SVSSSVSGF SAVKRALSMRRSSSVAE
Sbjct: 61 RRLPEEDEEVNDDECDRPRG--GTAAATLSRNSSVSSSVSGFQSAVKRALSMRRSSSVAE 120
Query: 121 RYCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACK 172
RYCRIHDQFAT ASPI+DDE+E GDSKE K GGS KKKKK N+AGKIVRA +
Sbjct: 121 RYCRIHDQFATFASPIEDDELEGGDSKERGKLGGSA--IKKKKKTNAAGKIVRALR 171
BLAST of Carg25387 vs. ExPASy TrEMBL
Match:
A0A0A0L2N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 5.3e-45
Identity = 123/180 (68.33%), Postives = 137/180 (76.11%), Query Frame = 0
Query: 1 MADSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNSHDSNKNKTNR----QH 60
MAD YSKIKAA KFKSRSIDYSDL+SLPHS F +AAVSNP +TNR H
Sbjct: 1 MADGYSKIKAASKFKSRSIDYSDLSSLPHSLTF--SAAVSNP-------TRTNRPQEPPH 60
Query: 61 SRLPEEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAER 120
RLPEE+EE ++E + + AA L RN+SVSSSVSGF SAVKRALSMRRSSSVAER
Sbjct: 61 GRLPEEDEEVNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSSVAER 120
Query: 121 YCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 177
YCRIHDQFAT ASPI+DDEME GD KE K GGS + KKKKKKN+A KIVRACKR+FG+
Sbjct: 121 YCRIHDQFATFASPIEDDEMEGGDWKERGKIGGS-EIRKKKKKKNAAEKIVRACKRIFGL 170
BLAST of Carg25387 vs. ExPASy TrEMBL
Match:
A0A2N9II75 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41345 PE=4 SV=1)
HSP 1 Score: 105.9 bits (263), Expect = 1.7e-19
Identity = 82/174 (47.13%), Postives = 104/174 (59.77%), Query Frame = 0
Query: 3 DSYSKIKAACKFKSRSIDYSDLTSLPHSPRFNAAAAVSNPNS-HDSNKNKTNRQHSRLPE 62
+ Y+KI+ KS+S+D+SD + P N NS H S +TN+ +
Sbjct: 2 NGYAKIRIINTRKSKSVDFSDASLFP----------TKNTNSDHTSKHQETNQIKDTNTK 61
Query: 63 EEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRIH 122
+ + +E EDE G S +SR+ SVSSS SGF SA+KRA S+RRSSSV+ERYCRIH
Sbjct: 62 KTKTQESLEDEDGNGESFGMVLMSRSLSVSSSTSGFQSAMKRAFSLRRSSSVSERYCRIH 121
Query: 123 DQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFG 176
DQ TL SPIDDDE+ D S R SVKK+K K GKI++ACKRLFG
Sbjct: 122 DQSVTLTSPIDDDEVGDTMSGTRR----SVKKSKYK-----GGKILKACKRLFG 156
BLAST of Carg25387 vs. TAIR 10
Match:
AT4G24275.1 (Identified as a screen for stress-responsive genes. )
HSP 1 Score: 65.9 bits (159), Expect = 3.8e-11
Identity = 49/98 (50.00%), Postives = 59/98 (60.20%), Query Frame = 0
Query: 84 LSRNNSVSSSVSGFHSAVKRALSMRRSSSVAERYCRIHDQFATLASPI---DDDEMEDGD 143
LSRN SVS+S S +K +SMRRSSSV+ERYCRI+DQ + P+ + DE ED D
Sbjct: 39 LSRNRSVSASAQAVPSPIK--MSMRRSSSVSERYCRIYDQSSATTWPLPFHEGDEDEDDD 98
Query: 144 SKEERKTGGSVKKTKKKKKKNSAGK--IVRACKRLFGI 177
KE K KKKK N+ K V+ACKR FGI
Sbjct: 99 DKE---------KVHKKKKSNNFKKKAFVKACKRFFGI 125
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7015455.1 | 7.1e-84 | 100.00 | hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022929198.1 | 6.0e-83 | 99.43 | uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothet... | [more] |
XP_022136741.1 | 6.0e-51 | 71.67 | uncharacterized protein LOC111008371 [Momordica charantia] | [more] |
KAG7031359.1 | 4.8e-48 | 71.02 | hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
KAA0060595.1 | 2.6e-46 | 72.16 | hypothetical protein E6C27_scaffold22G004710 [Cucumis melo var. makuwa] >TYK0227... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1ERE9 | 2.9e-83 | 99.43 | uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC1114358... | [more] |
A0A6J1C4C9 | 2.9e-51 | 71.67 | uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008... | [more] |
A0A5A7V402 | 1.3e-46 | 72.16 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0L2N9 | 5.3e-45 | 68.33 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1 | [more] |
A0A2N9II75 | 1.7e-19 | 47.13 | Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41345 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
AT4G24275.1 | 3.8e-11 | 50.00 | Identified as a screen for stress-responsive genes. | [more] |