Carg25356 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25356
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr06: 4554103 .. 4554752 (+)
RNA-Seq ExpressionCarg25356
SyntenyCarg25356
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGCCTCCGCCCTCCTTTGTTTCCAAACCCAGGACTGCCTTCCATTCCGCGGCTCCTAAAACGGACCCACTTTTCTTCCTCTTTAAATCCAATTCACCAGGTGCGCACAATCTCATCCATTCTCTATATTTTCTCCCCCCTTTTTTTGGATTCTTCAATTCCTACTTCTTTCCCCTCTTCCCCATTCCCGCTCTCTGAACCGCTCAACATTTTCATAAACACAACTGCCTCAGGATCTCCTAAAACCATCCCACCACCACACTTCCCACAATCAACACCAGATAAGGGTATGATTCTGTTTCCTCTTTGTTGGCTCACTCCAGTTTATTTACCCATTTCTGTTTCTTTGTTGTCATGTTCGTTGAAATTCCATAATCGTAGCTGCTCGTTCTTTTATGGAATGTGGAAATCTCTATTTCAACCATCTATGTTTCTTCATAATCTGCATTTAGTCTGAATGGTTTTTCAACAACAATTTCAGTGTGTATATATCATCTGTAACAGACATTTTCCAAAGTGGATGTTGTAGTAAATAATTGCGTTGTTTTCCTGCAATGCGGGATGTTTCAGAGTCACATTCAGCCAAAGTCCTCGAGGTGGCAACCGGAGAAAACAAGACTGGCAAGATAAATTCAAAAAGTTGA

mRNA sequence

ATGGAGGCGCCTCCGCCCTCCTTTGTTTCCAAACCCAGGACTGCCTTCCATTCCGCGGCTCCTAAAACGGACCCACTTTTCTTCCTCTTTAAATCCAATTCACCAGAGTCACATTCAGCCAAAGTCCTCGAGGTGGCAACCGGAGAAAACAAGACTGGCAAGATAAATTCAAAAAGTTGA

Coding sequence (CDS)

ATGGAGGCGCCTCCGCCCTCCTTTGTTTCCAAACCCAGGACTGCCTTCCATTCCGCGGCTCCTAAAACGGACCCACTTTTCTTCCTCTTTAAATCCAATTCACCAGAGTCACATTCAGCCAAAGTCCTCGAGGTGGCAACCGGAGAAAACAAGACTGGCAAGATAAATTCAAAAAGTTGA

Protein sequence

MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPESHSAKVLEVATGENKTGKINSKS
Homology
[Close]
BLAST of Carg25356 vs. NCBI nr
Match: KAG7028413.1 (hypothetical protein SDJN02_09594, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 117.1 bits (292), Expect = 5.2e-23
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = 0 

Query: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPESHSAKVLEVATGENKTGKINSKS 60
          MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPESHSAKVLEVATGENKTGKINSKS
Sbjct: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPESHSAKVLEVATGENKTGKINSKS 59

[Close]
BLAST of Carg25356 vs. NCBI nr
Match: KAG6596933.1 (hypothetical protein SDJN03_10113, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 105.9 bits (263), Expect = 1.2e-19
Identity = 59/77 (76.62%), Postives = 59/77 (76.62%), Query Frame = 0 

Query: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSP------------------ESHSAKV 60
          MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSP                  ESHSAKV
Sbjct: 1  MEAPPPSFVSKPRTAFHSAAPKTDPLFFLFKSNSPGSPKTIPPPHFPQSTPDKESHSAKV 60

The following BLAST results are available for this feature:
BLAST of Carg25356 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7028413.15.2e-23100.00hypothetical protein SDJN02_09594, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6596933.11.2e-1976.62hypothetical protein SDJN03_10113, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Carg25356 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25356 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Carg25356 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25356-RACarg25356-RAmRNA