Carg25346 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview


Name	Carg25346
Type	gene
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Ethylene-responsive transcription factor, putative
Location	Carg_Chr06: 4705517 .. 4706110 (-)
RNA-Seq Expression	Carg25346
Synteny	Carg25346

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAGAGGGACAGCGGCGGTGCGCGTGGCACCAATAACCGGGTCGGAGCGGAGATACAGAGGAGTTCGCCGAAGGCCATGGGGGAGATTCGCGGCGGAGATCAGAGACCCATTGAAGAAGACCAGAGTTTGGTTGGGCACCTTCGATTCCGCCGAGGATGCCGCCCGTGCTTACGACAACGCTGCCATAACCCTCCGCGGCCCCAAAGCTAAAACCAATTTCCCCCTTCCCACTCCCACCTCCTTTTTCGATTACCCTCCTCCTTGCCCCGATCGCCGATTCCTTACTAACCCTCACAGACCCACTTCCAGCACCCTCAGCTCCACTGTTGAGTCCTTCAGTGGTCCCCGAACACCCTCTGCGGCGGCTGCCACTTCCGCCTCTCGTCGATACCCACGCACGCCGCCCGTCGTCCCTGAGGATTGCCATAGCGACTGCGATTCGTCGTCCTCGGTCATCGACGACGGCGACATCGCTTCCTCGTCCATGATTCGTCGGAAATCTCCCCTGCCGTTCGATCTTAACATTCAACCGTCTGATCATCTAGATTTTGGCGGCGATGATCTTGGACGCACCGCTTTGTGCCTCTGA

mRNA sequence

ATGAGGAGAGGGACAGCGGCGGTGCGCGTGGCACCAATAACCGGGTCGGAGCGGAGATACAGAGGAGTTCGCCGAAGGCCATGGGGGAGATTCGCGGCGGAGATCAGAGACCCATTGAAGAAGACCAGAGTTTGGTTGGGCACCTTCGATTCCGCCGAGGATGCCGCCCGTGCTTACGACAACGCTGCCATAACCCTCCGCGGCCCCAAAGCTAAAACCAATTTCCCCCTTCCCACTCCCACCTCCTTTTTCGATTACCCTCCTCCTTGCCCCGATCGCCGATTCCTTACTAACCCTCACAGACCCACTTCCAGCACCCTCAGCTCCACTGTTGAGTCCTTCAGTGGTCCCCGAACACCCTCTGCGGCGGCTGCCACTTCCGCCTCTCGTCGATACCCACGCACGCCGCCCGTCGTCCCTGAGGATTGCCATAGCGACTGCGATTCGTCGTCCTCGGTCATCGACGACGGCGACATCGCTTCCTCGTCCATGATTCGTCGGAAATCTCCCCTGCCGTTCGATCTTAACATTCAACCGTCTGATCATCTAGATTTTGGCGGCGATGATCTTGGACGCACCGCTTTGTGCCTCTGA

Coding sequence (CDS)

ATGAGGAGAGGGACAGCGGCGGTGCGCGTGGCACCAATAACCGGGTCGGAGCGGAGATACAGAGGAGTTCGCCGAAGGCCATGGGGGAGATTCGCGGCGGAGATCAGAGACCCATTGAAGAAGACCAGAGTTTGGTTGGGCACCTTCGATTCCGCCGAGGATGCCGCCCGTGCTTACGACAACGCTGCCATAACCCTCCGCGGCCCCAAAGCTAAAACCAATTTCCCCCTTCCCACTCCCACCTCCTTTTTCGATTACCCTCCTCCTTGCCCCGATCGCCGATTCCTTACTAACCCTCACAGACCCACTTCCAGCACCCTCAGCTCCACTGTTGAGTCCTTCAGTGGTCCCCGAACACCCTCTGCGGCGGCTGCCACTTCCGCCTCTCGTCGATACCCACGCACGCCGCCCGTCGTCCCTGAGGATTGCCATAGCGACTGCGATTCGTCGTCCTCGGTCATCGACGACGGCGACATCGCTTCCTCGTCCATGATTCGTCGGAAATCTCCCCTGCCGTTCGATCTTAACATTCAACCGTCTGATCATCTAGATTTTGGCGGCGATGATCTTGGACGCACCGCTTTGTGCCTCTGA

Protein sequence

MRRGTAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSGPRTPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPSDHLDFGGDDLGRTALCL

Homology

[Close]

BLAST of Carg25346 vs. NCBI nr
Match: KAG6596944.1 (Ethylene-responsive transcription factor 3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028423.1 Ethylene-responsive transcription factor 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 397.5 bits (1020), Expect = 6.7e-107
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MRRGTAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60
           MRRGTAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD
Sbjct: 1   MRRGTAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60

Query: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSGPRTP 120
           NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSGPRTP
Sbjct: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSGPRTP 120

Query: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPS 180
           SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPS
Sbjct: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPS 180

Query: 181 DHLDFGGDDLGRTALCL 198
           DHLDFGGDDLGRTALCL
Sbjct: 181 DHLDFGGDDLGRTALCL 197

[Close]

BLAST of Carg25346 vs. NCBI nr
Match: XP_023005563.1 (ethylene-responsive transcription factor 3-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 375.2 bits (962), Expect = 3.5e-100
Identity = 188/197 (95.43%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MRRGTAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60
           MR G AAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD
Sbjct: 1   MRXGRAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60

Query: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSGPRTP 120
           NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRF TNP RPT STLSSTVESFSGPR P
Sbjct: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFHTNPQRPTPSTLSSTVESFSGPRPP 120

Query: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPS 180
           SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRK PLPFDLNIQPS
Sbjct: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKYPLPFDLNIQPS 180

Query: 181 DHLDFGGDDLGRTALCL 198
           DHLDFG DDL RTALCL
Sbjct: 181 DHLDFGADDLRRTALCL 197

[Close]

BLAST of Carg25346 vs. NCBI nr
Match: XP_022948893.1 (LOW QUALITY PROTEIN: ethylene-responsive transcription factor 3-like [Cucurbita moschata])

HSP 1 Score: 368.2 bits (944), Expect = 4.3e-98
Identity = 190/201 (94.53%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MRRGTA----AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA 60
           MRRG A    AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA
Sbjct: 1   MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA 60

Query: 61  RAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSG 120
           RAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCP    LTNPHRPTSSTLSSTVESFSG
Sbjct: 61  RAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPD-LTNPHRPTSSTLSSTVESFSG 120

Query: 121 PRTPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN 180
           PR PSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN
Sbjct: 121 PRPPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN 180

Query: 181 IQPSDHLDFGGDDLGRTALCL 198
           IQPSDHLDFGGDDL RTALCL
Sbjct: 181 IQPSDHLDFGGDDLRRTALCL 200

[Close]

BLAST of Carg25346 vs. NCBI nr
Match: XP_023520762.1 (ethylene-responsive transcription factor 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.9 bits (912), Expect = 2.2e-94
Identity = 180/189 (95.24%), Postives = 181/189 (95.77%), Query Frame = 0


Query: 1   MRRGTA----AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA 60
           MRRG A    AVRV PITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA
Sbjct: 1   MRRGRAAADTAVRVVPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA 60

Query: 61  RAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSG 120
           RAYDNAAI+LRGPKAK NFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSG
Sbjct: 61  RAYDNAAISLRGPKAKINFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSG 120

Query: 121 PRTPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN 180
           PR PSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN
Sbjct: 121 PRPPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN 180

Query: 181 IQPSDHLDF 186
           IQPSDHLDF
Sbjct: 181 IQPSDHLDF 189

[Close]

BLAST of Carg25346 vs. NCBI nr
Match: XP_023005565.1 (ethylene-responsive transcription factor 3-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 354.8 bits (909), Expect = 4.9e-94
Identity = 178/185 (96.22%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MRRGTAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60
           MR G AAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD
Sbjct: 1   MRXGRAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60

Query: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSGPRTP 120
           NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRF TNP RPT STLSSTVESFSGPR P
Sbjct: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFHTNPQRPTPSTLSSTVESFSGPRPP 120

Query: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPS 180
           SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRK PLPFDLNIQPS
Sbjct: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKYPLPFDLNIQPS 180

Query: 181 DHLDF 186
           DHLDF
Sbjct: 181 DHLDF 185

[Close]

BLAST of Carg25346 vs. ExPASy Swiss-Prot
Match: Q9SXS8 (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-54
Identity = 136/229 (59.39%), Postives = 149/229 (65.07%), Query Frame = 0


Query: 1   MRRGTAAVRVAPITG--------SERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSA 60
           MRRG AA   AP+TG         E R+RGVR+RPWGRFAAEIRDP KKTRVWLGTFDSA
Sbjct: 1   MRRGRAAAAPAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSA 60

Query: 61  EDAARAYDNAAITLRGPKAKTNFPLPTP------TSFFDYPPPCPDRRFL--TNP---HR 120
           EDAARAYD AA  LRGPKAKTNFPLP                P  D RF    NP    R
Sbjct: 61  EDAARAYDAAARALRGPKAKTNFPLPYAHHHQFNQGHNPNNDPFVDSRFYPQDNPIISQR 120

Query: 121 PTSSTLSSTVESFSGPRTPSA--AAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGD- 180
           PTSS++SSTVESFSGPR P A     T++SR+Y R+PPVVP+DCHSDCDSSSSV+D GD 
Sbjct: 121 PTSSSMSSTVESFSGPRPPPAPRQQTTASSRKYTRSPPVVPDDCHSDCDSSSSVVDHGDC 180

Query: 181 ----------IASSSMIRRKSPLPFDLNIQPSDHLDFGGDDLGRTALCL 198
                     IASSS    + PL FDLN+ P    D G DDL  TALCL
Sbjct: 181 EKENDNDNDNIASSSF---RKPLLFDLNLPPPMD-DAGADDLHCTALCL 225

[Close]

BLAST of Carg25346 vs. ExPASy Swiss-Prot
Match: O80339 (Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ERF3 PE=1 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.6e-53
Identity = 131/223 (58.74%), Postives = 148/223 (66.37%), Query Frame = 0


Query: 3   RGTAAVR----VAPITGS--ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA 62
           RG++AV     VA I GS  E R+RGVR+RPWGRFAAEIRDP KK RVWLGTFDSAE+AA
Sbjct: 5   RGSSAVAGPTVVAAINGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAA 64

Query: 63  RAYDNAAITLRGPKAKTNFPL-----PTPTSFF--------DYPPPCPDRRFLTN----- 122
           RAYD+AA  LRGPKAKTNFP+     P P   F        +   P  D R  T+     
Sbjct: 65  RAYDSAARNLRGPKAKTNFPIDSSSPPPPNLRFNQIRNQNQNQVDPFMDHRLFTDHQQQF 124

Query: 123 --PHRPTSSTLSSTVESFSGPRTPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDD 182
              +RPTSS++SSTVESFSGPR  +   AT  ++RYPRTPPVVPEDCHSDCDSSSSVIDD
Sbjct: 125 PIVNRPTSSSMSSTVESFSGPRPTTMKPAT--TKRYPRTPPVVPEDCHSDCDSSSSVIDD 184

Query: 183 GDIASSSMIRRKSPLPFDLNIQPSDHLDF--GGDDLGRTALCL 198
            D  +SS  RR  P  FDLN  P D +D   G DDL  T L L
Sbjct: 185 DDDIASSSRRRNPPFQFDLNFPPLDCVDLFNGADDLHCTDLRL 225

[Close]

BLAST of Carg25346 vs. ExPASy Swiss-Prot
Match: Q9LDE4 (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ERF7 PE=1 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 7.0e-51
Identity = 132/240 (55.00%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 3   RGTAAVRVA-PITG----SERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAAR 62
           RG++ V  A P+T      E RYRGVR+RPWGRFAAEIRDPLKK+RVWLGTFDSA DAAR
Sbjct: 5   RGSSVVGPALPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAAR 64

Query: 63  AYDNAAITLRGPKAKTNFPL----PTPTSFFDY--------PP-------PCPDRRFLTN 122
           AYD AA  LRGPKAKTNFP+     +P     Y        PP       P  D R    
Sbjct: 65  AYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQNQIDPFMDHRLYGG 124

Query: 123 PH-----------RPTSSTLSSTVESFSGPRTPSAAAATS-------ASRRYPRTPPVVP 182
            +           RP SS++SSTV+S SGPR   AAAA+S       A +RYPRTPPV P
Sbjct: 125 GNFQEQQQQQIISRPASSSMSSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYPRTPPVAP 184

Query: 183 EDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPSDHLDF---GGDDLGRTALCL 198
           EDCHSDCDSSSSVIDDGD  +SS  RRK+P  FDLN  P D +D    G DDL  T L L
Sbjct: 185 EDCHSDCDSSSSVIDDGDDIASSSSRRKTPFQFDLNFPPLDGVDLFAGGIDDLHCTDLRL 244

[Close]

BLAST of Carg25346 vs. ExPASy Swiss-Prot
Match: Q9LW49 (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ERF4 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-21
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 17  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 76
           E  YRGVR+RPWGR+AAEIRDP KK+RVWLGTFD+AE+AA+AYD AA   RGPKAKTNFP
Sbjct: 24  EVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83

Query: 77  LPTPTSFFDYPPPCPDRRFLTNPHRPTSSTL 108
           LP+      +          T  H P  + L
Sbjct: 84  LPSENQSTSHSSTMESSSGETGIHAPPHAPL 114

[Close]

BLAST of Carg25346 vs. ExPASy Swiss-Prot
Match: Q9FE67 (Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=ERF9 PE=1 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.5e-21
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 17 ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 76
          E  +RGVR+RPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD AA   RG KAKTNFP
Sbjct: 30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89

Query: 77 LP 79
          LP
Sbjct: 90 LP 91

[Close]

BLAST of Carg25346 vs. ExPASy TrEMBL
Match: A0A6J1L2I9 (ethylene-responsive transcription factor 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498510 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 1.7e-100
Identity = 188/197 (95.43%), Postives = 188/197 (95.43%), Query Frame = 0


Query: 1   MRRGTAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60
           MR G AAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD
Sbjct: 1   MRXGRAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60

Query: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSGPRTP 120
           NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRF TNP RPT STLSSTVESFSGPR P
Sbjct: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFHTNPQRPTPSTLSSTVESFSGPRPP 120

Query: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPS 180
           SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRK PLPFDLNIQPS
Sbjct: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKYPLPFDLNIQPS 180

Query: 181 DHLDFGGDDLGRTALCL 198
           DHLDFG DDL RTALCL
Sbjct: 181 DHLDFGADDLRRTALCL 197

[Close]

BLAST of Carg25346 vs. ExPASy TrEMBL
Match: A0A6J1GAK1 (LOW QUALITY PROTEIN: ethylene-responsive transcription factor 3-like OS=Cucurbita moschata OX=3662 GN=LOC111452414 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.1e-98
Identity = 190/201 (94.53%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MRRGTA----AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA 60
           MRRG A    AVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA
Sbjct: 1   MRRGRAAADTAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA 60

Query: 61  RAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSG 120
           RAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCP    LTNPHRPTSSTLSSTVESFSG
Sbjct: 61  RAYDNAAITLRGPKAKTNFPLPTPTSFFDYPPPCPIPD-LTNPHRPTSSTLSSTVESFSG 120

Query: 121 PRTPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN 180
           PR PSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN
Sbjct: 121 PRPPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLN 180

Query: 181 IQPSDHLDFGGDDLGRTALCL 198
           IQPSDHLDFGGDDL RTALCL
Sbjct: 181 IQPSDHLDFGGDDLRRTALCL 200

[Close]

BLAST of Carg25346 vs. ExPASy TrEMBL
Match: A0A6J1KXR5 (ethylene-responsive transcription factor 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111498510 PE=4 SV=1)

HSP 1 Score: 354.8 bits (909), Expect = 2.4e-94
Identity = 178/185 (96.22%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MRRGTAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60
           MR G AAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD
Sbjct: 1   MRXGRAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYD 60

Query: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFLTNPHRPTSSTLSSTVESFSGPRTP 120
           NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRF TNP RPT STLSSTVESFSGPR P
Sbjct: 61  NAAITLRGPKAKTNFPLPTPTSFFDYPPPCPDRRFHTNPQRPTPSTLSSTVESFSGPRPP 120

Query: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPS 180
           SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRK PLPFDLNIQPS
Sbjct: 121 SAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDDGDIASSSMIRRKYPLPFDLNIQPS 180

Query: 181 DHLDF 186
           DHLDF
Sbjct: 181 DHLDF 185

[Close]

BLAST of Carg25346 vs. ExPASy TrEMBL
Match: A0A6J1EVY5 (ethylene-responsive transcription factor 3-like OS=Cucurbita moschata OX=3662 GN=LOC111438638 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 7.7e-77
Identity = 166/221 (75.11%), Postives = 172/221 (77.83%), Query Frame = 0


Query: 1   MRRG------TAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAED 60
           MRRG      TAA R A   GSERRYRGVR+RPWGRFAAEIRDP KKTRVWLGTFDSAED
Sbjct: 1   MRRGRGAATATAAAREAAPPGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAED 60

Query: 61  AARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPP---------------PCPDRRF-LTN 120
           AARAYDNAAITLRGPKAKTNFPL  P SFFDYPP               P  D RF + N
Sbjct: 61  AARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPHPHPHPHPVNAPDPFLDPRFQINN 120

Query: 121 PHRPTSSTLSSTVESFSGPRTPSAAAAT-SASRRYPRTPPVVPEDCHSDCDSSSSVIDDG 180
           PHRPTSS+LSSTVESFSGP  PSAAA T S SRRYPRTPP++PEDCHSDCDSSSSVIDDG
Sbjct: 121 PHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSDCDSSSSVIDDG 180

Query: 181 -DIASSSMIRRKSPLPFDLNIQPSDHLDFGGDDLGRTALCL 198
            DIASSSMI RK PLPFDLNI PS+ LD   DDLG TALCL
Sbjct: 181 DDIASSSMIPRKPPLPFDLNIPPSELLDLAADDLGCTALCL 221

[Close]

BLAST of Carg25346 vs. ExPASy TrEMBL
Match: A0A6J1HJM8 (ethylene-responsive transcription factor 3-like OS=Cucurbita maxima OX=3661 GN=LOC111465111 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.0e-76
Identity = 165/221 (74.66%), Postives = 172/221 (77.83%), Query Frame = 0


Query: 1   MRRG------TAAVRVAPITGSERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAED 60
           MRRG      TAA R A   GSERRYRGVR+RPWGRFAAEIRDP KKTRVWLGTFDSAED
Sbjct: 1   MRRGRGAATATAAAREAAPPGSERRYRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAED 60

Query: 61  AARAYDNAAITLRGPKAKTNFPLPTPTSFFDYPP---------------PCPDRRF-LTN 120
           AARAYDNAAITLRGPKAKTNFPL  P SFFDYPP               P  D RF + N
Sbjct: 61  AARAYDNAAITLRGPKAKTNFPLANPISFFDYPPYPHPHPHPHPVNAPDPFLDPRFQINN 120

Query: 121 PHRPTSSTLSSTVESFSGPRTPSAAAAT-SASRRYPRTPPVVPEDCHSDCDSSSSVIDDG 180
           PHRPTSS+LSSTVESFSGP  PSAAA T S SRRYPRTPP++PEDCHSDCDSSSSVIDDG
Sbjct: 121 PHRPTSSSLSSTVESFSGPHPPSAAATTASPSRRYPRTPPLLPEDCHSDCDSSSSVIDDG 180

Query: 181 -DIASSSMIRRKSPLPFDLNIQPSDHLDFGGDDLGRTALCL 198
            DIASSSM+ RK PLPFDLNI PS+ LD   DDLG TALCL
Sbjct: 181 DDIASSSMVPRKPPLPFDLNIPPSELLDLAADDLGCTALCL 221

[Close]

BLAST of Carg25346 vs. TAIR 10
Match: AT1G50640.1 (ethylene responsive element binding factor 3 )

HSP 1 Score: 209.9 bits (533), Expect = 1.8e-54
Identity = 131/223 (58.74%), Postives = 148/223 (66.37%), Query Frame = 0


Query: 3   RGTAAVR----VAPITGS--ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAA 62
           RG++AV     VA I GS  E R+RGVR+RPWGRFAAEIRDP KK RVWLGTFDSAE+AA
Sbjct: 5   RGSSAVAGPTVVAAINGSVKEIRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEEAA 64

Query: 63  RAYDNAAITLRGPKAKTNFPL-----PTPTSFF--------DYPPPCPDRRFLTN----- 122
           RAYD+AA  LRGPKAKTNFP+     P P   F        +   P  D R  T+     
Sbjct: 65  RAYDSAARNLRGPKAKTNFPIDSSSPPPPNLRFNQIRNQNQNQVDPFMDHRLFTDHQQQF 124

Query: 123 --PHRPTSSTLSSTVESFSGPRTPSAAAATSASRRYPRTPPVVPEDCHSDCDSSSSVIDD 182
              +RPTSS++SSTVESFSGPR  +   AT  ++RYPRTPPVVPEDCHSDCDSSSSVIDD
Sbjct: 125 PIVNRPTSSSMSSTVESFSGPRPTTMKPAT--TKRYPRTPPVVPEDCHSDCDSSSSVIDD 184

Query: 183 GDIASSSMIRRKSPLPFDLNIQPSDHLDF--GGDDLGRTALCL 198
            D  +SS  RR  P  FDLN  P D +D   G DDL  T L L
Sbjct: 185 DDDIASSSRRRNPPFQFDLNFPPLDCVDLFNGADDLHCTDLRL 225

[Close]

BLAST of Carg25346 vs. TAIR 10
Match: AT3G20310.1 (ethylene response factor 7 )

HSP 1 Score: 201.8 bits (512), Expect = 5.0e-52
Identity = 132/240 (55.00%), Postives = 148/240 (61.67%), Query Frame = 0


Query: 3   RGTAAVRVA-PITG----SERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAAR 62
           RG++ V  A P+T      E RYRGVR+RPWGRFAAEIRDPLKK+RVWLGTFDSA DAAR
Sbjct: 5   RGSSVVGPALPVTAGGSVKEPRYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAAR 64

Query: 63  AYDNAAITLRGPKAKTNFPL----PTPTSFFDY--------PP-------PCPDRRFLTN 122
           AYD AA  LRGPKAKTNFP+     +P     Y        PP       P  D R    
Sbjct: 65  AYDTAARNLRGPKAKTNFPIDCSPSSPLQPLTYLHNQNLCSPPVIQNQIDPFMDHRLYGG 124

Query: 123 PH-----------RPTSSTLSSTVESFSGPRTPSAAAATS-------ASRRYPRTPPVVP 182
            +           RP SS++SSTV+S SGPR   AAAA+S       A +RYPRTPPV P
Sbjct: 125 GNFQEQQQQQIISRPASSSMSSTVKSCSGPRPMEAAAASSSVAKPLHAIKRYPRTPPVAP 184

Query: 183 EDCHSDCDSSSSVIDDGDIASSSMIRRKSPLPFDLNIQPSDHLDF---GGDDLGRTALCL 198
           EDCHSDCDSSSSVIDDGD  +SS  RRK+P  FDLN  P D +D    G DDL  T L L
Sbjct: 185 EDCHSDCDSSSSVIDDGDDIASSSSRRKTPFQFDLNFPPLDGVDLFAGGIDDLHCTDLRL 244

[Close]

BLAST of Carg25346 vs. TAIR 10
Match: AT5G44210.1 (erf domain protein 9 )

HSP 1 Score: 104.4 bits (259), Expect = 1.1e-22
Identity = 49/62 (79.03%), Postives = 54/62 (87.10%), Query Frame = 0


Query: 17 ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 76
          E  +RGVR+RPWGR+AAEIRDP KKTRVWLGTFD+AE+AARAYD AA   RG KAKTNFP
Sbjct: 30 EVHFRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAAREFRGSKAKTNFP 89

Query: 77 LP 79
          LP
Sbjct: 90 LP 91

[Close]

BLAST of Carg25346 vs. TAIR 10
Match: AT1G53170.1 (ethylene response factor 8 )

HSP 1 Score: 102.8 bits (255), Expect = 3.2e-22
Identity = 56/89 (62.92%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 17  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 76
           E RYRGVR+RPWGR+AAEIRDP+KKTRVWLGTFD+A+ AARAYD AA   RG KAKTNF 
Sbjct: 28  EIRYRGVRKRPWGRYAAEIRDPVKKTRVWLGTFDTAQQAARAYDAAARDFRGVKAKTNFG 87

Query: 77  L-----PTPTSFFDYPPPCPDRRFLTNPH 101
           +     PT +S     P     RF+T PH
Sbjct: 88  VIVGSSPTQSSTVVDSPTA--ARFITPPH 114

[Close]

BLAST of Carg25346 vs. TAIR 10
Match: AT1G03800.1 (ERF domain protein 10 )

HSP 1 Score: 102.1 bits (253), Expect = 5.4e-22
Identity = 47/61 (77.05%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 17  ERRYRGVRRRPWGRFAAEIRDPLKKTRVWLGTFDSAEDAARAYDNAAITLRGPKAKTNFP 76
           E RYRGVRRRPWGR+AAEIRDP+KK RVWLG+F++ E+AARAYD+AAI  RG KA TNFP
Sbjct: 50  EVRYRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNFP 109

Query: 77  L 78
           L
Sbjct: 110 L 110

The following BLAST results are available for this feature:

BLAST of Carg25346 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6596944.1	6.7e-107	100.00	Ethylene-responsive transcription factor 3, partial [Cucurbita argyrosperma subs...	[more]
XP_023005563.1	3.5e-100	95.43	ethylene-responsive transcription factor 3-like isoform X1 [Cucurbita maxima]	[more]
XP_022948893.1	4.3e-98	94.53	LOW QUALITY PROTEIN: ethylene-responsive transcription factor 3-like [Cucurbita ...	[more]
XP_023520762.1	2.2e-94	95.24	ethylene-responsive transcription factor 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_023005565.1	4.9e-94	96.22	ethylene-responsive transcription factor 3-like isoform X2 [Cucurbita maxima]	[more]

BLAST of Carg25346 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SXS8	1.4e-54	59.39	Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum OX=4097 GN=ERF3 ...	[more]
O80339	2.6e-53	58.74	Ethylene-responsive transcription factor 3 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q9LDE4	7.0e-51	55.00	Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]
Q9LW49	1.5e-21	58.24	Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris OX=4096 GN=ER...	[more]
Q9FE67	1.5e-21	79.03	Ethylene-responsive transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=ER...	[more]

BLAST of Carg25346 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L2I9	1.7e-100	95.43	ethylene-responsive transcription factor 3-like isoform X1 OS=Cucurbita maxima O...	[more]
A0A6J1GAK1	2.1e-98	94.53	LOW QUALITY PROTEIN: ethylene-responsive transcription factor 3-like OS=Cucurbit...	[more]
A0A6J1KXR5	2.4e-94	96.22	ethylene-responsive transcription factor 3-like isoform X2 OS=Cucurbita maxima O...	[more]
A0A6J1EVY5	7.7e-77	75.11	ethylene-responsive transcription factor 3-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HJM8	1.0e-76	74.66	ethylene-responsive transcription factor 3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Carg25346 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G50640.1	1.8e-54	58.74	ethylene responsive element binding factor 3	[more]
AT3G20310.1	5.0e-52	55.00	ethylene response factor 7	[more]
AT5G44210.1	1.1e-22	79.03	erf domain protein 9	[more]
AT1G53170.1	3.2e-22	62.92	ethylene response factor 8	[more]
AT1G03800.1	5.4e-22	77.05	ERF domain protein 10	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (SMH-JMG-627) v2
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 42..58 score: 69.09 coord: 20..31 score: 68.03
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 19..82 e-value: 1.6E-39 score: 147.3
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 19..68 e-value: 1.6E-14 score: 53.9
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 19..76 score: 23.99931
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 26..76 e-value: 7.64078E-27 score: 95.031
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 18..77 e-value: 8.6E-29 score: 101.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 98..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..152
None	No IPR available	PANTHER	PTHR31677	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	coord: 1..168
None	No IPR available	PANTHER	PTHR31677:SF157	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3	coord: 1..168
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 19..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25346-RA	Carg25346-RA	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity