Carg25304 (gene) Silver-seed gourd (SMH-JMG-627) v2

Overview
NameCarg25304
Typegene
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionUnknown protein
LocationCarg_Chr11: 10458043 .. 10458903 (-)
RNA-Seq ExpressionCarg25304
SyntenyCarg25304
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCGCCGCTGCAGCAGACGGTGGGAGGGCGAACAAAGCGAATCCTGGAACTGGATTTGTTAAGGCGGCGTTCCAGTTGCCGATTGAGAACGCCGAAGAGGTCACGGATTTGGTCTAAGGTCGGTGAGTCAGGGCCGGGGAAAGGATTGTGTTCCTTATCGAATTTACAGAATTCTTGGAAGACGAGGTCACAGTGGGACTGTGGAAGTTGGTCGATAAGGTTTTGGATTGGCCGATACAATCTCCGGGCTTCGGCGATGCAGCGGCGGAGGGAGAGGCAGAATCTGGTGGCTTTCTCGCTGTTATCGAAGTAAGAAGATATGAGTTCAGAAAGGGATTTGGATTTAGATCGGTGAAGAACCTTGTGGACGTGATCTCGATCAGGGCGAAGCACCTGAGCGAGCACCAGGTGGTCTTGATCGGCGACCACAAGGTCCATGGAGCTGGTGATTCTCGACATCTCCTTGTAGGAATCGGCATGGAGGACATTGATGGTGTATATGCGAGAGAGATTGGTAGATCTAGGTGAGGCATCCATGGGAGTCTGTCTCTGAATGGCTGTTGTGATGAACAGTTAGAACGCAGAAATGGAATGGAGGAAATTTCAGAGTTTGAATGAAAAACGAAGGGATTTCAACATTTTTTTTTTCTGTTCGCGAATTTCTCAGTAATGGCGGAAGGGAAAGTAATGGAAGCTGAATCGTAGCAGGAAGGAAGAAGGAAAGAAGGGGTTTTATCTGTTCGGTGATGACGTGGATACTGATGACGTGGACAATTGTCTTGCAATTTGTTTGACCTCCCCCATTCACTTGCTTGGGAAGTTTCTTGCGGCTGAAGGTGGGTTCTCGGACGCGTAA

mRNA sequence

ATGGCATCGCCGCTGCAGCAGACGGTGGGAGGGCGAACAAAGCGAATCCTGGAACTGGATTTGTTAAGGCGGCGTTCCAGTTGCCGATTGAGAACGCCGAAGAGGTCACGGATTTGGTCTAAGGTCGAATTCTTGGAAGACGAGGTCACAGTGGGACTGTGGAAGTTGGTCGATAAGGTTTTGGATTGGCCGATACAATCTCCGGGCTTCGGCGATGCAGCGGCGGAGGGAGAGGCAGAATCTGGTGGCTTTCTCGCTGTTATCGAAGTAAGAAGATATGAGTTCAGAAAGGGATTTGGATTTAGATCGGTGAAGAACCTTGTGGACGTGATCTCGATCAGGGCGAAGCACCTGAGCGAGCACCAGGTGGTCTTGATCGGCGACCACAAGGTCCATGGAGCTGGTGATTCTCGACATCTCCTTGTAGGAATCGGCATGGAGGACATTGATGGTGTATATGCGAGAGAGATTGGTAGATCTAGGAAGGAAGAAGGAAAGAAGGGGTTTTATCTGTTCGGTGATGACGTGGATACTGATGACGTGGACAATTGTCTTGCAATTTGTTTGACCTCCCCCATTCACTTGCTTGGGAAGTTTCTTGCGGCTGAAGGTGGGTTCTCGGACGCGTAA

Coding sequence (CDS)

ATGGCATCGCCGCTGCAGCAGACGGTGGGAGGGCGAACAAAGCGAATCCTGGAACTGGATTTGTTAAGGCGGCGTTCCAGTTGCCGATTGAGAACGCCGAAGAGGTCACGGATTTGGTCTAAGGTCGAATTCTTGGAAGACGAGGTCACAGTGGGACTGTGGAAGTTGGTCGATAAGGTTTTGGATTGGCCGATACAATCTCCGGGCTTCGGCGATGCAGCGGCGGAGGGAGAGGCAGAATCTGGTGGCTTTCTCGCTGTTATCGAAGTAAGAAGATATGAGTTCAGAAAGGGATTTGGATTTAGATCGGTGAAGAACCTTGTGGACGTGATCTCGATCAGGGCGAAGCACCTGAGCGAGCACCAGGTGGTCTTGATCGGCGACCACAAGGTCCATGGAGCTGGTGATTCTCGACATCTCCTTGTAGGAATCGGCATGGAGGACATTGATGGTGTATATGCGAGAGAGATTGGTAGATCTAGGAAGGAAGAAGGAAAGAAGGGGTTTTATCTGTTCGGTGATGACGTGGATACTGATGACGTGGACAATTGTCTTGCAATTTGTTTGACCTCCCCCATTCACTTGCTTGGGAAGTTTCTTGCGGCTGAAGGTGGGTTCTCGGACGCGTAA

Protein sequence

MASPLQQTVGGRTKRILELDLLRRRSSCRLRTPKRSRIWSKVEFLEDEVTVGLWKLVDKVLDWPIQSPGFGDAAAEGEAESGGFLAVIEVRRYEFRKGFGFRSVKNLVDVISIRAKHLSEHQVVLIGDHKVHGAGDSRHLLVGIGMEDIDGVYAREIGRSRKEEGKKGFYLFGDDVDTDDVDNCLAICLTSPIHLLGKFLAAEGGFSDA
Homology
BLAST of Carg25304 vs. NCBI nr
Match: KAG7022614.1 (hypothetical protein SDJN02_16348, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 423.3 bits (1087), Expect = 1.2e-114
Identity = 209/209 (100.00%), Postives = 209/209 (100.00%), Query Frame = 0

Query: 1   MASPLQQTVGGRTKRILELDLLRRRSSCRLRTPKRSRIWSKVEFLEDEVTVGLWKLVDKV 60
           MASPLQQTVGGRTKRILELDLLRRRSSCRLRTPKRSRIWSKVEFLEDEVTVGLWKLVDKV
Sbjct: 1   MASPLQQTVGGRTKRILELDLLRRRSSCRLRTPKRSRIWSKVEFLEDEVTVGLWKLVDKV 60

Query: 61  LDWPIQSPGFGDAAAEGEAESGGFLAVIEVRRYEFRKGFGFRSVKNLVDVISIRAKHLSE 120
           LDWPIQSPGFGDAAAEGEAESGGFLAVIEVRRYEFRKGFGFRSVKNLVDVISIRAKHLSE
Sbjct: 61  LDWPIQSPGFGDAAAEGEAESGGFLAVIEVRRYEFRKGFGFRSVKNLVDVISIRAKHLSE 120

Query: 121 HQVVLIGDHKVHGAGDSRHLLVGIGMEDIDGVYAREIGRSRKEEGKKGFYLFGDDVDTDD 180
           HQVVLIGDHKVHGAGDSRHLLVGIGMEDIDGVYAREIGRSRKEEGKKGFYLFGDDVDTDD
Sbjct: 121 HQVVLIGDHKVHGAGDSRHLLVGIGMEDIDGVYAREIGRSRKEEGKKGFYLFGDDVDTDD 180

Query: 181 VDNCLAICLTSPIHLLGKFLAAEGGFSDA 210
           VDNCLAICLTSPIHLLGKFLAAEGGFSDA
Sbjct: 181 VDNCLAICLTSPIHLLGKFLAAEGGFSDA 209

BLAST of Carg25304 vs. NCBI nr
Match: PON50492.1 (hypothetical protein TorRG33x02_314180 [Trema orientale])

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-05
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 43  EFLEDEVTVGLW-------KLVDKVLDWPIQSPGFGDAAAEGEAESGGFLAVIEVRRYEF 102
           E +E  V VGL        K V++V++  ++  G  DAA E EAE GG LAV+EV   E 
Sbjct: 8   EDVEGPVAVGLGEGLGVIRKKVEEVVERGVEGTGAEDAALEVEAEVGGVLAVVEVVGDEG 67

Query: 103 RKGFGFRSVKNLVDVISIRAKHLSEHQVVLIGDHKVHGAG-------------DSRHLLV 162
            +G G  + K L+D I++R K   + QV +    ++   G                +L V
Sbjct: 68  GEGVGLGATKGLLDGIAVRLKEGVQVQVQVQVQIQIQDRGCGCFVFPEDVNLNGGAYLFV 127

BLAST of Carg25304 vs. NCBI nr
Match: KAG7017877.1 (hypothetical protein SDJN02_19743, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-04
Identity = 30/53 (56.60%), Postives = 36/53 (67.92%), Query Frame = 0

Query: 109 DVISIRAKHLSEH---QVVLIGD-HKVHGAGDSRHLLVGIGMEDIDGVYAREI 158
           D ISI  KHL EH    + +IGD  KVHGAGDS HLL G+G+E+  GV  RE+
Sbjct: 33  DAISIGVKHLGEHTGVALTVIGDGQKVHGAGDSHHLLEGVGLENSSGVGVREV 85

BLAST of Carg25304 vs. ExPASy TrEMBL
Match: A0A2P5BNX6 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_314180 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 5.8e-06
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 43  EFLEDEVTVGLW-------KLVDKVLDWPIQSPGFGDAAAEGEAESGGFLAVIEVRRYEF 102
           E +E  V VGL        K V++V++  ++  G  DAA E EAE GG LAV+EV   E 
Sbjct: 8   EDVEGPVAVGLGEGLGVIRKKVEEVVERGVEGTGAEDAALEVEAEVGGVLAVVEVVGDEG 67

Query: 103 RKGFGFRSVKNLVDVISIRAKHLSEHQVVLIGDHKVHGAG-------------DSRHLLV 162
            +G G  + K L+D I++R K   + QV +    ++   G                +L V
Sbjct: 68  GEGVGLGATKGLLDGIAVRLKEGVQVQVQVQVQIQIQDRGCGCFVFPEDVNLNGGAYLFV 127

BLAST of Carg25304 vs. ExPASy TrEMBL
Match: A0A2P5AG37 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335950 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 5.4e-04
Identity = 48/144 (33.33%), Postives = 68/144 (47.22%), Query Frame = 0

Query: 43  EFLEDEVTVGLW-------KLVDKVLDWPIQSPGFGDAAAEGEAESGGFLAVIEVRRYEF 102
           E +E  V VGL        K V++V++  ++  G  DAA E EAE GG LAV+EV   E 
Sbjct: 12  EDVEGPVAVGLGEGLGVIRKKVEEVVERGVEGTGAEDAALEVEAEVGGVLAVVEVVGDEG 71

Query: 103 RKGFGFRSVKNLVDVISIRAKHLSEHQV------------------VLIGDHKVHGAGDS 162
            +G G  + K L+D I++R K   + QV                      D  ++G    
Sbjct: 72  GEGVGLGATKGLLDGIAVRLKEGVQVQVRGRGVWCWCFGFVFVFVFAFAEDVNLNGGA-- 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7022614.11.2e-114100.00hypothetical protein SDJN02_16348, partial [Cucurbita argyrosperma subsp. argyro... [more]
PON50492.11.2e-0534.53hypothetical protein TorRG33x02_314180 [Trema orientale][more]
KAG7017877.12.3e-0456.60hypothetical protein SDJN02_19743, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5BNX65.8e-0634.53Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_314180 PE=4 SV... [more]
A0A2P5AG375.4e-0433.33Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_335950 PE... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25304-RACarg25304-RAmRNA